Gene

KWMTBOMO15070  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004847

Annotation

Protein_transport_protein_sec13_[Operophtera_brumata]

Location

Bomo_Chr25(-):3979204-3980632      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.062

CDS

ATGATCACTGTTTTGAATACTATTGATACCGGCCATGAAGATATGATACACGACGCCGAACTGGATTATTACGGACTAAAACTAGCTACATGTTCTTCGGATAATTCAGTGAAAATATACGACATTAAGAATGGTACACAAACATTGGCTGCTGATTTGAAGGGTCATTTTGGCCCCGTGTGGCAGGTAGCTTGGGCTCATCCCAAGTATGGGAACCTATTAGCGTCATGCTCTTATGACAGGAAAGTTATCATATGGAAAGAGTCTGGAGAGTGGACTAAACTATACGAATACACTGGACACGAAAGCTCTGTGAACTCTGTTGCGTGGGCGCCGGCTGAGTACGGCTTAATCCTCGCTTGTTGTAGTTCAGATGGCTCAATCTCTATCATACAATATTCACAAGATACTGGTAATTGGGACGTAAAAAAGATAACGGGTGCACATGCCATTGGTGTTAATTCTATTAGTTGGTGCCCAGCTTTATCTGCAGATTTGAACTTAGATCCGCTTACCAATAAAGATGCTCCAAAGAGATTAGTTACTGGAGGGTGTGATAATTTAATCAAGATTTGGAGAGAGCAAGGTGATCAATGGGTTGAAGAGAACAGATTAGAGTTGCACATTGATTGGGTCAGAGATGTAGCGTGGGCACCCTCTCTGGGATTACAACGTTCCATGATTGCCAGCTGCTCCCAAGACAAGAGGGTTGTCATATGGTCTAGTGATGATAATGTATCTTGGACACCAACAATATTAAACACATTTGATGATGTAGTATGGAGTGTTAGCTGGTCTCTCACTGGCAACATCTTGGCTGTATCAGGAGGAGATAACAAAGTCAGCCTTTGGCGTGAGAGCACTGATGGCCAGTGGTTATGTATTAGTGAAGTTGCCAAAGGTTTGGGCCAAACACCCAATGATGAAAGAAGCACACTTTGA

Protein

MITVLNTIDTGHEDMIHDAELDYYGLKLATCSSDNSVKIYDIKNGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIWKESGEWTKLYEYTGHESSVNSVAWAPAEYGLILACCSSDGSISIIQYSQDTGNWDVKKITGAHAIGVNSISWCPALSADLNLDPLTNKDAPKRLVTGGCDNLIKIWREQGDQWVEENRLELHIDWVRDVAWAPSLGLQRSMIASCSQDKRVVIWSSDDNVSWTPTILNTFDDVVWSVSWSLTGNILAVSGGDNKVSLWRESTDGQWLCISEVAKGLGQTPNDERSTL

Similarity

Belongs to the WD repeat SEC13 family.

Uniprot

H9J5Q7   A0A2A4JEV4   A0A2W1BS05   A0A2H1V4N6   A0A1E1WUK8   A0A0L7L7Q3   + More
A0A212FLI7   A0A0N1PGB1   A0A194PGP3   S4PGN5   A0A067R3P9   A0A2J7R4V0   A0A2P8YYC4   E0VSJ7   A0A2A3EBH3   A0A3L8D4G4   A0A1B6EBQ0   A0A087ZT90   A0A026W6F1   A0A0N0U659   A0A0K8TPP9   A0A0L7QMA4   A0A1W4WYC5   A0A154P387   E2AIY7   E2BSL9   A0A1B6KCN6   A0A182FQA5   A0A1B6ENE1   A0A182IXW9   A0A1B6I5B3   A0A084WE54   A0A2M3Z532   A0A336MQV4   A0A2M4A8G0   A0A2M4BTU1   A0A2M3ZH86   A0A2M4CYF7   A0A182TA80   A0A182NFT6   Q16MP1   A0A182QE55   A0A182JXI0   A0A182VGW8   A0A182LRJ1   A0A023EPQ7   A0A182PAG2   A0A182R373   A0A195E2J5   F4WIY4   A0A151I5F4   A0A158NMP1   A0A182XWV3   A0A182U101   Q7QBG4   A0A182HJ69   A0A182XE55   A0A182VXF3   E3UKP7   A0A182HAX7   R4V418   A0A151X1T4   A2I487   V5GGA9   K7JB81   A0A182LCD0   A0A195CMY6   A0A0J7LAE4   D6WSX7   A0A232F0J0   W5JVR8   N6UHM1   C3YVL3   B0W8I8   A0A1J1I4H5   A0A1Y1MTI3   A0A0L0BUT5   A0A1L8ECZ4   A0A1I8PQS6   A0A0K8U9D5   A0A034WQV2   A0A1Q3FBX9   R4WQU9   A0A0A1X0A0   A0A1B0CTU9   A0A1B0DMQ9   T1JDY6   A0A1L8DXH6   T1PC36   W8C5M7   E9FZL2   A0A0P5FUC2   A0A0P5HL79   A0A162DGD4   A0A0N8AU50   A0A1A9W2N3   A0A0P5YH07   A0A0P5EMQ3   A0A0P5XI87   V4BAM6  

