Gene

KWMTBOMO15073

Annotation

PREDICTED:_DNA-directed_RNA_polymerase_II_subunit_RPB7_[Bombyx_mori]

Location

Bomo_Chr25(+):3992123-3995417      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.224

CDS

ATGTTCTACCACATTTCATTGGAGCACGAAATTTTGTTACATCCGAAATATTTCGGTCCACAACTATTGGAGACAGTCAAACAGAAGCTATACACTGATGTGGAAGGCACCTGTACTGGCAAATATGGATTTGTCATCGCGGTAACTCAAATAGACAATATCGGAGCTGGTCTCATACAACATGGACAAGGGTTTGTCATGTACCCTGTTAAATACAAAGCTGTTGTGTTCAGACCATTCAAAGGAGAAGTTTTAGATGGTATTGTCACACAAGTAAACAAGGTTGGCATGTTTGCGCAAATAGGACCTCTCAAATGTTTTATATCCCATCATTCAATACCAGACTATATGGAGTTCTGTCCTAATGTAAATCCTCCATGTTATAAGAGTAAACAAGAGGATAGCGTAATACAAGAAGAGGATGTGATCCGATTAAAGATTGTTGGTACGAGGGTTGACGCGAGTGGCATTTTTGCAATCGGGACTTTAATTGGAGACTATTTGGGATTAGTACCACAATAA

Protein

MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLVPQ

Uniprot

A0A3S2P711   A0A212FLH2   S4PY38   A0A2H1V319   A0A0N1IG03   A0A1B6L8Z8   + More
A0A1B6GBY6   A0A1B6J0V5   A0A2P8YA02   A0A1B0GJX1   A0A067RDI5   A0A158NG75   A0A3L8DML9   A0A088A5G7   E2BSS5   A0A158NG74   A0A1L8DH60   A0A1L8DGE3   A0A2A3EFN0   A0A158NG76   A0A1B6C9B5   R4WDH1   E2A8N1   A0A1Q3F5F2   B0W2B6   A0A023EIT6   U5EZE8   A0A0K8TR24   A0A1A9UF30   W8C2R5   A0A0K8VYE4   A0A034VDE0   A0A336LWM1   A0A1A9WPE4   A0A1W4W126   A0A3B0KF61   B4GMM3   B4PS78   B3MXA0   B4NBB5   B3P0R9   Q294T7   Q17FM2   A0A1I8MRS1   A0A1I8PGZ9   A0A1J1INY2   B4KAG6   B4LY27   B4JGB3   A0A151XAJ5   F4WND5   A0A195E7F9   E9IUC2   B4QZ40   B4HE07   Q9VFB5   A0A195FF43   A0A1S3D9R2   A0A195CI60   A0A026W4R6   A0A2R5LG59   A0A293LNZ1   A0A1Z5LAR2   A0A1Y1KSE3   J3JWM6   A0A1W4XVW2   A0A0A9XF56   A0A182IJK0   D6WKA0   A0A2H8TPG3   C4WX48   A0A182MSY7   A0A182W015   A0A2M3ZDW6   A0A2M4AZ49   A0A2M4C182   A0A182QSB8   A0A182NZ95   W5JCB3   A0A182FRA3   A0A0L0C7Q5   A0A224XM44   A0A0V0G707   A0A069DPQ9   R4G4G3   A0A0P4VQW7   A0A182SIU1   A0A182UY17   A0A182ULF9   Q7PYV3   A0A0M4EPL3   A0A2S2NC37   T1EA59   A0A2C9JLP0   A0A224YWX7   A0A131YYD6   L7M6R9   A0A087UYJ5   W4YQK1   A0A383ZHV8  

Pubmed

22118469    23622113    26354079    29403074    24845553    21347285    + More
30249741    20798317    23691247    24945155    26483478    26369729    24495485    25348373    17994087    17550304    15632085    23185243    17510324    25315136    21719571    21282665    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24508170    28528879    28004739    22516182    23537049    25401762    26823975    18362917    19820115    20920257    23761445    26108605    26334808    27129103    12364791    14747013    17210077    15562597    28797301    26830274    25576852   

