Silkworm Genome Informatics Database

Gene

KWMTBOMO15057

Pre Gene Modal

BGIBMGA004818

Annotation

Protein_distal_antenna_[Danaus_plexippus]

Location

Bomo_Chr25(+):3750233-3754227 View in EpiBrowser

Full name

Protein distal antenna

Location in the cell

Nuclear Reliability : 3.726

CDS

ATGGCAACAAAGGGTAAGCGACCTATGCGCGCTCTGACGCCCGGCGACAAAATCGAGGCCATACAACGGGTCAACGACGGAGAGTCCAAGGCATCGGTCGCACGAGACATAGGCGTGCCAGAGTCCACTCTGCGCGGCTGGTGCAAGAACGAGGACAAACTGCGCTACATGACGTCACGATTATCGTCACCCGACACGGACAAGAGCAATGACGGCGAGCCTCTAGAGAAACGTGCACGCACCGTGTCCCCGGCCGCGCCCTCACCCCCCGCGCCCTCCGGCCTCGACCTGACCGCCGCGTCTATACCCACCTCCACCGCCACACAACTACCGCCGGCACCGGCCGACGCTCCCGTGGAACTCACAACCAAACGCAGCGAACCATCACCCATCCCGCATGTACCTCGCGAGCGCAGACCGGACCCCGGGGCCAGTGTTTCTATGAGCGCCATCAGCCCGCTCTCCGGCCTCGGTCACATCCCTGGCCTCTCGCATTCACATCTCGGACTCAGTTTTAACGAAATAGCGACCAATCTCACGCTCTTGGCGCAACTCAACCCGGGCCTGTCGGCCTTGTCCGCCCAGCCATCTAGTCTTTTGCGGTCGGTGCGATCTCCGAAACCAGCACACAACGGTGGACTCAACTTGAGTGACACCAAACATCGCAAGTCACATCACTCCGATCCTTATCGTCACTCAGGGTCAAAGTCGAGCCATCATCACGGATCATTACCATCGGCGGCCACTCAGCCCGTGGACGACACTCTTTGGTATTGGCTAAAAACTCAACAGGCGATGCTGGACCTAACCGCGCAAACGACGGCCGCTCATCCACTACAACTGAGCAAATCCTCCGAGTCAAGCATGCCATCTAAACCAGTGGCCCCAGCCGCCCCGGTCAATCCACACCTCGACTACAACCGAAACTCGTGGCTGTGGCAATACTATAAACAGTTCGGTGGCGCTATGCCGCTACCCGAAGACAAACACAAGCCAGCATCTCAGGTACCAAAGGAAAAGACCGCGGAGAACATTCTCTACTCGCAACTCACTAAAGGAAAGCCGGAGAAGGGAACAGCGATAAGTCCCGACAGACCACAGCTACGCGAAGAGGACACACGCGATACGCCAAATGAAGGCATTCGCGTCGCCACTCCCGTCGCCAGCCCCGAAATAGGTTCAGAAAACAAGGAACCCATGACCGAACGCAGTCTCGATGCTCCGAGAAACCAAACGAAAGCCAGAACCGTCTTAGATAGTCTATTATTCAACAATTCGGGCGCAACCACGAACAAGGACTCGGCAGCGGAGAATCAACCGAACGAAGAGTGGGAGACGGGGGCCGCAGAGGCTCTAGAGCACGGCGACAAGTTCCTGTCGTGGCTGGAGTCGAGCGGCGACCCGAGCGTGACGCGCATGCACGTGCACCAGCTGCGGGCCCTGCTGCACAACCTGCGGGCGCGCCGGGCCCCCTCCGCCGAGCACGCGCGCCGCAAGTAA