Pubmed

19121390    28756777    26227816    22118469    26354079    23622113    + More
24845553    29403074    20566863    30249741    24508170    26369729    20798317    24438588    17510324    24945155    26483478    21719571    21347285    25244985    12364791    14747013    17210077    20075255    20966253    18362917    19820115    28648823    20920257    23761445    23537049    18563158    28004739    26108605    25348373    23691247    25830018    25315136    24495485    21292972    23254933   

EMBL

BABH01025027    NWSH01001797    PCG70114.1    KZ149918    PZC77849.1    ODYU01000443    + More
SOQ35224.1    GDQN01000548    JAT90506.1    JTDY01002387    KOB71518.1    AGBW02007763    OWR54596.1    KQ460594    KPJ13918.1    KQ459604    KPI92203.1    GAIX01003582    JAA88978.1    KK852718    KDR17793.1    NEVH01007402    PNF35855.1    PYGN01000288    PSN49243.1    DS235751    EEB16353.1    KZ288292    PBC29123.1    QOIP01000014    RLU14903.1    GEDC01001994    JAS35304.1    KK107405    EZA51201.1    KQ435736    KOX77058.1    GDAI01001507    JAI16096.1    KQ414894    KOC59735.1    KQ434809    KZC06331.1    GL439921    EFN66576.1    GL450241    EFN81265.1    GEBQ01030770    JAT09207.1    GECZ01030328    JAS39441.1    AXCP01007734    GECU01025604    JAS82102.1    ATLV01023152    KE525341    KFB48498.1    GGFM01002878    MBW23629.1    UFQT01000993    SSX28338.1    GGFK01003772    MBW37093.1    GGFJ01007328    MBW56469.1    GGFM01007110    MBW27861.1    GGFL01006192    MBW70370.1    CH477855    EAT35599.1    AXCN02000244    AXCM01002727    JXUM01110751    GAPW01002575    KQ565441    JAC11023.1    KXJ70970.1    KQ979776    KYN19132.1    GL888178    EGI65847.1    KQ976431    KYM87626.1    ADTU01020650    AAAB01008879    EAA08392.4    APCN01002128    HM449921    ADO33056.1    JXUM01031533    KQ560925    KXJ80324.1    KC740749    AGM32573.1    KQ982588    KYQ54142.1    EF070590    ABM55656.1    GALX01005467    JAB62999.1    KQ977532    KYN02073.1    LBMM01000091    KMR05010.1    KQ971352    EFA06335.1    NNAY01001403    OXU24090.1    ADMH02000324    ETN66954.1    APGK01034997    KB740923    ENN78132.1    GG666557    EEN55736.1    DS231859    EDS39038.1    CVRI01000039    CRK94492.1    GEZM01021465    JAV88992.1    JRES01001300    KNC23796.1    GFDG01002201    JAV16598.1    GDHF01029106    JAI23208.1    GAKP01001928    JAC57024.1    GFDL01010047    JAV24998.1    AK418051    BAN21266.1    GBXI01009553    JAD04739.1    AJWK01028010    AJVK01016920    JH432114    GFDF01002958    JAV11126.1    KA645680    AFP60309.1    GAMC01001657    JAC04899.1    GL732528    EFX87077.1    GDIQ01251757    JAJ99967.1    GDIQ01248748    JAK02977.1    LRGB01001581    KZS11394.1    GDIQ01242659    JAK09066.1    GDIP01071707    JAM32008.1    GDIQ01270322    JAJ81402.1    GDIP01072966    JAM30749.1    KB199699    ESP04556.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000007151    UP000053240    UP000053268    + More
UP000027135    UP000235965    UP000245037    UP000009046    UP000242457    UP000279307    UP000005203    UP000053097    UP000053105    UP000053825    UP000192223    UP000076502    UP000000311    UP000008237    UP000069272    UP000075880    UP000030765    UP000075901    UP000075884    UP000008820    UP000075886    UP000075881    UP000075903    UP000075883    UP000069940    UP000249989    UP000075885    UP000075900    UP000078492    UP000007755    UP000078540    UP000005205    UP000076408    UP000075902    UP000007062    UP000075840    UP000076407    UP000075920    UP000075809    UP000002358    UP000075882    UP000078542    UP000036403    UP000007266    UP000215335    UP000000673    UP000019118    UP000001554    UP000002320    UP000183832    UP000037069    UP000095300    UP000092461    UP000092462    UP000095301    UP000000305    UP000076858    UP000091820    UP000030746   

