Gene

KWMTBOMO15084  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004839

Annotation

PREDICTED:_39S_ribosomal_protein_L40?_mitochondrial_[Plutella_xylostella]

Location

Bomo_Chr25(-):4612951-4616716      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.231

CDS

ATGAAGAAAAAAAAGAAAATAGATCCTGCTATTGTTAAAGCCCGTGAAGAGCGCCGTCGTAAGAAAATTGAGAAACAAATTCGAAGGCTTGAGAAGAATGCTAGACAGTTGAAACCTATTGATGAGTTGGAGGTTCCACTTCACTTGATGGATTCACTCAAAAAATATAAACGGCCTCCTGTTCAGTTGTCGGTCGAAGAAATCGAAGCCCGCGAGCTACTCCAAAAGGAATGGGCTCGTTACAAACGTGATGAATATATGAACAACATTGCACAAGTCGACAGGATCATGGCAGCCCAGAGACGCGCTCTGGACAGGCTGTACGAGGAATCAGAGGATCTGTACAATGAAGCTATTATGCCCGACTTGCAACTACTGCCTTATACCATAAGCGGTCCGGTAGCGACGCCGCCCATCAAGGACTACGAATCGCCCGACGGAGAATACATTGACGTGTCGAAGAAATGGGATAATTAG

Protein

MKKKKKIDPAIVKAREERRRKKIEKQIRRLEKNARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQKEWARYKRDEYMNNIAQVDRIMAAQRRALDRLYEESEDLYNEAIMPDLQLLPYTISGPVATPPIKDYESPDGEYIDVSKKWDN

Similarity

Belongs to the cyclin family.

Uniprot

H9J5P9   I4DKY1   A0A2A4J3L2   A0A2H1WZA9   A0A194RKC1   A0A212F2Y0   + More
A0A194PGP8   U5EFX2   A0A0K8TSB5   A0A1B0CY61   A0A084WR16   A0A0A1X823   A0A1L8DRS8   A0A1L8DRA6   A0A182QWZ8   A0A084WFK5   A0A0L0C4A7   A0A182W413   A0A2P8XMM4   A0A182PLM9   A0A0C9R2U3   A0A182RVS9   A0A182LYW2   A0A3B0JNM1   A0A182YQW4   A0A182JUW4   A0A026WQ92   E1ZXL6   E2BLK1   A0A182N049   A0A182VK94   A0A2J7R4T4   B4NAY0   Q170X2   A0A1I8PID9   W5J1N0   V5GR12   T1EAH3   A0A182HIJ9   A0A182H0Q5   A0A182IS59   A0A336L344   A0A182KZA3   Q7QER3   D6WU16   A0A023EJE3   A0A0M3QXR2   A0A0T6AU57   A0A1S4FHQ6   A0A336M717   A0A182UC70   A0A1W4XBW2   A0A1L8EGU6   A0A1L8EGQ3   A0A1Y1NL65   A0A182WY70   N6UHL5   Q9VGP7   J3JWE9   A0A2M3ZJH1   A0A195F2T7   A0A2M4AV29   A0A2M4AV23   A0A067R3P4   U4U168   A0A2M4C0Y1   B4HIA1   A0A1A9V4P7   A0A1W4USY0   B4PM48   A0A0J7L1R7   W8BJ38   A0A1A9WT43   F4X3T7   A0A1B0G2N9   B4QU45   A0A182T3M0   A0A0A9YP58   A0A1A9XHK3   A0A0K8SNV1   B4K9U2   B3NZF7   B3LXD0   A0A1Q3FBL9   A0A1B6KI01   A0A1B6JCZ3   A0A1W4X2F0   A0A226EL63   A0A182FHU4   B0WN54   E9ISY7   A0A1B6DHD1   A0A1A9ZLX7   A0A151XJC0   A0A1B6F113   A0A1I8MXJ5   A0A2S2Q9T0   A0A195BGL8   Q293S8  

