SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15076
Pre Gene Modal
BGIBMGA004844
Annotation
PREDICTED:_uncharacterized_protein_LOC101741141_isoform_X3_[Bombyx_mori]
Location
Bomo_Chr25(-):4142530-4165871      View in EpiBrowser
Location in the cell
Mitochondrial   Reliability : 1.248 PlasmaMembrane   Reliability : 1.083
 

Sequence

CDS
ATGTGGGCCGCCAGACGTGACGCAGGAACCTTGAGGACGGTGCTAGCTAGACTGGCGGCAATGAGGACTCGTACTGACAGGCTCCGCTTGCTCCCCGCTACCCTGCACTTCGATATGCAACCAGCGCTCAACCTACACGCATTAATCGTAAATCAACGTCCGGAAGTCTGGGAGGGTTCAGAGTTCATTCTGAGCTGCATGGCTTACGGATCTCCACATATCGCCTTCACTTGGTACAAAGATGGAGTCAAAATCAATTTTAATGGAACAACAAGAGAAATCTGGACTAGGACAGTCTCAGAAGACGCCCTCGGTCGTCGTATGTCGGTACTCGGAGTAGCTGAAGCCAAAAGACTGGACGGCGGCAAGTGGTCCTGCACCGCTGATGACGCCGGCAGAAGACGTTGCAGAGCCCTAATGCTGGCAGTCCTGAGACCACCGAATATACGGCTTGTACCTTCCACTTTAACAGTAAACAAGGGAGAAAACGTGAGCATCACGTGTTTGGCAGGAGCAAGTAGAATGCACGGTGCTTTGGGGTTCAGTTGGGCTCGAGAACGCGGTCTTTTACCTCTGAATCCAGGTCGAGAAGTGTGGGAAGACTTGTACCCTGCTGGAAGTGTGTTGAAATTGTATAACGTTCAGAAATCTGGTGAATTCCGTTGCCAAGTATCTTCAATAGCCGGTACTAACTCTAAGGGAGTAACAATGTGGGCTCTTGGAACTAAAGACGAGGCTTGTGAAAGTGACGCTTCGCATGGTCTCCGATGGCCGAAAACTGCCCCTGGTGCTCATGCCTCAGCGTCTTGCCCTCCTGGACACACTGGAGAAACTACTAGATTCTGCGAACCGAAAACGACCCAGCACGGTGTTAAATGGAAGCTACCAGATTTCTCCGGATGCGTCGCGGATTCATTAAACGACATTTACGAGCAATTCACTCACATCTACTTTGGGTATTCCTGGAATAACGTATCGAACGTAGCCCGTCAGTATGGAGCGGTCCTTCGCTCCCTACCATCACATCCAGGCGAAGGGACGCTTCCCCTCCACCAGACAAAAGAAATGCTGCACTATTTGTTATCTTCCGCTGGACGACCGGCAGACAGAATGCAAAGTGCTGAGCATCTTCTCAAGATATACGACACTTTGCTCAAGCATCCTGATGCCTTTTTGGATGAAGAGAAAGTCTACGATCTTCAAAACTCGATAGCAGAGACAGCCGGAATGCGAACCAACCTCGACACACATTTCCACGAGTTTACAGTCAAAACGAAACCAGCGAGAGAAGACAGTGCTGCACATTTTGATCTTCAGTCAGGTCCTATTGGATCTGAGGAGTGGATGCTGACGTCAGCCGGCACTGAATTACTCGCTAGAACGGGAAACGCTACCGTTGTTGCAGTATTGTATCACAATTTGGGAACAAGATTACCTTCTTTAAGGCGATCTGTAGAGTATAACCAGTCGTCTTCTAGGAGCGGTCGTGAAATGGAGTATCTGGTGTCATCCCAACAGATCCAATTGTACGCCACTGGTCCCGGAGTCGACAATAGCTTACAACATACGGTGAACCTATTATTCACTCATGTCAAGAACTATAGCGCTGTTGCATCAAAACTCGCCTGTGGTCTTCGCACTCCGTCTGACCCAAGAACATGGATCACCAAAGCTTGTGAAGTGAAAGTTCCTGAAGCAACGCACGTGGCTTGCAAATGTCGAGGGCTTGGTACATATGCACTATTCACGATAGCCAGATCTACGTTGACCGAGGCAGAAAAGGACCTGCGCGGTATTGTGAAGATAACGGTCAGTCTGGGAGGAGCGATGTGCTTAGCTGCAGCAGCTTTGCAACTGCTGGCACTGATTGCTGGGACTAAGGCGAAGCTACCTGTACTACTGAAAGCTGCGACTGCGGGGACTCACTCAGCTGCGATGCTGACCCTGCTAGAGTGTGACACAAGACAGGATGAAGCGTGTCCGGGTACTCTGGGATGGGTGTGCGCGGCGTGCTGGTGCGCGGGGTGCGCGGCGCTTTGTGCGCAGCCACTACTGCTGCAGGCCGAGCTCGCTGGTAGAGCTCAGAAGGCACCGTCTGTCGGACTACTTGCCGGTGTGTGCACATTGTCGTGGCTGACGGCACGGATATGGGGCGGCGCGCCCCTGCAAGTGGGGGCGGGTGCGGCCGCAGTGTGCGCGGCAGGATGCGCGCTACTCGCCTCTCTCTGCTTGGCGCTAGCACTGTGCGCCGCTGCGAGACTGCGAGCCATCTCACACAAGGTCCCCGCTGATAGGAGAAGCTATATCAATGACAGAGGGCGCGTCGTTCGTCACACATTAATACTTCTAGTGTCAACATCGGCAGCTCAAGCAGCGGGTGTGGCTTACGCACAGCCCGGGGAACGGACTGTGGCGCACGTCGCCGCGCTATCCATCGCAGCCCTGGCCAACGGTATAGCGATGCTGGCTTGCTACGTGATAAGAGATGAAGAGTGTCTGCGTTCAGTCCGAAAAGTCCTGACACTGACTCCGGCTCGAGACTGGAGAGATGAACCCACCGGAGATACCTCGCTGAGTTTATACATAAAACAAGGAGGTGAAGTTGAGAGTCGCGGCGGCGTCGGCATATTTGAAAGCACATCGTCACCGGTTTCACCAATTTCCTCATACTGGCGAGCTCCTGGACTTGAAAGCCCTACTAGATTACACAGGCGTCAATCGACTCCAGACAGTCGTGCCGACATCGTCCGTTGTGTAGAATATAAGTGTCCAGTGAGAGGGCCATCGGGTGGACAAGCTGTCTGCGACCTCATCCCTCGCGGCGAGTACGACGCACGTGTGTGTCTAGAGCTCGGTGTGATGCGCCCTCCACCGCCCCCCACCCTCCTCACCTGCTCCCTCGACATCGAACCCAACAAGCGAATCGTCCACCCCACCGACACGTGCACCATTTGCGTCCACTCCAATCCGGACGTCTCTAAAATTCCCTCGCCTCCAATCAAAAGCTGCCTCAAAAAAAATAAGAATCTATCTTCGAGCTCCTCCCTGCCATCCATCGAGGCCAGCAAATCCGATATCGACCAGATCAACAGAGAATGGAAGAAAGCCTACGATTCCCCGGAAACTGATAAAATGCTCAACAAAATCTCGAGCGATCTGGATTTTCTATTGAATAGGAATCAAGAGAGCAAAGCCGCTCTCGACCAAATAGAAGAGGCTCCGACTTAG
Protein
MWAARRDAGTLRTVLARLAAMRTRTDRLRLLPATLHFDMQPALNLHALIVNQRPEVWEGSEFILSCMAYGSPHIAFTWYKDGVKINFNGTTREIWTRTVSEDALGRRMSVLGVAEAKRLDGGKWSCTADDAGRRRCRALMLAVLRPPNIRLVPSTLTVNKGENVSITCLAGASRMHGALGFSWARERGLLPLNPGREVWEDLYPAGSVLKLYNVQKSGEFRCQVSSIAGTNSKGVTMWALGTKDEACESDASHGLRWPKTAPGAHASASCPPGHTGETTRFCEPKTTQHGVKWKLPDFSGCVADSLNDIYEQFTHIYFGYSWNNVSNVARQYGAVLRSLPSHPGEGTLPLHQTKEMLHYLLSSAGRPADRMQSAEHLLKIYDTLLKHPDAFLDEEKVYDLQNSIAETAGMRTNLDTHFHEFTVKTKPAREDSAAHFDLQSGPIGSEEWMLTSAGTELLARTGNATVVAVLYHNLGTRLPSLRRSVEYNQSSSRSGREMEYLVSSQQIQLYATGPGVDNSLQHTVNLLFTHVKNYSAVASKLACGLRTPSDPRTWITKACEVKVPEATHVACKCRGLGTYALFTIARSTLTEAEKDLRGIVKITVSLGGAMCLAAAALQLLALIAGTKAKLPVLLKAATAGTHSAAMLTLLECDTRQDEACPGTLGWVCAACWCAGCAALCAQPLLLQAELAGRAQKAPSVGLLAGVCTLSWLTARIWGGAPLQVGAGAAAVCAAGCALLASLCLALALCAAARLRAISHKVPADRRSYINDRGRVVRHTLILLVSTSAAQAAGVAYAQPGERTVAHVAALSIAALANGIAMLACYVIRDEECLRSVRKVLTLTPARDWRDEPTGDTSLSLYIKQGGEVESRGGVGIFESTSSPVSPISSYWRAPGLESPTRLHRRQSTPDSRADIVRCVEYKCPVRGPSGGQAVCDLIPRGEYDARVCLELGVMRPPPPPTLLTCSLDIEPNKRIVHPTDTCTICVHSNPDVSKIPSPPIKSCLKKNKNLSSSSSLPSIEASKSDIDQINREWKKAYDSPETDKMLNKISSDLDFLLNRNQESKAALDQIEEAPT