Protein

MATKGKRPMRALTPGDKIEAIQRVNDGESKASVARDIGVPESTLRGWCKNEDKLRYMTSRLSSPDTDKSNDGEPLEKRARTVSPAAPSPPAPSGLDLTAASIPTSTATQLPPAPADAPVELTTKRSEPSPIPHVPRERRPDPGASVSMSAISPLSGLGHIPGLSHSHLGLSFNEIATNLTLLAQLNPGLSALSAQPSSLLRSVRSPKPAHNGGLNLSDTKHRKSHHSDPYRHSGSKSSHHHGSLPSAATQPVDDTLWYWLKTQQAMLDLTAQTTAAHPLQLSKSSESSMPSKPVAPAAPVNPHLDYNRNSWLWQYYKQFGGAMPLPEDKHKPASQVPKEKTAENILYSQLTKGKPEKGTAISPDRPQLREEDTRDTPNEGIRVATPVASPEIGSENKEPMTERSLDAPRNQTKARTVLDSLLFNNSGATTNKDSAAENQPNEEWETGAAEALEHGDKFLSWLESSGDPSVTRMHVHQLRALLHNLRARRAPSAEHARRK

Description

Probable transcription factor with a role in the retinal determination (RD) network. Contributes to differentiation of antenna-specific characteristics (By similarity).

Subunit

Homomers. Interacts with itself, danr, ey and dac to form a complex (or complexes) containing the RD factors (By similarity).

Keywords

Complete proteome Developmental protein DNA-binding Nucleus Phosphoprotein Reference proteome Transcription Transcription regulation

Feature

chain Protein distal antenna

Uniprot

H9J5M8 A0A2A4JPR7 A0A3S2LHG6 A0A2W1C167 A0A212FCH7 A0A2H1WXG2 + More
S4PCM8 A0A194PHJ5 A0A0N0PCF1 A0A1J1HLM2 A0A336LYE8 A0A1I8PEH4 T1GK19 A0A1W4XJ17 B4IJH6 A0A1I8MBM3 B3P6Q6 A0A182G598 Q16IB4

Pubmed

19121390 28756777 22118469 23622113 26354079 17994087 + More
25315136 26483478 17510324

EMBL

BABH01025037 NWSH01000949 PCG73400.1 RSAL01000008 RVE53934.1 KZ149918 + More
PZC77833.1 AGBW02009188 OWR51446.1 ODYU01011801 SOQ57753.1 GAIX01004101 JAA88459.1 KQ459604 KPI92189.1 KQ460594 KPJ13934.1 CVRI01000010 CRK88933.1 UFQT01000312 SSX23106.1 CAQQ02126890 CAQQ02126891 CH480848 EDW51167.1 CH954182 EDV53726.1 JXUM01043072 KQ561349 KXJ78867.1 CH478090 EAT34003.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000053268 UP000053240 + More
UP000183832 UP000095300 UP000015102 UP000192223 UP000001292 UP000095301 UP000008711 UP000069940 UP000249989 UP000008820

PRIDE

H9J5M8

Pfam

PF04218 CENP-B_N

Interpro

IPR009057   Homeobox-like_sf        + More
IPR007889   HTH_Psq
IPR036388   WH-like_DNA-bd_sf

SUPFAM

SSF46689 SSF46689

Gene 3D

1.10.10.10

ProteinModelPortal

H9J5M8 A0A2A4JPR7 A0A3S2LHG6 A0A2W1C167 A0A212FCH7 A0A2H1WXG2 + More
S4PCM8 A0A194PHJ5 A0A0N0PCF1 A0A1J1HLM2 A0A336LYE8 A0A1I8PEH4 T1GK19 A0A1W4XJ17 B4IJH6 A0A1I8MBM3 B3P6Q6 A0A182G598 Q16IB4

PDB

2ELH E-value=5.98316e-22, Score=258

KEGG

101743302 K22536 distal antenna | (RefSeq) protein distal antenna-like

GO

GO:0005634 GO:0003677 GO:0007469 GO:0007379 GO:0003700 GO:0048749 GO:0006355 GO:0008270 GO:0006164 GO:0004180 GO:0005515 GO:0003676 GO:0007154 GO:0016020 GO:0005112 GO:0015930

Subcellular location

Nucleus

Length:

499

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02548

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01936

outside

1 - 499

Pi

266.090909

Theta

201.860406

Tajima's D

1.239405

CLR

0

CSRT

0.729363531823409

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics