Gene

KWMTBOMO15090  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004838

Annotation

mitochondrial_ribosomal_protein_S5_[Bombyx_mori]

Location

Bomo_Chr25(-):4755074-4760486      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.853

CDS

ATGTGTTCAAAAATTTTAACACTTAGTAATGTTTTGAGTAGACCTATGCAGTTATTTTTTAAGCCAAATGCTACTTCTAACCTAAAACCAAATATCAATGTAACCTCAGTGGCTTGCGTGAGTTTCTTTAATAAATTACCAGCTGAAAAACTTTGGAAGTCTGTAACATCTGTAAGTAATGCGGGTGCCAAGAAGGGTCGTGGCAAGGGAGCAGGTAGGATCCGAATCCGAGACTTGAATAGAGGCCAGGTAATTGGCACAGGAAAAGTTAATATGTTGTGGCCTGGTCTATCAGCCCCTGTGATCAGAGGCAGAGAATTATTGAAACAGCAAAAGCTACCTGATGATCCTGAAAGAATGGAAAAGCTAATAAAAATACGAGATTCAATGACAAAGTTCCGTCGTCTGAAACTGAGCTCCATCGAAAGGGGCTGGTCTGGCTCCCGTATGCCAGGACGTAGTATTGGGCCTCCAGATCCCATAGGGGAAGATGAATTCATTGGCTTCGACACTAAAGTTCTCCAGCTAAGATCTTTGTTGATCATGAAAGGAAATTTAGGACGAACACGAAACTATCAAGCCATGGTGGTGACAGGAAATGGTCAAGGTCTTGCTGGTTTTGGGCTTGGTAAAGCCAAGGAAGCTCCTGCAGCCTTGAGAAAGGCTAAGAACAGGGCGGGACAGAAATTAATGCATTTTGAAATTTACAATGGACACACAATTTTCCACGACTTTTTCACGGCTTTCGGCAAGACTAAAATCTTTGTTCAAAAGAAAAATGAAGGTTACGGCTTGAAATGTCACCGAGCTATAAGGGAGATTTGTCAAGCCATCGGCATCAAGGATATAAGGGCTAAATTAGAGGGCTCTAACAATTTGCAACACATTGTGAAGGCATTCTTTATTGGACTATTGCAACAGAGAACACACAAACAATTAGCCGAAGAGAAGAAACTCCACCTTGTAGAGTACAGAGCTGAGAACGAATATTATCCAAAAGTAGTGGCCAGCCCAACAGAGGTTCGGACCAAAGATCAAATACCTCGCGACGAGACTCTTCATTTTGTCCAATACGTTATGAACGACAAGGTGATACTGCGGAAGAAAAAATTCCCACCCTTTTATGAGAAAATGCCACATTACAAAATTTACTTAAAGAAATACGAGAAGTATAGGAATCACGAGAAGATTAGGCAAATGTTAAAAGTCGAATATGGCGACGTGAAGAGCTTCCTAAATGAACGGTTTCCCGAAGAGAAGGTGGAACAGAGTGAAACTTAA

Protein

MCSKILTLSNVLSRPMQLFFKPNATSNLKPNINVTSVACVSFFNKLPAEKLWKSVTSVSNAGAKKGRGKGAGRIRIRDLNRGQVIGTGKVNMLWPGLSAPVIRGRELLKQQKLPDDPERMEKLIKIRDSMTKFRRLKLSSIERGWSGSRMPGRSIGPPDPIGEDEFIGFDTKVLQLRSLLIMKGNLGRTRNYQAMVVTGNGQGLAGFGLGKAKEAPAALRKAKNRAGQKLMHFEIYNGHTIFHDFFTAFGKTKIFVQKKNEGYGLKCHRAIREICQAIGIKDIRAKLEGSNNLQHIVKAFFIGLLQQRTHKQLAEEKKLHLVEYRAENEYYPKVVASPTEVRTKDQIPRDETLHFVQYVMNDKVILRKKKFPPFYEKMPHYKIYLKKYEKYRNHEKIRQMLKVEYGDVKSFLNERFPEEKVEQSET

Similarity

Belongs to the universal ribosomal protein uS5 family.

