SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15093
Pre Gene Modal
BGIBMGA004836
Annotation
PREDICTED:_DDB1-_and_CUL4-associated_factor_5_[Bombyx_mori]
Location
Bomo_Chr25(-):4773904-4785216      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.414
 

Sequence

CDS
ATGGCGAATATTGCTAACCCTGCACCATATACATATAAACGAGAAAGTGCAGTCATACCTACTATAAAATCAGAATTATTTAGTAATCGTTTAAAAGCCGCAAAGAATTTATATCGAAAAGATCTTTTGTGCCATTTCGGGTGTGTAAATGCTATAGAGTTTTCAAGCAATGGCGAAATTCTCGTATCAGGTGGAGATGACAGGCGTGTTATGGTTTGGAAATTTGGGCATGCAATATTAGATCATGGTAAACCACACTCATTAAAAGCAGTTCACCAATCAAATATTTTTTGTATTGGAATTACTAATGACAACAAAAAGATTTATTCAGGAGGGAATGATGATATTGTAATTGTTCATGATGTGGAAAGCAAAAGTCCACTTGAAGTACTCCAACACCAGAGAGCTGTATGCTGTCTTAGCATAGATCCGTTTAGTGAACGTGTAGTTTCAACCGCCGGTAATGATGGAAGACTGCTGCTGTTTGACACCAGGAGATCTGTTCATGAGTCCTTGGTTATATCACGGAGTCGAAAAGCTTTCCATGGGGTAATGTACCACCCGCAACAAGCTGGAATGCTTGTGTCTGCAAATGCAAGGGATGGAATTAGTCTGTGGGACTTGCGTTCACCTAAACAGCCAGTTGTACGTTATAGTGGAAAGAAGGGTCCCTATCAGAACAGCATGAGCGTTTGTTTTAATTCAACTGGCACTCACGTATTAGCCTTAAGGCGACGACTTCCACCAGTGCTGTATGCTGTCCAATCGCCAGAACCAGTTGCTGAATTCTATCATCAAGATTATTATAATTCGTGTACAATGAAGAGTTGTTCCTTTGCGGGTCAGAATGACGAATATGTGCTGTCCGGTTCGGATGACTTTAACATCTATGCATGGAAAATCCCAGACGGTGGAGGGGGATCTGAATTGGCTGTCGAGCCACCGCATTTAATTCTTTACGGACACAGATCCATAGTTAACCAAGTGAGGTACAATCGACATTACTGTACGATTGCGTCGTCGGGCGTTGAAAAAATTATAAAAGTTTGGTCGACCATTGAGTACCCGAAAATGCGCGGAACTCTTTTAGAAGAAGCTCAGGGATCGGACAATCCCCGGGAGATATACAGCCACGAGGACTACGTCTCGCTCGTTCATCACAGCGGACAGTACATATCGCACAACTACGCAGAGCAGTCGACCAACGAGGACCCGCGGATGATGGCGTTTTTCGATTCTCTGGTCCAACGCGAACTAGAGTGCCTCGCCTACGATACGGACTCCTTGGACGGCTCCTCGTCGGCTGCGTCCATGCTCGATCAGGACTCGGAGTCGTCAGACACCGACCAGATTGTTGCCGACTTCTTACCGCTGCCGCCGAAAAGAGAAAATCAAAATGGAGCACGCGGTCAACGATGCCCCAATCGCATGGCTCGCCTGGTGACGTCTCGTTACAATAAAAACGTACGGCCGCAGAAAAGAGACGCCCTCAGGCGCAGCAAGCAGCCTCGCAGCGCGGGCAAGTCGAGTGGCAAGGGCAAGGGAGTGCGCACCCGCGCGATGCGGCGCCCCGCGCCCCGCCCCGCACCCCCCGCCGATCGGACCGACTCCGACGAGCCCGCACGAGCGCTCTACAGGAACTCCGCCCGGATGATCAGACCGGTTAGAAGACGACAGAACTCCAGTAGGTCCGTTAAAAGAAAAGCCAAAACAAATTGTTACAGAAGAGTCTCGAATTTAAGGAACAACGGTGGCACCACACCTCAAGATAGTAGCGATAACAACAACTGTACGAACTACGACAATTACGAAGACAACATGGCGTTACCCAGTACAAGCTCAGGTTACAGAGGTCAAAACGCACCGGCGCTTTTCCGGATAGCCGAGGTGGATTCAGACGACGACCATTCGGCCAGCAGCAGGCCCCTGTCGCCGGGCAATCAAAACGCGAATTACGGCGTCCCCCCCAATCTAATCAGCATCGTCCCGACTCCGGTCAACGGCTCGCGTGACTCGTTGGGCGAGTCGCTGCGGCTCGAGCCCCACGAGCACGAGGGCCACGCCCCCTCACTCCCCTCCGAGAGCCGCCCCCGGCTGAACTTGCGCCGCGTCAGGAGAAACGGCCGCGCCGCTCTGCACCGGTCCGACTCCAGCGAGTCGCCGCCCTTGAAGGACGAGACCGAACGCGCCACTACCTCGCTCGAAGGTCGACTCTCGCCCAAAATCGGGTACAACCAGACAGTAGCGCGGCTCATGAATGAAACGAACGAGAGTGAGCTGGAGAGCAGTTGCAGCACGGAGAGCGGCGCGTGGCCCGTCCCGGTGGCGGGGGGTGCGGGGGGCGGGGGCGCCGGTCCGAGCGCCAAACCGCCCGAGGACGTTTCCGACGACTCTGACTTCCACGCGGTCAAGTTTCGTCAGCGCGTCAAAAAATCACGTCGTAGTTATAAGAGCCACATGGAATCAGATTCGAACTGA
Protein
MANIANPAPYTYKRESAVIPTIKSELFSNRLKAAKNLYRKDLLCHFGCVNAIEFSSNGEILVSGGDDRRVMVWKFGHAILDHGKPHSLKAVHQSNIFCIGITNDNKKIYSGGNDDIVIVHDVESKSPLEVLQHQRAVCCLSIDPFSERVVSTAGNDGRLLLFDTRRSVHESLVISRSRKAFHGVMYHPQQAGMLVSANARDGISLWDLRSPKQPVVRYSGKKGPYQNSMSVCFNSTGTHVLALRRRLPPVLYAVQSPEPVAEFYHQDYYNSCTMKSCSFAGQNDEYVLSGSDDFNIYAWKIPDGGGGSELAVEPPHLILYGHRSIVNQVRYNRHYCTIASSGVEKIIKVWSTIEYPKMRGTLLEEAQGSDNPREIYSHEDYVSLVHHSGQYISHNYAEQSTNEDPRMMAFFDSLVQRELECLAYDTDSLDGSSSAASMLDQDSESSDTDQIVADFLPLPPKRENQNGARGQRCPNRMARLVTSRYNKNVRPQKRDALRRSKQPRSAGKSSGKGKGVRTRAMRRPAPRPAPPADRTDSDEPARALYRNSARMIRPVRRRQNSSRSVKRKAKTNCYRRVSNLRNNGGTTPQDSSDNNNCTNYDNYEDNMALPSTSSGYRGQNAPALFRIAEVDSDDDHSASSRPLSPGNQNANYGVPPNLISIVPTPVNGSRDSLGESLRLEPHEHEGHAPSLPSESRPRLNLRRVRRNGRAALHRSDSSESPPLKDETERATTSLEGRLSPKIGYNQTVARLMNETNESELESSCSTESGAWPVPVAGGAGGGGAGPSAKPPEDVSDDSDFHAVKFRQRVKKSRRSYKSHMESDSN

Summary

Uniprot
H9J5P6   A0A2A4JCA2   A0A2A4JBV0   A0A212ER59   A0A194RQH0   A0A2H1WPZ2   + More
A0A1W4X6Y0   A0A1W4WXK2   A0A1J1HZT1   A0A1J1HU91  
Pubmed
19121390    22118469    26354079   
EMBL
BABH01024942    BABH01024943    NWSH01002042    PCG69328.1    PCG69329.1    AGBW02013098    + More
OWR43986.1    KQ460045    KPJ18271.1    ODYU01010189    SOQ55141.1    CVRI01000021    CRK91641.1    CRK91640.1   
Proteomes
UP000005204    UP000218220    UP000007151    UP000053240    UP000192223    UP000183832    + More
PRIDE
H9J5P6   
Pfam
PF00400   WD40
Interpro
IPR036322   WD40_repeat_dom_sf        + More
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR019775   WD40_repeat_CS       
SUPFAM
SSF50978   SSF50978       
Gene 3D
2.130.10.10    
ProteinModelPortal
H9J5P6   A0A2A4JCA2   A0A2A4JBV0   A0A212ER59   A0A194RQH0   A0A2H1WPZ2   + More
A0A1W4X6Y0   A0A1W4WXK2   A0A1J1HZT1   A0A1J1HU91  
PDB
5YZV     E-value=9.5093e-07,     Score=129

Ontologies

KEGG
101739949    K11800 WD repeat-containing protein 22 | (RefSeq) DDB1- and CUL4-associated factor 5
GO
GO:0005515   GO:0008270   GO:0005840   GO:0006412   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Topology

Length:
825
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02394
Exp number, first 60 AAs:
0.01997
Total prob of N-in:
0.00113
outside
1  -  825
 
 

Population Genetic Test Statistics

Pi
253.344232
Theta
229.865586
Tajima's D
0.899038
CLR
0.578548
CSRT
0.629918504074796
Interpretation
Uncertain
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