Gene

KWMTBOMO15072  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004846

Annotation

small_GTP_binding_protein_RAB8_[Bombyx_mori]

Location

Bomo_Chr25(-):3982969-3991682      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.243 Mitochondrial   Reliability : 1.166

CDS

ATGGCAAAAACTTACGATTGTTTATTCAAATTACTTCTAATCGGAGATTCGGGAGTGGGAAAAACATCAATACTATTTAGATTTTCTGAAGATGCATTTAACATCTCCTTTATATCCACAATTGGTATCGACTTTAAAATTCGAACAATAGACCTTGATGGCAAAAAAGTTAAATTACAAATATGGGATACTGCTGGTCAAGAGAGATTCCGTACAATAACAACAGCATACTACCGTGGTTCTATGGGAATTATGCTTGTCTACGATGTTACGAATGAGAAGAGCTTTGAAAACATTAAGAATTGGATTAGGAACATTGAAGAGAATGCCAGTGCTGATGTTGAGAAAATGATACTTGGAAATAAGTGTGACTTAGATTCTCAAAGACAGGTATCAAAGGAGCGAGGTGAACAATTAGCCATAGAATATCAGATAAAATTTGTGGAGACATCAGCAAAAGACTCGTTAAATGTTGAATATGCATTTTACACTTTAGCCAGGGACATAAAAGCGAAAATGGAAAAGAAACAGGAAGCGAGTAATCCGTCGGGCGGTAGGAGTGGCGTCCACAAGCCGACGCTGAACGACGCTCGCAAGCCGGTGACGTGGCTGTCGCGTTGCAGCGTGCTTTGA

Protein

MAKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQERFRTITTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERGEQLAIEYQIKFVETSAKDSLNVEYAFYTLARDIKAKMEKKQEASNPSGGRSGVHKPTLNDARKPVTWLSRCSVL

Uniprot

Q1HQB6   A0A0N1I9D0   A0A194PM64   A0A212FLH4   S4PY78   A0A2A4JDF2   + More
A0A2H1V4E6   I4DNS8   H9J5Q6   A0A0M8ZQ36   A0A0L7R0D1   G3LF44   A0A154NZQ5   A0A0J7LAH2   D6WP52   A0A195EFP1   F4WGA8   A0A195B6Y5   A0A151JY29   E2AZF2   A0A026WTL0   A0A151WJW1   N6SZJ3   V5IAH0   E2B8I5   A0A3L8D9Q1   A0A195CPJ3   A0A232FIJ0   K7J1J1   A0A2J7PV62   E9GUJ7   A0A0P5R8P7   A0A1A9XDC5   A0A1B0C0B7   A0A1A9X110   D3TQA6   A0A1B6DXA7   A0A1I8M0L0   A0A1I8QEZ2   A0A1L8EH47   A0A2W1BU31   A0A0L0CFD5   A0A0C9QCZ7   A0A1Y1NF54   A0A165VFU0   A0A1B6GTU6   A0A1B6LJF8   A0A1B0C8M2   A0A1L8DV34   A0A1L8DV33   W8BD57   A0A0K8VWG5   A0A034VUG5   A0A0K8TS87   B4MLG7   A0A084W017   A0A182JN04   A0A0A1WWU9   A0A0P4WAV4   U5EZ96   B4LBM1   B4L0W9   A0A0M4EM34   A0A3B0JU77   B4H930   B5DPR3   B4IXP2   B3M8T8   B4IIR8   B3NDZ9   B4QRC2   O18338   B4PFW9   A0A182NQT1   J9JN61   A0A0L7L849   A0A1W4VU41   A0A023F5S8   A0A0P4W1W9   T1E2D6   A0A2S2Q7E1   A0A0A9VV46   A0A182YHW3   T1DP62   A0A2M3ZHX1   A0A2M4AN18   W5J8J8   A0A182FS40   A0A069DXB4   A0A023ELP6   A0A1Q3FWZ4   Q16TQ1   A0A2H8TZG0   A0A182X9B8   A0A3F2YUQ3   A0A182PRW4   A0A182Q2V0   A0A182UXJ3   A0A182K6B0   Q7PUB2  

