Gene

KWMTBOMO15075  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004828

Annotation

PREDICTED:_lysM_and_putative_peptidoglycan-binding_domain-containing_protein_2_[Amyelois_transitella]

Location

Bomo_Chr25(+):4112322-4134086      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.939

CDS

ATGTCATATTTAAAGACGTCAAATATGGAGGAGGAACGTCTCTTTGACGAGAGAGTTTCTATTCGAGAGTCTGCTCGACCATTAAAAAAGTATGGAAGCACCTGCAACCACATGAAAAGGAACGAGGAATACATTAAACATGTTATGTCTAAAGGGGACACCTTGCAAGGGATCGCATTAAAATATGGTGTAACTATGGAGAAAATAAGAAGGGCCAATAGATTGTTCGCTACGGACAGTTTGTTTTTGAGAGAATATTTATTGATTCCGGTGACCAAAGATTCTCCTTTTTACGAAAACGGGGAACGCGTAACCGAGCTGCCTCCTCCGAATCATCGCGCCTCCATAGCAGGCATGCCAACTAGAAACAGTTTTTCGCCTGGAAGCCCCGATGAGAAGAAGAGTTTTGACGAATTCCTGAACAGAGTAGACTCATCATTGGCTGACATAAAGCGACATGTAGAAAAAACAAAAGAAAACAGTGAGTTCGTGAAGGATATAGATGAGGGTTACGTGAGGCACAGGCCGACGGCGCGACTCAGACAGTCCGCGTCTATGGGCGCTTCGTCGTCTTACAATGAAGTAATACCGCCTCCCTTGCCGCCTCCGCCCGTCTCCCTCACCCAGGGCAGACGCGTCGACTCCTCGCTCAGACGGCTGGAGAGGACACACGACGACCTATTCCAGTTGTAG

Protein

MSYLKTSNMEEERLFDERVSIRESARPLKKYGSTCNHMKRNEEYIKHVMSKGDTLQGIALKYGVTMEKIRRANRLFATDSLFLREYLLIPVTKDSPFYENGERVTELPPPNHRASIAGMPTRNSFSPGSPDEKKSFDEFLNRVDSSLADIKRHVEKTKENSEFVKDIDEGYVRHRPTARLRQSASMGASSSYNEVIPPPLPPPPVSLTQGRRVDSSLRRLERTHDDLFQL

Uniprot

A0A2W1BW63   A0A2A4JGP8   A0A3S2M9D7   A0A212FLH8   A0A194PM71   A0A2P8ZF91   + More
A0A0K8TMA5   A0A2J7R2U3   A0A195B408   A0A1B0D8H2   A0A0L7RI84   E2BKP7   A0A158NTD8   A0A1B6HND2   A0A151IY23   A0A2A3E1U5   F4W3Y9   A0A088AAE6   A0A151JTL5   A0A232ERJ8   A0A0N0U6W8   A0A151X1E4   A0A0T6B560   A0A195CJX2   A0A026VVB0   A0A154PCP3   A0A1L8E3R5   E9I9R0   U5ERF8   E2APP0   R4WPT8   A0A1Y1LL00   D6WU87   A0A0A9WVW5   A0A1B6C969   A0A3L8DQL3   A0A1J1HNZ0   A0A1L8E3R7   A0A1L8E3Y9   N6TQ23   B5DSS7   A0A1S4F0W6   Q17J12   A0A0J7KL67   E0VUG1   A0A224XUL6   A0A0V0GA36   A0A023F7Z6   R4G5D2   A0A1Q3FVG9   B0WJG1   A0A182QB98   A0A182VYU0   A0A2M4ASC7   A0A2S2QFQ4   W5JIV5  

Pubmed

28756777    22118469    26354079    29403074    26369729    20798317    + More
21347285    21719571    28648823    24508170    21282665    23691247    28004739    18362917    19820115    25401762    30249741    23537049    15632085    17994087    17510324    20566863    25474469    20920257    23761445   

