SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15089
Pre Gene Modal
BGIBMGA014080
Annotation
PREDICTED:_autophagy-related_protein_2_homolog_A-like_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.568 Nuclear   Reliability : 1.903
 

Sequence

CDS
ATGGCATGCAATGCAATGCATGCCATCGATAGACAGCATGTCATTGATATACAGGATGAAAAGCGTGGGGGAGAGCACCGAACTTTGTGGAACGCCAGCGTTAATGATCATCGTATCAGAACAGGCACCGTCTACAACGACCGTGATGTTCCGCCCATCCAAAAAGCTAGCGATCCACTTGCAGAGACCCTCGGGGATTCCGTAAGATGGGTCCTGACGTCTCCTGGCATCAACCCATGCCGCGTATGCGGACCGCTTAAGGTGTGCAGCATCCCTACTGGCATTGTTATACCAGGGTCTGCCGCGACCCCCAACGAGCACCTCAGAGGAGAGAATAAACAATTCCATCCCCTGGAGCACTACGTCTTTAAGACAGTCCGCACAGACGTCAGGATCGGTAGAGGAAAAGCAGAACCGTCCCCATGGGTTAAATCCGGCGGCGATGGGAGCAACACCGACGACGAATACTGTTTCGTGGAGACCCAACCCAGCAGTCAGGACAACGATCTGGATGAGCCAGTCGTGAACTGGATCGGTTCAGGGCCGGCCTACATGTTCGACAATCACTTCAGCGTTCCCGCTGCTAGGACTGATGTACTTAAAGCACCGAAGAGTTTCCCATTGCCGATGTTGCGGTACACGTTGTGCGAAATGAGCATCACATGGAACATGTACGGGGGCAATGACTTCCGTAATCCCGCCGACGCGGTATCTTCCAAGAAAACGGTCACCATAGATGACAATCGTAAATTAGGATCCCCTACCTCTGTAAAGCGCAGTAAAGACTACGAGCCGTACGAGAGCGGCCGCGCCATTGCAGCCGCGTACAGAAGCGGCGGGGTCGGCTGGGCGGCGGGCGCCGACCGAGTGCGGACCAACACGCGCGCGAGCGTGAAGCGCAGGGAACTACGCACCAGGGGCGGACCTCAACGCGACCACAAGACGAAGGTCAAACTGTGCCTCACTAAAGTGAAATTCCAATACGAGGTGTATCCTTCTGGTGGCATGCACGCGTCCCGGCAAACCCTCGCGATCAGCAAGATCGAAGTATTGGATCAACTTGAGTGCAGCGACATCAACAAGCTTCTCAGCCAGTACAAGTTGAAAGACGAGCCGGAGAGAAAAAACGCCCATATGTTAGTTGTGAAAGCGGTACACCTGCGTCCAGACCCAGCACTGACGGCCCAGGAGTGCTGCCTCAAGATATCTCTGTTGCCGCTCTGGTTCAACCTCGACCAAGACACGTTGGGCTTCTTGATGGGATACTTTTCTAAATTAGGGTCTGATGAATGCAGCGGTGAAGACGACTCAAAAAGCGTCGGAGGTCTGTCGACGGACTCGAGCGGGTCGAGACAGACCACGCCCACCCACCGGCCCCCCGTCATGACCATCGCGAGCCACCTCAAGGACCCGCCCCCCACCCCCACCTCGCTGGGGGACGCTGATGCCCTATCGCTCAACGAAACTGTGCTTCGCGATGAAGAGCCTCTAATGGAGACATACGAAGCGGAACGTCTGGTCTCCGAGAACCTGATCCAGCTCGAGGAAGACTTCAACAAACTGGGCATCGATCAAGGGAAACCGGCCGCGAAGCTACCCGTCGACGCTGAGCCCGTCGACGACTCACCGATTTACTTCAGACGCGTGGTGTTTTCCCCGGAAGTACCCATACGGTTGGACTACGTGGGCAAACGCGTGGACCTGTCGTCTGGTCCGGTCGCTGGCCTGCTCATGGGACTGGGACAGCTCAACTGCTCCGAACTCACACTGAAGAGGCTTGACTACAAACTTGGATTGTTGGGCACTGAGAAACTAGTTCAGTGGGCGTTGCACGAATGGCTCTCCGACATAAAGAGGCATCAACTACCGGGATTGCTCAGTGGAATAGGACCGATGCACTCGCTTTTACAACTCATAACCGGCATCCGCGACCTGGTGTGGCTGCCGGTGGAGCAGTGGCGGCGCGACGGGCGGCTGGTGCACGGGCTGCGGCGCGGCGCGGCCTCCTTCACGGCGCGCACCGCCGTCGCCGCGCTCGACATCACCACGCGCATCCTGCACCTCATACAGGCCACAGCAGAGACAGCATTCGACATGCTGACCCCCGGGCCGACCCTGCAGCTGCAAGACGCGTACAACCGCCGGGAGAGGCGTCGCCGGCGGCGGCTGGACCCCTCGCGTCATCCTACTGATATCAGAGACGGAGTGGCCAGCGCCTATCAAACAGTCCGAGAGGGCTTCGCGGAGACAGCGGCGACGGTGAGTCTGGCGGCGCGCGAGTCTAGCGGCGTGGGCGTGCTGCGCATGCTGCCCGGCGCCGCGGTGTCGCCGCTGCTGCTGGCGGCCGCGGGCGCCGCCGACCTGCTGGGCGGGGTGCGCGCCACGCTGGCGCCGCACGAGCGGGGACACTGCGCCGACAAGTGGCGCCGCCACCCTACTCCGGGCTAA
Protein
MACNAMHAIDRQHVIDIQDEKRGGEHRTLWNASVNDHRIRTGTVYNDRDVPPIQKASDPLAETLGDSVRWVLTSPGINPCRVCGPLKVCSIPTGIVIPGSAATPNEHLRGENKQFHPLEHYVFKTVRTDVRIGRGKAEPSPWVKSGGDGSNTDDEYCFVETQPSSQDNDLDEPVVNWIGSGPAYMFDNHFSVPAARTDVLKAPKSFPLPMLRYTLCEMSITWNMYGGNDFRNPADAVSSKKTVTIDDNRKLGSPTSVKRSKDYEPYESGRAIAAAYRSGGVGWAAGADRVRTNTRASVKRRELRTRGGPQRDHKTKVKLCLTKVKFQYEVYPSGGMHASRQTLAISKIEVLDQLECSDINKLLSQYKLKDEPERKNAHMLVVKAVHLRPDPALTAQECCLKISLLPLWFNLDQDTLGFLMGYFSKLGSDECSGEDDSKSVGGLSTDSSGSRQTTPTHRPPVMTIASHLKDPPPTPTSLGDADALSLNETVLRDEEPLMETYEAERLVSENLIQLEEDFNKLGIDQGKPAAKLPVDAEPVDDSPIYFRRVVFSPEVPIRLDYVGKRVDLSSGPVAGLLMGLGQLNCSELTLKRLDYKLGLLGTEKLVQWALHEWLSDIKRHQLPGLLSGIGPMHSLLQLITGIRDLVWLPVEQWRRDGRLVHGLRRGAASFTARTAVAALDITTRILHLIQATAETAFDMLTPGPTLQLQDAYNRRERRRRRRLDPSRHPTDIRDGVASAYQTVREGFAETAATVSLAARESSGVGVLRMLPGAAVSPLLLAAAGAADLLGGVRATLAPHERGHCADKWRRHPTPG

Summary

EMBL
GDQN01008634    JAT82420.1    KQ459604    KPI92217.1    AGBW02013098    OWR43991.1    + More
ODYU01006127    SOQ47706.1    GEZM01043182    JAV79247.1    GEZM01043181    JAV79248.1    KQ971354    KYB26227.1    JXUM01078091    KQ563044    KXJ74581.1    EFA07398.2    JXUM01064717    KQ562311    KXJ76186.1    KQ414667    KOC64737.1    AXCM01002419    KZ288194    PBC33937.1    CH477282    EAT44885.1    NEVH01020340    PNF21609.1    AAAB01008880    EAA08640.5    APCN01002595    APCN01002596    PNF21608.1    UFQS01000189    UFQT01000189    SSX00997.1    SSX21377.1    ADMH02002196    ETN57873.1    LJIG01016265    KRT81120.1    DS232402    EDS41201.1    AXCN02001163    GGFK01000646    MBW33967.1    NNAY01003012    OXU20123.1    GGFK01000493    MBW33814.1    GGFJ01000043    MBW49184.1    KQ435863    KOX70359.1    GFDL01002607    JAV32438.1    KK107405    EZA51215.1    GFDL01002599    JAV32446.1    QOIP01000014    RLU14943.1    GFDL01003706    JAV31339.1    GFDL01003708    JAV31337.1    ATLV01010765    KE524612    KFB35685.1    GL447336    EFN86545.1    GFDF01003674    JAV10410.1    GFDF01003673    JAV10411.1    KQ434809    KZC06215.1    GL442637    EFN63197.1    GBHO01018318    JAG25286.1    GDHC01019672    JAP98956.1    APGK01057870    KB741282    ENN70837.1    KB632233    ERL90415.1    KQ979079    KYN22683.1    GFTR01008928    JAW07498.1    CVRI01000059    CRL03003.1    KQ982730    KYQ51543.1    GEDC01015740    JAS21558.1    KQ981667    KYN38464.1    KQ976394    KYM93249.1    ADTU01017115    ADTU01017116    GL888087    EGI67715.1    KQ978068    KYM97612.1    LBMM01002400    KMQ94872.1    DS235339    EEB14915.1    GGMS01016983    MBY86186.1    GDIQ01081173    JAN13564.1    GDIQ01068336    JAN26401.1    JRES01000902    KNC27438.1    LRGB01001800    KZS10430.1    GFWV01023164    MAA47891.1    AJWK01029397    AJWK01029398    AJWK01029399    GDIQ01005267    JAN89470.1    GDIQ01101218    JAL50508.1    GDIQ01034443    JAN60294.1    GDIP01020857    JAM82858.1    GDIP01073634    JAM30081.1    KA646800    AFP61429.1    QCYY01002618    ROT68945.1    ABLF02012006    LNIX01000025    OXA42667.1    GFXV01001381    MBW13186.1    CYRY02042655    VCX36440.1   
Pfam
PF09333   ATG_C        + More
PF12624   Chorein_N
PF16909   VPS13_C
PF13329   ATG2_CAD
Interpro
IPR026849   ATG2        + More
IPR015412   Autophagy-rel_C       
IPR026854   VPS13_N       
IPR026885   ATG2_CAD_motif       
IPR031645   VPS13_C       

Ontologies

Topology

Length:
815
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.20653
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00043
outside
1  -  815
 
 

Population Genetic Test Statistics

Pi
245.46305
Theta
165.13826
Tajima's D
3.275386
CLR
0.347525
CSRT
0.989050547472626
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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