Pubmed

26354079    22118469    23622113    22651552    19121390    18362917    + More
19820115    21719571    20798317    24508170    23537049    30249741    28648823    20075255    21292972    20353571    25315136    28756777    26108605    28004739    24495485    25348373    26369729    17994087    24438588    25830018    15632085    23185243    22936249    9074639    10731132    12537568    12537572    12537573    12537574    14722103    16110336    17569856    17569867    26109357    26109356    17550304    26227816    25474469    27129103    24330624    25401762    25244985    20920257    23761445    26334808    24945155    17510324    20966253    12364791    14747013    17210077   

EMBL

DQ443136    DQ525203    ABF51225.1    ABF71468.1    KQ460594    KPJ13917.1    + More
KQ459604    KPI92205.1    AGBW02007763    OWR54594.1    GAIX01003763    JAA88797.1    NWSH01001797    PCG70117.1    ODYU01000443    SOQ35222.1    AK403119    BAM19568.1    BABH01025026    KQ436240    KOX67343.1    KQ414670    KOC64302.1    JN315689    AEO51738.1    KQ434781    KZC04478.1    LBMM01000112    KMR04887.1    KQ971352    EFA07283.1    KQ978957    KYN27063.1    GL888128    EGI66875.1    KQ976579    KYM80022.1    KQ981578    KYN39756.1    GL444207    EFN61191.1    KK107111    EZA59001.1    KQ983039    KYQ47985.1    APGK01058332    KB741288    ENN70678.1    GALX01001200    JAB67266.1    GL446334    EFN87994.1    QOIP01000011    RLU17235.1    KQ977481    KYN02412.1    NNAY01000155    OXU30492.1    NEVH01020984    PNF20226.1    GL732566    EFX76917.1    GDIQ01111054    GDIP01077266    LRGB01000115    JAL40672.1    JAM26449.1    KZS20766.1    JXJN01023506    CCAG010002318    EZ423608    ADD19884.1    GEDC01006986    JAS30312.1    GFDG01000853    JAV17946.1    KZ149918    PZC77851.1    JRES01000484    KNC30902.1    GBYB01001189    JAG70956.1    GEZM01003834    JAV96532.1    KT984795    AMZ00347.1    GECZ01003923    JAS65846.1    GEBQ01016238    GEBQ01011288    JAT23739.1    JAT28689.1    AJWK01001113    GFDF01003793    JAV10291.1    GFDF01003792    JAV10292.1    GAMC01009949    GAMC01009943    JAB96612.1    GDHF01009098    JAI43216.1    GAKP01011971    JAC46981.1    GDAI01000384    JAI17219.1    CH963847    EDW72823.1    ATLV01019081    KE525262    KFB43561.1    AXCP01002644    GBXI01011287    JAD03005.1    GDRN01057067    JAI65745.1    GANO01001189    JAB58682.1    CH940647    EDW70831.1    CH933809    EDW19219.1    CP012525    ALC44635.1    OUUW01000002    SPP77259.1    CH479226    EDW35245.1    CH379069    EDY73603.1    KRT07915.1    KRT07916.1    KRT07917.1    CH916366    EDV97504.1    CH902618    EDV41089.1    CH480844    EDW49839.1    CH954178    EDV52423.1    CM000363    CM002912    EDX11135.1    KMZ00629.1    AE014296    AY069671    D84347    AB112933    AAF49101.1    AAL39816.1    AFH04508.1    BAA21711.1    BAD07038.1    CM000159    EDW95266.1    KRK02338.1    ABLF02030773    JTDY01002387    KOB71519.1    GBBI01002184    JAC16528.1    GDKW01000966    JAI55629.1    GALA01000819    JAA94033.1    GGMS01004470    MBY73673.1    GBHO01044035    GBRD01017495    JAF99568.1    JAG48332.1    GAMD01002215    JAA99375.1    GGFM01007360    MBW28111.1    GGFK01008677    MBW41998.1    ADMH02002101    GGFL01004304    ETN59119.1    MBW68482.1    GBGD01002905    JAC85984.1    GAPW01004409    JAC09189.1    GFDL01002915    JAV32130.1    CH477643    EAT37877.1    EAT37879.1    EJY57852.1    GFXV01007346    MBW19151.1    AXCN02001500    AAAB01008987    EAA01802.5   