Uniprot

Q1HQC2   H9J5P8   Q1HQC1   A0A2A4JD36   A0A2H1WPZ6   A0A3S2LQA1   + More
A0A194PGQ2   A0A194RLH9   A0A182Y761   A0A1Y9HAX0   A0A2M4AI07   A0A2M4AI93   A0A2M4AI70   A0A182M8K8   A0A182RID9   A0A0K8TML7   A0A182JVM2   A0A182XFI9   Q17EJ6   A0A084WNQ2   A0A182I806   Q7QBB8   A0A182W0F7   A0A182L7L6   W5J154   A0A1S4F5P0   A0A182N5J8   A0A2J7QX50   A0A1Y1NGK8   A0A067QVQ5   A0A182GP93   A0A182PNL8   A0A1Q3FCE6   A0A182FAT9   A0A182V3I7   B0X649   A0A023ESB8   A0A182JLY5   D6WPZ9   A0A1W4WV11   A0A1B6J4L2   A0A1B0D0K6   A0A1B6KYM6   A0A1B6FFS3   A0A1A9VEQ0   A0A1B0BJD1   A0A1A9XZC7   A0A182TS38   U4UFP9   J3JXW5   A0A336LTK2   A0A1L8DS16   N6UHF5   A0A1I8Q5L0   A0A1L8DRM9   E9G4G3   A0A0P6IUN9   A0A1J1HXT7   A0A0P6A944   N6UMW1   A0A1I8M9X1   A0A2R7VS26   A0A1A9W3L3   A0A2H8TK94   A0A0N7ZBN0   J9K9P7   A0A226EXE0   A0A069DTJ5   A0A2S2NHX0   A0A026WSL9   A0A0V0G9I2   A0A0P5XFR3   A0A232EYG4   A0A151IMR9   E2AY11   A0A0N8BJL8   A0A0P4VGS8   T1I958   W8BCS6   E2BLL3   A0A0P4Y8I9   A0A0P5Y5G3   A0A0N7ZUV8   A0A195ETL8   A0A195EM37   A0A0A9Y4Z9   A0A146KTA7   F4W7I1   A0A1S4E856   A0A0A1WZM0   A0A1D2NBT0   A0A0P5URQ8   A0A151X8M9   A0A3R7MF19   A0A158NPQ8   A0A0P5LVJ3   T1IPT9   A0A0P5NP62  

Pubmed

19121390    26354079    25244985    26369729    17510324    24438588    + More
12364791    14747013    17210077    20966253    20920257    23761445    28004739    24845553    26483478    24945155    18362917    19820115    23537049    22516182    21292972    25315136    26334808    24508170    30249741    28648823    20798317    27129103    24495485    25401762    26823975    21719571    25830018    27289101    21347285   

EMBL

DQ443130    ABF51219.1    BABH01024944    DQ443131    ABF51220.1    NWSH01002042    + More
PCG69332.1    ODYU01010189    SOQ55145.1    RSAL01000517    RVE41482.1    KQ459604    KPI92218.1    KQ460045    KPJ18274.1    AXCN02001163    GGFK01007090    MBW40411.1    GGFK01007179    MBW40500.1    GGFK01007153    MBW40474.1    AXCM01002419    GDAI01002202    JAI15401.1    CH477282    EAT44883.1    ATLV01024652    KE525354    KFB51846.1    APCN01002596    AAAB01008880    EAA08634.4    ADMH02002196    ETN57872.1    NEVH01009395    PNF33155.1    GEZM01002891    JAV97083.1    KK852955    KDR13269.1    JXUM01078098    KQ563044    KXJ74583.1    GFDL01009863    JAV25182.1    DS232402    EDS41199.1    GAPW01001453    JAC12145.1    KQ971354    EFA06900.1    GECU01013609    JAS94097.1    AJVK01021486    GEBQ01023414    JAT16563.1    GECZ01020718    JAS49051.1    JXJN01015367    KB632095    ERL88745.1    BT128087    AEE63048.1    UFQS01000189    UFQT01000189    SSX00996.1    SSX21376.1    GFDF01004944    JAV09140.1    APGK01025901    KB740605    ENN80051.1    GFDF01004946    JAV09138.1    GL732532    EFX85562.1    GDIQ01027513    JAN67224.1    CVRI01000026    CRK92370.1    GDIP01045659    JAM58056.1    ENN80052.1    KK854047    PTY10256.1    GFXV01002645    MBW14450.1    GDRN01080954    JAI62104.1    ABLF02039536    LNIX01000001    OXA61286.1    GBGD01001803    JAC87086.1    GGMR01004165    MBY16784.1    KK107119    QOIP01000009    EZA58636.1    RLU18682.1    GECL01001509    JAP04615.1    GDIP01074396    JAM29319.1    NNAY01001597    OXU23472.1    KQ977026    KYN06249.1    GL443740    EFN61714.1    GDIQ01171315    JAK80410.1    GDKW01003062    JAI53533.1    ACPB03001910    GAMC01010088    JAB96467.1    GL449036    EFN83347.1    GDIP01234829    JAI88572.1    GDIP01075785    JAM27930.1    GDIP01210273    JAJ13129.1    KQ981986    KYN31252.1    KQ978730    KYN28944.1    GBHO01015487    GBRD01004143    JAG28117.1    JAG61678.1    GDHC01018908    JAP99720.1    GL887844    EGI69854.1    GBXI01010181    JAD04111.1    LJIJ01000098    ODN02702.1    GDIP01126528    JAL77186.1    KQ982409    KYQ56689.1    QCYY01001167    ROT80017.1    ADTU01022709    GDIQ01167374    JAK84351.1    JH431265    GDIQ01149841    JAL01885.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000076408    + More
UP000075886    UP000075883    UP000075900    UP000075881    UP000076407    UP000008820    UP000030765    UP000075840    UP000007062    UP000075920    UP000075882    UP000000673    UP000075884    UP000235965    UP000027135    UP000069940    UP000249989    UP000075885    UP000069272    UP000075903    UP000002320    UP000075880    UP000007266    UP000192223    UP000092462    UP000078200    UP000092460    UP000092443    UP000075902    UP000030742    UP000019118    UP000095300    UP000000305    UP000183832    UP000095301    UP000091820    UP000007819    UP000198287    UP000053097    UP000279307    UP000215335    UP000078542    UP000000311    UP000015103    UP000008237    UP000078541    UP000078492    UP000007755    UP000079169    UP000094527    UP000075809    UP000283509    UP000005205   

