SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15055
Pre Gene Modal
BGIBMGA004815
Annotation
PREDICTED:_putative_FERM_domain-containing_protein_FRMD8P1_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr25(+):3551848-3563122      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.787
 

Sequence

CDS
ATGGAACATCAATCAGAAATGGGTGTTTACGGCGATACTCCTAACGTGCAAAACAGTGGAAACTATATTACAATAATACCTGTGGACTATACACGTAGAGGATATCAGATGCAAGCAGAATATCAATATAACGAGTTTCGATCCCGCGAAGAATATTACAGCGTTCAAAGTCAAAAGTTACAGGCCGAGGTTAACGCGCATTTGTATTCAGTTTCGCAAAGGTTGCCCCACCTCTCGTACAGTCCGCTGGGGCGGCATAATGAGTGGGACAAACACGATCCCCACAAGCCCCTCCAGTCCGAATCGAAGGAGAGCAACAGCTCCGACTCCCTCGAAAAAAGCGTCATGGGATCCAATCTGAGTAGCTGTTCTAATCAAACCGGATCCAGCAGTATAGCAGCCGGCTCCTTCAGCACAACAGAACCTATTACCAGTGGAGGGAGTTCGTCTAGTGCTATATCCCCACCATTACCAGGATCCTCGGGTAGCACAGCCTCTTCATCGACGGTAACATCGAACCCCGTCACTTGCATCTACCTCATGTCTCGTACCGCGATCATGATGGAGATGAGCTCGGAAGAAGTACCGGCCAATGTGACAACAGCACGATTCCTTAATGCGGTTCTGGCCACTGAAGAGTTAGGGTTGTCGCAGCCTTCGACCAGAAGCGTGGCGGCTAACGTTTTTGCGTTGTGGATGTGCAGTCCACTGTTGGAAATCCAATTGAAGCCTCATCACAGTCCATGGAAAATCTGGGCAAACTGGCAGAAACTACTGTTGCGTTACGGACATGGGTCAGAATCGAAGCGACGTCGAGATCAGCCAGTCTTGAGATTACAGAGAAACGTTTTCTTTCCCAAACACATCGAAGAAGGAATCAAAGATTCCCGTATACAAGAATTGTTATATGAAGAAGCACGTCACAACGTGGTCACAGGGAGGTATCCTTTAGAGAGTGCTCAAGCTGTTATGCTTGGAGGGCTGCAAGCTAGGATACAACTTGGCCCCTACGATCCGCACCGACATACAGCTAAATTTTTTAGGGAGCATCAAGACAAATATTTGCCGAAACATGCGCGTTCAGGGCGTTGGGCCCAACTACTGCCAGCCGGCAGGAAGGGCAGCCCCGAAGCCAAACTATTAGAACAAGCGCAGAGACCTCCTGCCGCTCCACCGAGGAAGCTACGACATAAATACTTGGCTCACACCAGAACTCTCCCTACTTATGGGGCCGCCTTCTTCCAAGGGCAAATCGAACAGCCAGTCCGGAGTTTGACCAGTCTATTGACTCACGAAGATATTCCGGTCTTGGTGGCCGTCAACTCCAATGGGGTTTACGTGATCGATGACACTGAAAGCACAGTTCTACTTGGTTTGCTGTATGAAGAGCTGTCATGGGACATCGGCCTACCTTCCGAGGAGCACGAAGAGAGTCTACCGTGTCTATTCTTGCAGTTCATGGTTGTCGAAAACGGTTTAAGAGTCTCCAAAATATTGCAGGTATTCTCGAGACAAGCTAGCATGATGGATACGTTGATAGAGCACTTCGCTGGGGAATACAGAAAGAGGCTTGGACAGGAGACGCCAAGTGATCACGCCAATTACGACTACCATTCAGATTCCGGTAGTATATCCCTGCCTCCGTTATCAAGGCCAGATTCTCCCCAACGTAGATTGGCCAACAAGTTGTCTAGGTTGGCGTTGGCCACGCACGACGGACGCGGCAACCTGCTGGGCGGAGCTGGAGATTGGGGCGCGGACTTAGACCATCAACGGCCGTCTTGGATATTACCCAAACACTAA
Protein
MEHQSEMGVYGDTPNVQNSGNYITIIPVDYTRRGYQMQAEYQYNEFRSREEYYSVQSQKLQAEVNAHLYSVSQRLPHLSYSPLGRHNEWDKHDPHKPLQSESKESNSSDSLEKSVMGSNLSSCSNQTGSSSIAAGSFSTTEPITSGGSSSSAISPPLPGSSGSTASSSTVTSNPVTCIYLMSRTAIMMEMSSEEVPANVTTARFLNAVLATEELGLSQPSTRSVAANVFALWMCSPLLEIQLKPHHSPWKIWANWQKLLLRYGHGSESKRRRDQPVLRLQRNVFFPKHIEEGIKDSRIQELLYEEARHNVVTGRYPLESAQAVMLGGLQARIQLGPYDPHRHTAKFFREHQDKYLPKHARSGRWAQLLPAGRKGSPEAKLLEQAQRPPAAPPRKLRHKYLAHTRTLPTYGAAFFQGQIEQPVRSLTSLLTHEDIPVLVAVNSNGVYVIDDTESTVLLGLLYEELSWDIGLPSEEHEESLPCLFLQFMVVENGLRVSKILQVFSRQASMMDTLIEHFAGEYRKRLGQETPSDHANYDYHSDSGSISLPPLSRPDSPQRRLANKLSRLALATHDGRGNLLGGAGDWGADLDHQRPSWILPKH