PRIDE

H9J5Q7   

Pfam

PF00400   WD40        + More
PF05511   ATP-synt_F6
PF12894   ANAPC4_WD40

Interpro

IPR001680   WD40_repeat        + More
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR037596   Sec13       
IPR036322   WD40_repeat_dom_sf       
IPR037363   Sec13/Seh1_fam       
IPR019775   WD40_repeat_CS       
IPR008387   ATP_synth_f6_mt       
IPR036204   ATP_synth_f6_sf_mt       
IPR024977   Apc4_WD40_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF111357   SSF111357       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9J5Q7   A0A2A4JEV4   A0A2W1BS05   A0A2H1V4N6   A0A1E1WUK8   A0A0L7L7Q3   + More
A0A212FLI7   A0A0N1PGB1   A0A194PGP3   S4PGN5   A0A067R3P9   A0A2J7R4V0   A0A2P8YYC4   E0VSJ7   A0A2A3EBH3   A0A3L8D4G4   A0A1B6EBQ0   A0A087ZT90   A0A026W6F1   A0A0N0U659   A0A0K8TPP9   A0A0L7QMA4   A0A1W4WYC5   A0A154P387   E2AIY7   E2BSL9   A0A1B6KCN6   A0A182FQA5   A0A1B6ENE1   A0A182IXW9   A0A1B6I5B3   A0A084WE54   A0A2M3Z532   A0A336MQV4   A0A2M4A8G0   A0A2M4BTU1   A0A2M3ZH86   A0A2M4CYF7   A0A182TA80   A0A182NFT6   Q16MP1   A0A182QE55   A0A182JXI0   A0A182VGW8   A0A182LRJ1   A0A023EPQ7   A0A182PAG2   A0A182R373   A0A195E2J5   F4WIY4   A0A151I5F4   A0A158NMP1   A0A182XWV3   A0A182U101   Q7QBG4   A0A182HJ69   A0A182XE55   A0A182VXF3   E3UKP7   A0A182HAX7   R4V418   A0A151X1T4   A2I487   V5GGA9   K7JB81   A0A182LCD0   A0A195CMY6   A0A0J7LAE4   D6WSX7   A0A232F0J0   W5JVR8   N6UHM1   C3YVL3   B0W8I8   A0A1J1I4H5   A0A1Y1MTI3   A0A0L0BUT5   A0A1L8ECZ4   A0A1I8PQS6   A0A0K8U9D5   A0A034WQV2   A0A1Q3FBX9   R4WQU9   A0A0A1X0A0   A0A1B0CTU9   A0A1B0DMQ9   T1JDY6   A0A1L8DXH6   T1PC36   W8C5M7   E9FZL2   A0A0P5FUC2   A0A0P5HL79   A0A162DGD4   A0A0N8AU50   A0A1A9W2N3   A0A0P5YH07   A0A0P5EMQ3   A0A0P5XI87   V4BAM6  

PDB

5A9Q     E-value=3.40165e-106,     Score=983

KEGG

101741617    K14004 protein transport protein SEC13 | (RefSeq) protein SEC13 homolog

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)
04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)
04150    mTOR signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0015031   GO:0090114   GO:0030127   GO:0000139   GO:0005198   GO:1904263   GO:0016021   GO:0005829   GO:0031080   GO:0015078   GO:0000276   GO:0015986   GO:0005515   GO:0003887   GO:0005634   GO:0006260   GO:0008270   GO:0000166   GO:0003677   GO:0008408   GO:0005112   GO:0015930  

PANTHER

PTHR11024   PTHR11024:SF2  

Length:

313

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01669

Exp number, first 60 AAs:

0.00027

Total prob of N-in:

0.03644

outside

1  -  313

 

 

Pi

291.072954

Theta

227.704005

Tajima's D

0.823017

CLR

0.016193

CSRT

0.613969301534923

Interpretation

Uncertain