PRIDE

Q1HQC2    H9J5P8    Q1HQC1   

Pfam

PF00333   Ribosomal_S5        + More
PF03719   Ribosomal_S5_C

Interpro

IPR014721   Ribosomal_S5_D2-typ_fold_subgr        + More
IPR013810   Ribosomal_S5_N       
IPR018192   Ribosomal_S5_N_CS       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR000851   Ribosomal_S5       
IPR005324   Ribosomal_S5_C       

SUPFAM

SSF54211   SSF54211       

Gene 3D

3.30.230.10    

ProteinModelPortal

Q1HQC2   H9J5P8   Q1HQC1   A0A2A4JD36   A0A2H1WPZ6   A0A3S2LQA1   + More
A0A194PGQ2   A0A194RLH9   A0A182Y761   A0A1Y9HAX0   A0A2M4AI07   A0A2M4AI93   A0A2M4AI70   A0A182M8K8   A0A182RID9   A0A0K8TML7   A0A182JVM2   A0A182XFI9   Q17EJ6   A0A084WNQ2   A0A182I806   Q7QBB8   A0A182W0F7   A0A182L7L6   W5J154   A0A1S4F5P0   A0A182N5J8   A0A2J7QX50   A0A1Y1NGK8   A0A067QVQ5   A0A182GP93   A0A182PNL8   A0A1Q3FCE6   A0A182FAT9   A0A182V3I7   B0X649   A0A023ESB8   A0A182JLY5   D6WPZ9   A0A1W4WV11   A0A1B6J4L2   A0A1B0D0K6   A0A1B6KYM6   A0A1B6FFS3   A0A1A9VEQ0   A0A1B0BJD1   A0A1A9XZC7   A0A182TS38   U4UFP9   J3JXW5   A0A336LTK2   A0A1L8DS16   N6UHF5   A0A1I8Q5L0   A0A1L8DRM9   E9G4G3   A0A0P6IUN9   A0A1J1HXT7   A0A0P6A944   N6UMW1   A0A1I8M9X1   A0A2R7VS26   A0A1A9W3L3   A0A2H8TK94   A0A0N7ZBN0   J9K9P7   A0A226EXE0   A0A069DTJ5   A0A2S2NHX0   A0A026WSL9   A0A0V0G9I2   A0A0P5XFR3   A0A232EYG4   A0A151IMR9   E2AY11   A0A0N8BJL8   A0A0P4VGS8   T1I958   W8BCS6   E2BLL3   A0A0P4Y8I9   A0A0P5Y5G3   A0A0N7ZUV8   A0A195ETL8   A0A195EM37   A0A0A9Y4Z9   A0A146KTA7   F4W7I1   A0A1S4E856   A0A0A1WZM0   A0A1D2NBT0   A0A0P5URQ8   A0A151X8M9   A0A3R7MF19   A0A158NPQ8   A0A0P5LVJ3   T1IPT9   A0A0P5NP62  

PDB

6GAZ     E-value=1.03659e-59,     Score=583

KEGG

732873    K02988 small subunit ribosomal protein S5 | (RefSeq) mRpS5; mitochondrial ribosomal protein S5

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0003723   GO:0005763   GO:0016021   GO:0005515   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

PANTHER

PTHR13718  

Length:

426

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0332299999999999

Exp number, first 60 AAs:

0.00113

Total prob of N-in:

0.00661

outside

1  -  426

 

 

Pi

148.462103

Theta

138.720513

Tajima's D

-0.645278

CLR

0.953247

CSRT

0.213039348032598

Interpretation

Uncertain