EMBL

RSAL01000008    RVE53952.1    AGBW02007763    OWR54593.1    GAIX01003963    JAA88597.1    + More
ODYU01000443    SOQ35221.1    KQ460594    KPJ13916.1    GEBQ01019795    JAT20182.1    GECZ01009837    JAS59932.1    GECU01035050    GECU01014898    JAS72656.1    JAS92808.1    PYGN01000765    PSN41071.1    AJWK01022430    KK852771    KDR16879.1    ADTU01015041    QOIP01000006    RLU21657.1    GL450246    EFN81256.1    GFDF01008384    JAV05700.1    GFDF01008555    JAV05529.1    KZ288256    PBC30547.1    GEDC01027468    JAS09830.1    AK417698    BAN20913.1    GL437652    EFN70218.1    GFDL01012259    JAV22786.1    DS231826    EDS28731.1    JXUM01119701    GAPW01005039    KQ566317    JAC08559.1    KXJ70242.1    GANO01000926    JAB58945.1    GDAI01000781    JAI16822.1    GAMC01006424    JAC00132.1    GDHF01008453    JAI43861.1    GAKP01017636    GAKP01017632    JAC41316.1    UFQS01000257    UFQT01000257    SSX02079.1    SSX22456.1    OUUW01000008    SPP83691.1    CH479185    EDW38097.1    CM000160    EDW97498.1    CH902629    EDV35323.1    CH964232    EDW81079.1    CH954181    EDV48967.1    CM000070    CH673789    EAL28877.1    EDY71554.1    CH477270    EAT45321.1    CVRI01000057    CRL01943.1    CH933806    EDW15679.2    CH940650    EDW66893.1    CH916369    EDV92582.1    KQ982339    KYQ57392.1    GL888236    EGI64305.1    KQ979568    KYN21031.1    GL765940    EFZ15830.1    CM000364    EDX12868.1    CH480815    EDW42099.1    AE014297    BT023312    BT029405    AAF55145.2    AAY55728.1    ABK57062.1    KQ981625    KYN39008.1    KQ977721    KYN00393.1    KK107487    EZA50039.1    GGLE01004366    MBY08492.1    GFWV01004849    MAA29579.1    GFJQ02002692    JAW04278.1    GEZM01075052    JAV64313.1    APGK01044137    APGK01044138    BT127644    KB741020    AEE62606.1    ENN75129.1    GBHO01040544    GBHO01040541    GBHO01024242    GBHO01004096    GBRD01001596    GDHC01015268    JAG03060.1    JAG03063.1    JAG19362.1    JAG39508.1    JAG64225.1    JAQ03361.1    KQ971342    EFA03964.1    GFXV01004289    MBW16094.1    ABLF02013830    AK342446    BAH72468.1    AXCM01001384    GGFM01005879    MBW26630.1    GGFK01012743    MBW46064.1    GGFJ01009945    MBW59086.1    AXCN02000272    ADMH02001839    ETN60963.1    JRES01000776    KNC28423.1    GFTR01002870    JAW13556.1    GECL01002405    JAP03719.1    GBGD01003213    JAC85676.1    ACPB03017117    GAHY01000796    JAA76714.1    GDKW01001170    JAI55425.1    AAAB01008987    EAA00949.2    CP012526    ALC47740.1    GGMR01002134    MBY14753.1    GAMD01000722    JAB00869.1    GFPF01007318    MAA18464.1    GEDV01004373    JAP84184.1    GACK01006181    JAA58853.1    KK122288    KFM82434.1    AAGJ04116095   

Proteomes

UP000283053    UP000007151    UP000053240    UP000245037    UP000092461    UP000027135    + More
UP000005205    UP000279307    UP000005203    UP000008237    UP000242457    UP000000311    UP000002320    UP000069940    UP000249989    UP000078200    UP000091820    UP000192221    UP000268350    UP000008744    UP000002282    UP000007801    UP000007798    UP000008711    UP000001819    UP000008820    UP000095301    UP000095300    UP000183832    UP000009192    UP000008792    UP000001070    UP000075809    UP000007755    UP000078492    UP000000304    UP000001292    UP000000803    UP000078541    UP000079169    UP000078542    UP000053097    UP000019118    UP000192223    UP000075880    UP000007266    UP000007819    UP000075883    UP000075920    UP000075886    UP000075884    UP000000673    UP000069272    UP000037069    UP000015103    UP000075901    UP000075903    UP000075902    UP000007062    UP000092553    UP000076420    UP000054359    UP000007110    UP000261681   