Proteomes

UP000053240    UP000053268    UP000007151    UP000218220    UP000005204    UP000053105    + More
UP000053825    UP000076502    UP000036403    UP000007266    UP000078492    UP000007755    UP000078540    UP000078541    UP000000311    UP000053097    UP000075809    UP000019118    UP000008237    UP000279307    UP000078542    UP000215335    UP000002358    UP000235965    UP000000305    UP000076858    UP000092443    UP000092460    UP000091820    UP000092444    UP000095301    UP000095300    UP000037069    UP000092461    UP000007798    UP000030765    UP000075880    UP000008792    UP000009192    UP000092553    UP000268350    UP000008744    UP000001819    UP000001070    UP000007801    UP000001292    UP000008711    UP000000304    UP000000803    UP000002282    UP000075884    UP000007819    UP000037510    UP000192221    UP000076408    UP000000673    UP000069272    UP000008820    UP000076407    UP000075882    UP000075885    UP000075886    UP000075903    UP000075881    UP000007062   

PRIDE

Q1HQB6    H9J5Q6    O18338   

Pfam

PF00071   Ras

Interpro

IPR001806   Small_GTPase        + More
IPR027417   P-loop_NTPase       
IPR005225   Small_GTP-bd_dom       
IPR025662   Sigma_54_int_dom_ATP-bd_1       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

Q1HQB6   A0A0N1I9D0   A0A194PM64   A0A212FLH4   S4PY78   A0A2A4JDF2   + More
A0A2H1V4E6   I4DNS8   H9J5Q6   A0A0M8ZQ36   A0A0L7R0D1   G3LF44   A0A154NZQ5   A0A0J7LAH2   D6WP52   A0A195EFP1   F4WGA8   A0A195B6Y5   A0A151JY29   E2AZF2   A0A026WTL0   A0A151WJW1   N6SZJ3   V5IAH0   E2B8I5   A0A3L8D9Q1   A0A195CPJ3   A0A232FIJ0   K7J1J1   A0A2J7PV62   E9GUJ7   A0A0P5R8P7   A0A1A9XDC5   A0A1B0C0B7   A0A1A9X110   D3TQA6   A0A1B6DXA7   A0A1I8M0L0   A0A1I8QEZ2   A0A1L8EH47   A0A2W1BU31   A0A0L0CFD5   A0A0C9QCZ7   A0A1Y1NF54   A0A165VFU0   A0A1B6GTU6   A0A1B6LJF8   A0A1B0C8M2   A0A1L8DV34   A0A1L8DV33   W8BD57   A0A0K8VWG5   A0A034VUG5   A0A0K8TS87   B4MLG7   A0A084W017   A0A182JN04   A0A0A1WWU9   A0A0P4WAV4   U5EZ96   B4LBM1   B4L0W9   A0A0M4EM34   A0A3B0JU77   B4H930   B5DPR3   B4IXP2   B3M8T8   B4IIR8   B3NDZ9   B4QRC2   O18338   B4PFW9   A0A182NQT1   J9JN61   A0A0L7L849   A0A1W4VU41   A0A023F5S8   A0A0P4W1W9   T1E2D6   A0A2S2Q7E1   A0A0A9VV46   A0A182YHW3   T1DP62   A0A2M3ZHX1   A0A2M4AN18   W5J8J8   A0A182FS40   A0A069DXB4   A0A023ELP6   A0A1Q3FWZ4   Q16TQ1   A0A2H8TZG0   A0A182X9B8   A0A3F2YUQ3   A0A182PRW4   A0A182Q2V0   A0A182UXJ3   A0A182K6B0   Q7PUB2  

PDB

5SZI     E-value=1.94521e-84,     Score=793

KEGG

732877    K07901 Ras-related protein Rab-8A | (RefSeq) small GTP binding protein RAB8

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0003924   GO:0005525   GO:0006886   GO:0017157   GO:0030140   GO:0006904   GO:0008021   GO:0048210   GO:0072659   GO:0005886   GO:0032482   GO:0005768   GO:0032869   GO:0009306   GO:0055037   GO:0045202   GO:0008582   GO:0072657   GO:0043025   GO:0005794   GO:0061865   GO:0016192   GO:0005737   GO:0031982   GO:0007264   GO:0005634   GO:0006260   GO:0008270   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

Length:

210

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.3735

Exp number, first 60 AAs:

0.34928

Total prob of N-in:

0.16519

outside

1  -  210

 

 

Pi

294.082126

Theta

197.095842

Tajima's D

1.558594

CLR

0.736227

CSRT

0.800409979501025

Interpretation

Uncertain