Gene

KWMTBOMO15048

Pre Gene Modal

BGIBMGA004811

Annotation

PREDICTED:_SAGA-associated_factor_11_homolog_[Papilio_machaon]

Location

Bomo_Chr25(+):3470278-3474098      View in EpiBrowser

Full name

SAGA-associated factor 11 homolog       + More
Ataxin-7-like protein 3      

Alternative Name

SAGA-associated factor 11 homolog

Location in the cell

Nuclear   Reliability : 4.326

CDS

ATGAATACAATATCCAGCGAGCTCAGTATGAACGATTTAAACAGTAAATTCTTTGAAATAATGCAAAATGAAGACAACGCCGTCGAAGCGACAAATTTTATATACGATCAATTGTTTGACGACGTAACCTTGGGCATCTTGTTTGAATTCCATCATGGGGTGAAGACCGGCCTTACAGATCTGATAGAAGGGGAGAAAGAAGAAGAAGAGCCCTATAAAATAGTAAATACATCCGAGTGTGACGTATTCGGATTTTCAATGATGAAAAAGACCCCAGATTCAAACTGCTCGTGTCCAAATTGTGAGCGACCGGTGTCGGCAACGAGGTTCGCGCCTCACTTAGAGAAATGTATGGGAATGGGTAGAAACAGTTCTCGTATCGCATCCCGCCGGATTGCCTCAAACAGTCGTGAACCTACCTCTTATGCTGGACTACTAAGTGATGATGATGATGATGCTGACTGGGCCGGGGGCTCAATGCAAAATGAACGCCGGAAACGACGAATTAAAAACAACAATAACAGGAAACCAAATAAAATGCACAATGGTAACAGCAGAAATGGTCACCTGAACAATGATGCTAATGATGGCAGTACTACCTATGAAACAATGACTGCCAATGAGAAGAAAAATCTATTATTACACAGCTGTGGTGTTGTTTCTGAACACACTAAGAAGTTTTGCACCAGGTCGACTCGGTGTCCCCAGCACACTGAAGAGCAACGCCGGGCCGTACGTATCAGTGTATTAGAGCCCTCAACTCCAGAGTCTCAAATGATGGGTCTAACCCCTGACGAGGCCAGCTCTCCGCCCGATTCCAGTCCATCTTCGTCTTGTTCATCGTCGAGTCGCAAGCGCGATCGCCACCGAGCCCCACCAAAGATGAAAAACAAACGGGAAAGGAACATCTCGCCGAGCCAAAGAGAATAG

Protein

MNTISSELSMNDLNSKFFEIMQNEDNAVEATNFIYDQLFDDVTLGILFEFHHGVKTGLTDLIEGEKEEEEPYKIVNTSECDVFGFSMMKKTPDSNCSCPNCERPVSATRFAPHLEKCMGMGRNSSRIASRRIASNSREPTSYAGLLSDDDDDADWAGGSMQNERRKRRIKNNNNRKPNKMHNGNSRNGHLNNDANDGSTTYETMTANEKKNLLLHSCGVVSEHTKKFCTRSTRCPQHTEEQRRAVRISVLEPSTPESQMMGLTPDEASSPPDSSPSSSCSSSSRKRDRHRAPPKMKNKRERNISPSQRE

Description

Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.

Subunit

Component of some SAGA transcription coactivator-HAT complexes. Within the SAGA complex, participates to a subcomplex of SAGA called the DUB module (deubiquitination module).

Similarity

Belongs to the SGF11 family.

Uniprot

H9J5M1   A0A2A4JGS5   A0A194PFW2   A0A0N0PCH0   A0A2W1BW01   A0A212ETD3   + More
A0A2H1W6X3   A0A1E1WIG2   A0A2P8XKG8   A0A2J7Q2C0   A0A067QF62   A0A310SHJ6   A0A2A3E8Y4   A0A088A357   A0A0L7QXD8   A0A0C9R0X1   A0A154P374   K7J7P2   A0A3Q2XEE3   A0A1A7X9H5   A0A3Q3JDJ2   A0A1A8AIU0   A0A1A8C0J1   E2AV87  

Pubmed

19121390    26354079    28756777    22118469    29403074    24845553    + More
20075255    20798317   

EMBL

BABH01025063    BABH01025064    NWSH01001636    PCG70620.1    KQ459604    KPI92182.1    + More
KQ460594    KPJ13941.1    KZ149918    PZC77825.1    AGBW02012595    OWR44748.1    ODYU01006731    SOQ48839.1    GDQN01004403    JAT86651.1    PYGN01001856    PSN32500.1    NEVH01019373    PNF22724.1    KK853628    KDR03827.1    KQ761039    OAD58340.1    KZ288322    PBC28170.1    KQ414704    KOC63283.1    GBYB01001640    JAG71407.1    KQ434809    KZC06389.1    AAZX01015390    HADW01013140    HADX01016140    SBP14540.1    HADY01016113    SBP54598.1    HADZ01009128    SBP73069.1    GL443059    EFN62641.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000245037    + More
UP000235965    UP000027135    UP000242457    UP000005203    UP000053825    UP000076502    UP000002358    UP000264820    UP000261600    UP000000311   

PRIDE

H9J5M1   

Pfam

PF08313   SCA7        + More
PF08209   Sgf11

Interpro

IPR013246   SAGA_su_Sgf11        + More
IPR013243   SCA7_dom       

ProteinModelPortal

H9J5M1   A0A2A4JGS5   A0A194PFW2   A0A0N0PCH0   A0A2W1BW01   A0A212ETD3   + More
A0A2H1W6X3   A0A1E1WIG2   A0A2P8XKG8   A0A2J7Q2C0   A0A067QF62   A0A310SHJ6   A0A2A3E8Y4   A0A088A357   A0A0L7QXD8   A0A0C9R0X1   A0A154P374   K7J7P2   A0A3Q2XEE3   A0A1A7X9H5   A0A3Q3JDJ2   A0A1A8AIU0   A0A1A8C0J1   E2AV87  

PDB

2KKT     E-value=1.36928e-11,     Score=167

KEGG

101743816    K11363 SAGA-associated factor 11 | (RefSeq) SAGA-associated factor 11 homolog

GO

GO:0016578   GO:0045893   GO:0000124   GO:0071819   GO:0003713   GO:0008270  

Subcellular location

Nucleus  

Length:

309

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00021

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.01666

outside

1  -  309

 

 

Pi

300.192334

Theta

202.134165

Tajima's D

1.529146

CLR

0

CSRT

0.795810209489526

Interpretation

Uncertain