PRIDE

Q9VFB5   

Pfam

PF00575   S1        + More
PF03876   SHS2_Rpb7-N
PF01693   Cauli_VI

Interpro

IPR036898   RNA_pol_Rpb7-like_N_sf        + More
IPR005576   Rpb7-like_N       
IPR012340   NA-bd_OB-fold       
IPR003029   S1_domain       
IPR035437   SNase_OB-fold_sf       
IPR011320   RNase_H1_N       
IPR037056   RNase_H1_N_sf       
IPR009027   Ribosomal_L9/RNase_H1_N       
IPR022967   S1_dom       

SUPFAM

SSF88798   SSF88798        + More
SSF50249   SSF50249       
SSF55658   SSF55658       

Gene 3D

3.30.1490.120     2.40.50.90     3.40.970.10    

ProteinModelPortal

A0A3S2P711   A0A212FLH2   S4PY38   A0A2H1V319   A0A0N1IG03   A0A1B6L8Z8   + More
A0A1B6GBY6   A0A1B6J0V5   A0A2P8YA02   A0A1B0GJX1   A0A067RDI5   A0A158NG75   A0A3L8DML9   A0A088A5G7   E2BSS5   A0A158NG74   A0A1L8DH60   A0A1L8DGE3   A0A2A3EFN0   A0A158NG76   A0A1B6C9B5   R4WDH1   E2A8N1   A0A1Q3F5F2   B0W2B6   A0A023EIT6   U5EZE8   A0A0K8TR24   A0A1A9UF30   W8C2R5   A0A0K8VYE4   A0A034VDE0   A0A336LWM1   A0A1A9WPE4   A0A1W4W126   A0A3B0KF61   B4GMM3   B4PS78   B3MXA0   B4NBB5   B3P0R9   Q294T7   Q17FM2   A0A1I8MRS1   A0A1I8PGZ9   A0A1J1INY2   B4KAG6   B4LY27   B4JGB3   A0A151XAJ5   F4WND5   A0A195E7F9   E9IUC2   B4QZ40   B4HE07   Q9VFB5   A0A195FF43   A0A1S3D9R2   A0A195CI60   A0A026W4R6   A0A2R5LG59   A0A293LNZ1   A0A1Z5LAR2   A0A1Y1KSE3   J3JWM6   A0A1W4XVW2   A0A0A9XF56   A0A182IJK0   D6WKA0   A0A2H8TPG3   C4WX48   A0A182MSY7   A0A182W015   A0A2M3ZDW6   A0A2M4AZ49   A0A2M4C182   A0A182QSB8   A0A182NZ95   W5JCB3   A0A182FRA3   A0A0L0C7Q5   A0A224XM44   A0A0V0G707   A0A069DPQ9   R4G4G3   A0A0P4VQW7   A0A182SIU1   A0A182UY17   A0A182ULF9   Q7PYV3   A0A0M4EPL3   A0A2S2NC37   T1EA59   A0A2C9JLP0   A0A224YWX7   A0A131YYD6   L7M6R9   A0A087UYJ5   W4YQK1   A0A383ZHV8  

PDB

6O9L     E-value=2.28587e-76,     Score=722

KEGG

101741478    K03015 DNA-directed RNA polymerase II subunit RPB7 | (RefSeq) DNA-directed RNA polymerase II subunit

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0003899   GO:0003676   GO:0006351   GO:0005665   GO:0016021   GO:0006366   GO:0060213   GO:0006367   GO:0045948   GO:0031369   GO:0003727   GO:0000932   GO:0000291   GO:0003697   GO:0006260   GO:0008270   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Length:

173

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.62758

Exp number, first 60 AAs:

0.06225

Total prob of N-in:

0.07390

outside

1  -  173

 

 

Pi

298.177071

Theta

204.32404

Tajima's D

0.524337

CLR

1.371004

CSRT

0.525773711314434

Interpretation

Uncertain