EMBL

KZ149918    PZC77854.1    NWSH01001594    PCG70764.1    RSAL01000008    RVE53954.1    + More
AGBW02007763    OWR54591.1    KQ459604    KPI92210.1    PYGN01000075    PSN55169.1    GDAI01002325    JAI15278.1    NEVH01007825    PNF35159.1    KQ976625    KYM78944.1    AJVK01012625    AJVK01012626    KQ414585    KOC70539.1    GL448819    EFN83745.1    ADTU01025848    GECU01031509    JAS76197.1    KQ980778    KYN13212.1    KZ288444    PBC25665.1    GL887491    EGI70985.1    KQ981885    KYN33865.1    NNAY01002610    OXU20952.1    KQ435727    KOX77982.1    KQ982585    KYQ54222.1    LJIG01009775    KRT82406.1    KQ977642    KYN01026.1    KK107847    EZA47471.1    KQ434870    KZC09557.1    GFDF01000707    JAV13377.1    GL761846    EFZ22647.1    GANO01003767    JAB56104.1    GL441572    EFN64591.1    AK417686    BAN20901.1    GEZM01054515    JAV73591.1    KQ971352    EFA06782.1    GBHO01031690    GBHO01016359    GBRD01006260    JAG11914.1    JAG27245.1    JAG59561.1    GEDC01027297    JAS10001.1    QOIP01000005    RLU22552.1    CVRI01000011    CRK89250.1    GFDF01000706    JAV13378.1    GFDF01000708    JAV13376.1    APGK01025694    KB740600    KB631982    ENN80108.1    ERL87601.1    CH475602    EDY70846.2    CH477235    EAT46699.1    LBMM01006052    KMQ90981.1    DS235786    EEB17017.1    GFTR01004234    JAW12192.1    GECL01001407    JAP04717.1    GBBI01001349    JAC17363.1    ACPB03015538    GAHY01000645    JAA76865.1    GFDL01003435    JAV31610.1    DS231959    EDS29135.1    AXCN02001171    GGFK01010362    MBW43683.1    GGMS01007351    MBY76554.1    ADMH02001372    ETN62724.1   

Proteomes

UP000218220    UP000283053    UP000007151    UP000053268    UP000245037    UP000235965    + More
UP000078540    UP000092462    UP000053825    UP000008237    UP000005205    UP000078492    UP000242457    UP000007755    UP000005203    UP000078541    UP000215335    UP000053105    UP000075809    UP000078542    UP000053097    UP000076502    UP000000311    UP000007266    UP000279307    UP000183832    UP000019118    UP000030742    UP000001819    UP000008820    UP000036403    UP000009046    UP000015103    UP000002320    UP000075886    UP000075920    UP000000673   

Pfam

PF01476   LysM

Interpro

IPR036779   LysM_dom_sf        + More
IPR018392   LysM_dom       

Gene 3D

3.10.350.10    

CDD

cd00118  LysM

ProteinModelPortal

A0A2W1BW63   A0A2A4JGP8   A0A3S2M9D7   A0A212FLH8   A0A194PM71   A0A2P8ZF91   + More
A0A0K8TMA5   A0A2J7R2U3   A0A195B408   A0A1B0D8H2   A0A0L7RI84   E2BKP7   A0A158NTD8   A0A1B6HND2   A0A151IY23   A0A2A3E1U5   F4W3Y9   A0A088AAE6   A0A151JTL5   A0A232ERJ8   A0A0N0U6W8   A0A151X1E4   A0A0T6B560   A0A195CJX2   A0A026VVB0   A0A154PCP3   A0A1L8E3R5   E9I9R0   U5ERF8   E2APP0   R4WPT8   A0A1Y1LL00   D6WU87   A0A0A9WVW5   A0A1B6C969   A0A3L8DQL3   A0A1J1HNZ0   A0A1L8E3R7   A0A1L8E3Y9   N6TQ23   B5DSS7   A0A1S4F0W6   Q17J12   A0A0J7KL67   E0VUG1   A0A224XUL6   A0A0V0GA36   A0A023F7Z6   R4G5D2   A0A1Q3FVG9   B0WJG1   A0A182QB98   A0A182VYU0   A0A2M4ASC7   A0A2S2QFQ4   W5JIV5  

PDB

2DJP     E-value=3.38837e-10,     Score=153

KEGG

101741341    no KO assigned | (RefSeq) lysM and putative peptidoglycan-binding domain-containing protein 2

GO

Length:

230

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00328

Exp number, first 60 AAs:

0.00105

Total prob of N-in:

0.09546

outside

1  -  230

 

 

Pi

325.583277

Theta

183.826113

Tajima's D

2.713585

CLR

0.229538

CSRT

0.963101844907755

Interpretation

Uncertain