Summary

Uniprot
A0A194RQH7   A0A194PFQ5   A0A2A4JL25   A0A2H1VU93   A0A2H1WUP5  
Pubmed
26354079   
EMBL
KQ460045    KPJ18281.1    KQ459604    KPI92211.1    NWSH01001211    PCG72110.1    + More
ODYU01004484    SOQ44407.1    ODYU01011157    SOQ56727.1   
Proteomes
UP000053240    UP000053268    UP000218220   
Pfam
PF00008   EGF        + More
PF13895   Ig_2
PF00047   ig
Interpro
IPR036445   GPCR_2_extracell_dom_sf        + More
IPR013032   EGF-like_CS       
IPR000742   EGF-like_dom       
IPR036179   Ig-like_dom_sf       
IPR001879   GPCR_2_extracellular_dom       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR035914   Sperma_CUB_dom_sf       
IPR000859   CUB_dom       
IPR013151   Immunoglobulin       
SUPFAM
SSF49854   SSF49854        + More
SSF111418   SSF111418       
SSF48726   SSF48726       
Gene 3D
2.60.120.290     2.60.40.10     4.10.1240.10    
ProteinModelPortal
A0A194RQH7   A0A194PFQ5   A0A2A4JL25   A0A2H1VU93   A0A2H1WUP5  
PDB
4YFG     E-value=4.80657e-06,     Score=124

Ontologies

KEGG
101741141    no KO assigned | (RefSeq) uncharacterized LOC101741141
GO
GO:0016021   GO:0004930   GO:0005515   GO:0016020   GO:0005856   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Topology

Length:
1075
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
128.30058
Exp number, first 60 AAs:
0.03919
Total prob of N-in:
0.13776
outside
1  -  601
TMhelix
602  -  624
inside
625  -  663
TMhelix
664  -  686
outside
687  -  725
TMhelix
726  -  748
inside
749  -  774
TMhelix
775  -  797
outside
798  -  806
TMhelix
807  -  827
inside
828  -  1075
 
 

Population Genetic Test Statistics

Pi
260.998195
Theta
196.246634
Tajima's D
0.781202
CLR
0.172794
CSRT
0.59822008899555
Interpretation
Uncertain
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