Pubmed

19121390    22651552    26354079    22118469    26369729    24438588    + More
25830018    26108605    29403074    25244985    24508170    30249741    20798317    17994087    17510324    20920257    23761445    26483478    20966253    12364791    14747013    17210077    18362917    19820115    24945155    28004739    23537049    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22516182    24845553    17550304    24495485    21719571    25401762    26823975    21282665    25315136    15632085   

EMBL

BABH01024961    AK401949    BAM18571.1    NWSH01003221    PCG66737.1    ODYU01012170    + More
SOQ58342.1    KQ460045    KPJ18278.1    AGBW02010665    OWR48084.1    KQ459604    KPI92213.1    GANO01003698    JAB56173.1    GDAI01000572    JAI17031.1    AJWK01035490    ATLV01025887    KE525402    KFB52660.1    GBXI01007417    JAD06875.1    GFDF01005049    JAV09035.1    GFDF01005143    JAV08941.1    AXCN02002023    ATLV01023372    KE525342    KFB48999.1    JRES01000936    KNC27067.1    PYGN01001711    PSN33246.1    GBYB01010529    JAG80296.1    AXCM01003165    OUUW01000008    SPP83834.1    KK107139    QOIP01000003    EZA57866.1    RLU24667.1    GL435066    EFN74099.1    GL449033    EFN83438.1    NEVH01007402    PNF35846.1    CH964232    EDW80944.1    CH477463    EAT40537.1    ADMH02002165    ETN58122.1    GALX01001882    JAB66584.1    GAMD01000412    JAB01179.1    APCN01003991    JXUM01101760    KQ564673    KXJ71920.1    UFQS01001426    UFQT01001426    SSX10823.1    SSX30503.1    AAAB01008846    EAA06344.3    KQ971352    EFA07359.2    GAPW01004528    JAC09070.1    CP012526    ALC46373.1    LJIG01022834    KRT78477.1    UFQT01000550    SSX25181.1    GFDG01000888    JAV17911.1    GFDG01000887    JAV17912.1    GEZM01000679    JAV98318.1    APGK01025660    KB740600    ENN80091.1    AE014297    AY071609    AAF54629.1    AAL49231.1    BT127567    AEE62529.1    GGFM01007986    MBW28737.1    KQ981856    KYN34492.1    GGFK01011300    MBW44621.1    GGFK01011299    MBW44620.1    KK852718    KDR17788.1    KB631982    ERL87614.1    GGFJ01009690    MBW58831.1    CH480815    EDW42616.1    CM000160    EDW96914.1    LBMM01001273    KMQ96606.1    GAMC01013264    JAB93291.1    GL888624    EGI58884.1    CCAG010000815    CM000364    EDX13376.1    GBHO01008777    GBHO01008776    JAG34827.1    JAG34828.1    GBRD01010906    GDHC01012367    JAG54918.1    JAQ06262.1    CH933806    EDW15590.1    CH954181    EDV49530.1    CH902617    EDV42774.1    GFDL01010136    JAV24909.1    GEBQ01029193    JAT10784.1    GECU01010644    JAS97062.1    LNIX01000003    OXA58199.1    DS232007    EDS31485.1    GL765434    EFZ16308.1    GEDC01012187    JAS25111.1    KQ982074    KYQ60516.1    GECZ01025925    JAS43844.1    GGMS01005306    MBY74509.1    KQ976490    KYM83366.1    CM000070    EAL29136.2   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000053268    UP000092461    + More
UP000030765    UP000075886    UP000037069    UP000075920    UP000245037    UP000075885    UP000075900    UP000075883    UP000268350    UP000076408    UP000075881    UP000053097    UP000279307    UP000000311    UP000008237    UP000075884    UP000075903    UP000235965    UP000007798    UP000008820    UP000095300    UP000000673    UP000075840    UP000069940    UP000249989    UP000075880    UP000075882    UP000007062    UP000007266    UP000092553    UP000075902    UP000192223    UP000076407    UP000019118    UP000000803    UP000078541    UP000027135    UP000030742    UP000001292    UP000078200    UP000192221    UP000002282    UP000036403    UP000091820    UP000007755    UP000092444    UP000000304    UP000075901    UP000092443    UP000009192    UP000008711    UP000007801    UP000198287    UP000069272    UP000002320    UP000092445    UP000075809    UP000095301    UP000078540    UP000001819   

