SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15068  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004848
Annotation
PREDICTED:_nucleoporin_GLE1_[Plutella_xylostella]
Location
Bomo_Chr25(-):3932947-3935102      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.865
 

Sequence

CDS
ATGAATAGTACAAAGAATTCATCTTACGACAGCTACAATGATAGACTTGGAGAAATTCTCAATAGAAGCATTACTTCGAAAATGAGAGATTCTAGTATTGACGAAACTTTAGCGGGGTTTGGCAAATTAAGAATATCAGCCCTTACTAAAGCCGTTGAATTAAGTCCTTTAGTAAAAGAAGCGACCATAGGACCTAACAGTCCTGCAAAGAAAGAATTAATTTATGAAGAAAAACAAATCCCCGCCAAAATTGAACCGTTGCCAGAGGACCTTGTTGAAGATAAGCTCCGAGGGGATCTCGGTTATAATCTCATAATGAAAGAATGTGAAGCACAGTTGCATCAATTATCAGTGGAATTTTTCAGAAAATCTTTTGAACAGATGATTTGTAAAAGGGCGGAAATAATGAACAAATGCTTTCAGAAGTATAGCGAACAACGTGAGCGCAGAGACATGAAATACCATAAACGGAAACTACAGCTACAGAAGGATTTTCATGAAAATGACAATTTAAATGTATTAAAAATAGCCAAATTAGATGAACAGAACAACAGTGCAATGATCAACAGGCAGACAATTGACAATATGAATAGAATCTTAGAAGAACAAAATAAAGCCACAGCTCGATTTGCGGCAATAACTGACAGTCATACTAAAATATGCATCTGTTATAATGAAATCACAAACGTAATAGCTTCGGAGCCTCTGTCCCAACAGGTTTGTGACAAATACATACCGACTATCAAAACAGTCATTTCTAATATTAGTGCTATCATGGAACTTTGTAAAAATGCATCTGTTACCGACAAAGAGGTAAAACAAGCAGAAATATTATCTTTGAACTTAGAAAATGTACTAAAAAAGATTTTAAATGAAATTAATGAAATTAAAGAAAAGGAAAGGATTTTGAAAGATAATGAAAGGGAATTATTGAAATTGAAAGAAATAGAAGAAAAGAAAGCTAGAGAGTTGGCTGAAAAGGAAGCGCAAGAAACAAAGGTTCCTGAGGTGACAAAAACTGTTAAAATAGTTCGTCCTGATAAAACAAAGGTCAAACCCATGTTCTACTCCAGTAAAAACTACAACTATTTTAAAGAGTTAAGCAACTTTATGATAAGTTATGAAGCACAATACAGTGATTTATTAGAGAATGTAAACATGAAAAAGTTTAGATTTGACTGCCAAAAAGCTGTGAACACTCCAGTGAATGCATTGTCTTCAGTTAGTAGTACACACATGAAGGACAAATATGAAAAGCTGTACAAACTACTCAAAGGAGAGAGTGTTCAAGTGTTAGACATATATTTTACTGTAACTCAGCATCCACATGGAGTGGCATACTGTACAGCACTCTTAGCCAAGAAAATAGTGAGGCAAGGGGAGTTATTGGTTTCAAGTCATCCTGAAGCTGCATTCCCATTAGCAGCTGTAGTTATAGCACTTTGGGCTTCTTTCCCAGATTTTGGAAAATTATTGCTAGCCAATTTTCACAAGCAGTGCCCTTATTTAGTTCCCATGTTTATGCCCCAAAAAGAAGGTCAAACAGATAAGGAATTCTACTTGTCTAGAGGGTATACATATAATGATGAAGGTGTAGTTGAAAAACAAGATAAATTCTTGAAAAGAATGTCAGGTATCTTTAGACTCATCTGTGCTATTTGGATAATGAGCACCCCCAAATTTATAAACATACCTAACCCCCATGGATTACAATATGGATGGCAGTGGCTTGCATCTTTCATCAACTTGAAACCAGAACCTGATATATCTGCCACTCTTCTTTATGATTTCTTTACAGTGTGTGGGTCTAAATTTCTCTTACATTATAAGATACAGTTTATTAAGTTAATAAAATTAATTAGCACAGATTATTTGGAAGTTTTACAAAACATTGATGAAGGAGGGCCGAAAACAAGACTGGAAGTACTCTTACAAAACATACTGAAGACCGGACACATTGATCCTCCCAGTGGTTTGTTACAATCAGATATATGGTGA
Protein
MNSTKNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMINRQTIDNMNRILEEQNKATARFAAITDSHTKICICYNEITNVIASEPLSQQVCDKYIPTIKTVISNISAIMELCKNASVTDKEVKQAEILSLNLENVLKKILNEINEIKEKERILKDNERELLKLKEIEEKKARELAEKEAQETKVPEVTKTVKIVRPDKTKVKPMFYSSKNYNYFKELSNFMISYEAQYSDLLENVNMKKFRFDCQKAVNTPVNALSSVSSTHMKDKYEKLYKLLKGESVQVLDIYFTVTQHPHGVAYCTALLAKKIVRQGELLVSSHPEAAFPLAAVVIALWASFPDFGKLLLANFHKQCPYLVPMFMPQKEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIPNPHGLQYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDYLEVLQNIDEGGPKTRLEVLLQNILKTGHIDPPSGLLQSDIW

Summary

Uniprot
H9J5Q8   A0A0N0PCG4   A0A3S2P0M5   A0A0L7K8E1   A0A2A4JFD5   A0A2W1BXC0   + More
A0A2H1X1M8   A0A212FLG9   A0A1W4XJC1   A0A1Q3EZ63   D6WQJ6   Q16T83  
Pubmed
19121390    26354079    26227816    28756777    22118469    18362917    + More
19820115    17510324   
EMBL
BABH01025029    BABH01025030    KQ460594    KPJ13921.1    RSAL01000008    RVE53947.1    + More
JTDY01010238    KOB59582.1    NWSH01001797    PCG70112.1    KZ149918    PZC77847.1    ODYU01012306    SOQ58554.1    AGBW02007763    OWR54598.1    GFDL01014454    JAV20591.1    KQ971354    EFA06063.1    CH477658    EAT37671.1   
Proteomes
UP000005204    UP000053240    UP000283053    UP000037510    UP000218220    UP000007151    + More
UP000192223    UP000007266    UP000008820   
PRIDE
H9J5Q8   
Pfam
PF07817   GLE1
Interpro
IPR012476   GLE1        + More
IPR038506   GLE1-like_sf       
Gene 3D
1.25.40.510    
ProteinModelPortal
H9J5Q8   A0A0N0PCG4   A0A3S2P0M5   A0A0L7K8E1   A0A2A4JFD5   A0A2W1BXC0   + More
A0A2H1X1M8   A0A212FLG9   A0A1W4XJC1   A0A1Q3EZ63   D6WQJ6   Q16T83  
PDB
6B4J     E-value=1.67631e-51,     Score=514

Ontologies

KEGG
101742144    K18723 nucleoporin GLE1 | (RefSeq) nucleoporin GLE1
GO
GO:0016973   GO:0005643   GO:0005737   GO:0000822   GO:0006449   GO:0031369   GO:0005543   GO:0006406   GO:0044614   GO:0006446   GO:0003682   GO:0003677   GO:0003700   GO:0006355   GO:0008270   GO:0043565   GO:0005112   GO:0015930  
PANTHER
PTHR12960  

Topology

Length:
665
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.31209
Exp number, first 60 AAs:
0.00022
Total prob of N-in:
0.01664
outside
1  -  665
 
 

Population Genetic Test Statistics

Pi
269.247348
Theta
201.112775
Tajima's D
0.479436
CLR
131.862945
CSRT
0.513574321283936
Interpretation
Uncertain
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