Summary

Uniprot
A0A2A4JW77   A0A2H1WDY8   A0A212ETC6   A0A194PFN1   H9J5M5   A0A2A4JXC4   + More
A0A1E1WT03   A0A1Y1L1R5   A0A1B0BB54   A0A182VZX2  
Pubmed
22118469    26354079    19121390    28004739   
EMBL
NWSH01000485    PCG76069.1    ODYU01008031    SOQ51295.1    AGBW02012595    OWR44752.1    + More
KQ459604    KPI92186.1    BABH01025054    PCG76070.1    GDQN01000962    JAT90092.1    GEZM01068897    JAV66711.1    JXJN01011304   
Proteomes
UP000218220    UP000007151    UP000053268    UP000005204    UP000092460    UP000075920    + More
PRIDE
H9J5M5   
Pfam
PF00373   FERM_M
Interpro
IPR035963   FERM_2        + More
IPR014352   FERM/acyl-CoA-bd_prot_sf       
IPR011993   PH-like_dom_sf       
IPR019749   Band_41_domain       
IPR000299   FERM_domain       
IPR019748   FERM_central       
SUPFAM
SSF47031   SSF47031       
Gene 3D
1.20.80.10     2.30.29.30    
CDD
cd14473  FERM_B-lobe
ProteinModelPortal
A0A2A4JW77   A0A2H1WDY8   A0A212ETC6   A0A194PFN1   H9J5M5   A0A2A4JXC4   + More
A0A1E1WT03   A0A1Y1L1R5   A0A1B0BB54   A0A182VZX2  
PDB
4HDQ     E-value=6.01321e-21,     Score=250

Ontologies

KEGG
101739157    no KO assigned | (RefSeq) putative FERM domain-containing protein FRMD8P1
GO
GO:0005856   GO:0003676   GO:0006164   GO:0004180   GO:0005515   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

Topology

Length:
600
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00183
Exp number, first 60 AAs:
0.00035
Total prob of N-in:
0.00069
outside
1  -  600
 
 

Population Genetic Test Statistics

Pi
206.362173
Theta
153.487455
Tajima's D
0.748294
CLR
0.707504
CSRT
0.588120593970301
Interpretation
Uncertain
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