PRIDE

H9J5P9    Q9VGP7   

Pfam

PF09812   MRP-L28        + More
PF00134   Cyclin_N

Interpro

IPR019192   Ribosomal_L28/L40_mit        + More
IPR039145   MRPL40       
IPR036915   Cyclin-like_sf       
IPR006671   Cyclin_N       
IPR013763   Cyclin-like       
IPR028759   Cyclin-Q       

SUPFAM

SSF47954   SSF47954       

CDD

cd00043  CYCLIN

ProteinModelPortal

H9J5P9   I4DKY1   A0A2A4J3L2   A0A2H1WZA9   A0A194RKC1   A0A212F2Y0   + More
A0A194PGP8   U5EFX2   A0A0K8TSB5   A0A1B0CY61   A0A084WR16   A0A0A1X823   A0A1L8DRS8   A0A1L8DRA6   A0A182QWZ8   A0A084WFK5   A0A0L0C4A7   A0A182W413   A0A2P8XMM4   A0A182PLM9   A0A0C9R2U3   A0A182RVS9   A0A182LYW2   A0A3B0JNM1   A0A182YQW4   A0A182JUW4   A0A026WQ92   E1ZXL6   E2BLK1   A0A182N049   A0A182VK94   A0A2J7R4T4   B4NAY0   Q170X2   A0A1I8PID9   W5J1N0   V5GR12   T1EAH3   A0A182HIJ9   A0A182H0Q5   A0A182IS59   A0A336L344   A0A182KZA3   Q7QER3   D6WU16   A0A023EJE3   A0A0M3QXR2   A0A0T6AU57   A0A1S4FHQ6   A0A336M717   A0A182UC70   A0A1W4XBW2   A0A1L8EGU6   A0A1L8EGQ3   A0A1Y1NL65   A0A182WY70   N6UHL5   Q9VGP7   J3JWE9   A0A2M3ZJH1   A0A195F2T7   A0A2M4AV29   A0A2M4AV23   A0A067R3P4   U4U168   A0A2M4C0Y1   B4HIA1   A0A1A9V4P7   A0A1W4USY0   B4PM48   A0A0J7L1R7   W8BJ38   A0A1A9WT43   F4X3T7   A0A1B0G2N9   B4QU45   A0A182T3M0   A0A0A9YP58   A0A1A9XHK3   A0A0K8SNV1   B4K9U2   B3NZF7   B3LXD0   A0A1Q3FBL9   A0A1B6KI01   A0A1B6JCZ3   A0A1W4X2F0   A0A226EL63   A0A182FHU4   B0WN54   E9ISY7   A0A1B6DHD1   A0A1A9ZLX7   A0A151XJC0   A0A1B6F113   A0A1I8MXJ5   A0A2S2Q9T0   A0A195BGL8   Q293S8  

PDB

6NU3     E-value=6.81945e-15,     Score=191

KEGG

101740994    K17421 large subunit ribosomal protein L40 | (RefSeq) 39S ribosomal protein L40, mitochondrial

GO

GO:0005762   GO:0005761   GO:0032543   GO:0006412   GO:0003735  

PANTHER

PTHR13359   PTHR10026:SF70  

Length:

158

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00097

Exp number, first 60 AAs:

0

Total prob of N-in:

0.55771

inside

1  -  158

 

 

Pi

318.474762

Theta

192.050333

Tajima's D

2.57099

CLR

0.107627

CSRT

0.948652567371631

Interpretation

Uncertain