Silkworm Genome Informatics Database

Gene

KWMTBOMO15067

Pre Gene Modal

BGIBMGA004849

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_DDB1-_and_CUL4-associated_factor_10-like_[Plutella_xylostella]

Location

Bomo_Chr25(-):3918415-3931822 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.987

CDS

ATGGGTAATCGAGATATTTTCAATTCAAGAAATTCTGCATTCAGCCCTCACAGGCTACGCGATTGGGAGATGGGATTTCAGAAGCCCATAGGGGCGGACGATGCGATGGCAAAGAGTCTGTACTGTGGTATGAAACCCATAGCTTCATGGGAATCTGACAATACAAGAACTCCTCCCACTGGAGGAGTTTTTAACCTTGAATTTTCACCTGACGGATCACTGTTAGTGGCTGCTTGTGAAAAGAAATCCTTACAAATCTTTGATCCTTTAACACACCAAAGGACACATTGTGTGACCGAAGCACATTCGGATTGTGTAAATTGTGTTAAATTCTTAGACGCTAGGATGTTTGCCACATGCTCCGATGACACAACAGTAGCACTATGGGATGTACGTAACATGAAGAAGAAGATACGTTCCCTCTTAGGTCATCTCAGATGGGTCAAAAGTATAGAATTCTCGGTTAAAGATAAATTATTAGTTACGTCTGGTTTGGATGGCAGCATATACACATGGGATATAAATTCATATACAGAATGTAATCTTGTATACCAAAGAGTATTTCATACGTCTAGTTTGATGAGGTGTCGCCTTTCGCCCGACGCAAGGAAAATGGTGCTGTGCACAACTGGAGGTTTAATAATTATTATACACGACCTTAATTTATCAACTTTAGCTCAAGATTTACATGGGTTCAAGCCGAACCTGTACAAACTGATGCAAATGAGCAAACAGCTGATACCGATAGCAGCAATGTACGATCATCTCTTTGATAGTACACGGAAGGAGAACAGAATTGAGTTTGTCTCGGACTTCCCCGACGGTAATGATGCGGAGGTCATAAGTGCATTGCAGATACACCCGCAAGGATGGAGTGCGTTAAGTCGGAATCTAAGTCACGAGGATAGGTCCGAGTGGACGTGCATTCACGACATCCAGCCGGAGGACGCGTGCCCGACGAAGCCGACGCGCGACACGAGCGCCCCCCCGCCGCGCCGCAACATGCGTCGCTTCCGTCTGCACCTGCGACTGCGACCTTCTCGGACGGAGACTGCAGCAGCTCCGAGTGAGGCGGACCCGGAGCCCGAGCCGGGCCCGTCCGGCGCCGCCGCCTCCGCCACCTCCAGGCTCTCACCGCAAGGCCTGTCGAGTATCCAAAACGACCTATGGGAGGCGTCGATAACGGTCAAACAAAACAGAATGCTTCAAGACATTTATAGCAGGGGCCAGGTACGTCGTAACTTCAACATGCAGCGGATAACCGGGATTAATACAGGGATCACTCCGCCCTCGACGCTTCGAGCGAGGCACCCAAGAGATTCCACATTTACGACGCCTTCGACGTCTGGCCACTACCCACGCGAAGTCATCATAGATAAATGCGTTTCATCGAAACCCTTCATCAGACAGAACAAGGATAGACTGCTTTACTACATTGAAGAAACGAATGAAGGCAGAGGATTCATAAAGGAATTGTGTTACTCTGCGGACGGTCGCATCGTGTGTTCGCCATTCGGGTGCGGCATGCGGCTCCTGGCTCTCAACCAGCAGTGCAGTGAGCTCCCCCACCTCGTCCAGGACTCGTCGGGGCCCAGGGTCATGACCGAAGTTGGCCAGAGTTTGGGCATTCACCAAGATCTCGTAGTTAGTTCGCGGTTCAGTCCTCGATATCACATGCTCGTCACGGGCTGTCTAGACGGCAAGATAGTCTGGTACCAGCCGTACAGCGGAGAAGATTTGTATTAA

Protein

MGNRDIFNSRNSAFSPHRLRDWEMGFQKPIGADDAMAKSLYCGMKPIASWESDNTRTPPTGGVFNLEFSPDGSLLVAACEKKSLQIFDPLTHQRTHCVTEAHSDCVNCVKFLDARMFATCSDDTTVALWDVRNMKKKIRSLLGHLRWVKSIEFSVKDKLLVTSGLDGSIYTWDINSYTECNLVYQRVFHTSSLMRCRLSPDARKMVLCTTGGLIIIIHDLNLSTLAQDLHGFKPNLYKLMQMSKQLIPIAAMYDHLFDSTRKENRIEFVSDFPDGNDAEVISALQIHPQGWSALSRNLSHEDRSEWTCIHDIQPEDACPTKPTRDTSAPPPRRNMRRFRLHLRLRPSRTETAAAPSEADPEPEPGPSGAAASATSRLSPQGLSSIQNDLWEASITVKQNRMLQDIYSRGQVRRNFNMQRITGINTGITPPSTLRARHPRDSTFTTPSTSGHYPREVIIDKCVSSKPFIRQNKDRLLYYIEETNEGRGFIKELCYSADGRIVCSPFGCGMRLLALNQQCSELPHLVQDSSGPRVMTEVGQSLGIHQDLVVSSRFSPRYHMLVTGCLDGKIVWYQPYSGEDLY

Uniprot

W8C0X6 B4H3N4 D6QY86 D6QY84 D6QY78 B4HD14 + More
D6QY82 B5DKP3 D6QY80 B4HD12

Pubmed

24495485 17994087 20351054 15632085

EMBL

GAMC01011246 JAB95309.1 CH479207 EDW30985.1 HM017533 ADG64906.1 + More
HM017531 ADG64904.1 HM017525 HM017526 HM017528 HM017530 HM017534 HM017535 ADG64898.1 ADG64899.1 ADG64901.1 ADG64903.1 ADG64907.1 ADG64908.1 CH479595 EDW34941.1 HM017529 ADG64902.1 CH379063 EDY72093.2 HM017527 HM017532 HM017536 ADG64900.1 ADG64905.1 ADG64909.1 EDW34939.1

Proteomes

UP000008744 UP000001819

Pfam

PF00400 WD40

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS
IPR001680   WD40_repeat
IPR017986   WD40_repeat_dom
IPR039085   DCA10
IPR015943   WD40/YVTN_repeat-like_dom_sf

SUPFAM

SSF50978 SSF50978

Gene 3D

2.130.10.10

ProteinModelPortal

W8C0X6 B4H3N4 D6QY86 D6QY84 D6QY78 B4HD14 + More
D6QY82 B5DKP3 D6QY80 B4HD12

PDB

3SHF E-value=1.12931e-11, Score=170

KEGG

101742381 K11802 WD repeat-containing protein 32 | (RefSeq) DDB1- and CUL4-associated factor 10 homolog

GO

GO:0005515 GO:0005524 GO:0003682 GO:0003677 GO:0003700 GO:0006355 GO:0008270 GO:0043565 GO:0005112 GO:0015930

PANTHER

PTHR14588

Length:

581

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.42738

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02162

outside

1 - 581

Pi

258.24602

Theta

162.28405

Tajima's D

1.438179

CLR

0.554415

CSRT

0.775211239438028

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics