Gene

KWMTBOMO15047  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004859

Annotation

PREDICTED:_N-acetylneuraminate_lyase-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(-):3450399-3465707      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.366

CDS

ATGATTGACTTTGAAACACGTGGTTTGATGCCCCCGGTCTTCACGCCGCTGAACGATGATCTCACAATCAACTATGCGGCTATACCTGGATATGCCAAATACATGGCGGAAGCTGGCTTCAAATGTGTACTCGTTGGTGGTACGACAGGCGAGCATATGTCTCTAAACGTAGCGGACAGGAAGAAAGTTATCGAAGAATGGGTGAAAGCGGGAAGGAGCACTGGTCTTCACATACAGGTACAAGTCGGTGGTGCACCACTCCCCGACGTGCAGGAATTGGCGGCGTTCTGTCAAAAAAATGGCGTTGGTTCGATTCTAACGCTACCGGAACTATACTTCAAACCGAGCAATGTCGATGAACTGGTGTCTTACGTTGCCCTGGTAGCCGGCGCGGCACCGAAATTGCCTGTGCTATATTACCACATTCCCAGCATGACTCGGGTTGAGATTAACATGCCTGCCTTCGTCACGGAGGCCTCAAAGAAAATACCCAATTTCGCAGGCATCAAGTTCACTTCGAACGATTTGAGCGAAGCGTCTCAAGTGCTTCGTGCCATGTCCGAGAAGAAGGCACTATTCCTTGGAGCGGACACGCTTTTAGCACCGGCGGCCCTGCTCGGCATAAAATCGAGCATCGGGACGTCTTTCAATCTCTTCCCGAAAATAGCTCACGCTATCCTGAGCGCTGTTCAGAATAAGGACGTGGAGACGGCGAGAGCCCTCCAGCACAAGCTGTGTCTGGCGATCGAATCATTGACCAAGGAAGGTCCGTGGGTGCCCGTTATGAAGGCCGGAATGGAAATCGTGACCGGAATCAGAGTTGGGCCGCCTTCGCTGCCTCAAAAGCCGCTTAGTTCGGAAGCCATAGAGCGGATTCGTGGCAGGCTCAGGGTGCTGGATGTAGCCTAG

Protein

MIDFETRGLMPPVFTPLNDDLTINYAAIPGYAKYMAEAGFKCVLVGGTTGEHMSLNVADRKKVIEEWVKAGRSTGLHIQVQVGGAPLPDVQELAAFCQKNGVGSILTLPELYFKPSNVDELVSYVALVAGAAPKLPVLYYHIPSMTRVEINMPAFVTEASKKIPNFAGIKFTSNDLSEASQVLRAMSEKKALFLGADTLLAPAALLGIKSSIGTSFNLFPKIAHAILSAVQNKDVETARALQHKLCLAIESLTKEGPWVPVMKAGMEIVTGIRVGPPSLPQKPLSSEAIERIRGRLRVLDVA

Similarity

Belongs to the DapA family.

Uniprot

H9J5R9   A0A2A4JFY8   I4DPJ4   A0A2A4JFM5   A0A194PFM7   A0A0N0PCS5   + More
A0A3S2NC89   A0A212ETD9   A0A0L7L8A9   J3JYH0   F4X1Y9   D6WME9   E2BFR7   A0A195FJA2   A0A158P438   A0A151IUE1   A0A2A4JEY1   A0A151WF36   E9IK31   N6UI15   A0A0C9RWH4   K7J245   A0A2J7QQ19   A0A023F7H9   A0A067RJQ4   A0A2J7QPZ4   R4FL94   A0A0A9Z1Y6   A0A0K8SKB8   A0A1Y1KGM9   A0A151JBW8   A0A1Y1KH54   A0A232FEM4   A0A151WF58   K7IMV4   A0A158P437   A0A087ZVV2   A0A1B6DZ58   E2AJ86   F4X1Z0   A0A2H1W3A5   A0A1Y1KKF9   A0A195FJP7   A0A224XHH7   A0A1B6LID4   A0A1B6IYA4   A0A0C9QMI7   A0A1L8DCV7   A0A0N0BGL6   H9J5M0   A0A1Y1KN37   A0A026WBS3   A0A2A3EF84   A0A3S2L1T7   A0A336M102   A0A1B6I5W9   E0VUC4   A0A2J7QQ05   A0A0T6ATU1   A0A1Y1KBI2   A0A1W4X969   A0A1W4X7X0   A0A0P4VHC9   Q16WA2   A0A1S4FMA1   A0A182GZ29   A0A195CNB7   A0A182QP80   R4WNH6   A0A154PSC7   A0A182T0U9   A0A1B0CHZ1   A0A310SPK1   A0A182NHC9   A0A084VF66   A0A2W1BRW0   A0A1L8DBH0   A0A182M3E0   A0A1Q3FDN6   A0A182JMC6   B0VZR3   A0A232EGK8   A0A336M1U9   A0A182WIY3   A0A1B0D3L4   A0A1B6CQ74   A0A182PA02   T1HX93   A0A182FG30   A0A0L7RKK5   A0A182X6K7   A0A182KS08   T1DNX9   Q7PTG5   A0A1Y1LHN7   W5JKQ9  

Pubmed

19121390    22651552    26354079    22118469    26227816    22516182    + More
21719571    18362917    19820115    20798317    21347285    21282665    23537049    20075255    25474469    24845553    25401762    26823975    28004739    28648823    24508170    20566863    27129103    17510324    26483478    23691247    24438588    28756777    20966253    12364791    14747013    17210077    20920257    23761445   

EMBL

BABH01025065    BABH01025066    NWSH01001636    PCG70618.1    AK403635    BAM19834.1    + More
PCG70619.1    KQ459604    KPI92181.1    KQ460594    KPJ13942.1    RSAL01000235    RVE43727.1    AGBW02012595    OWR44747.1    JTDY01002387    KOB71521.1    BT128298    AEE63256.1    GL888558    EGI59525.1    KQ971343    EFA04261.2    GL448039    EFN85455.1    KQ981523    KYN40483.1    ADTU01008424    KQ980964    KYN11012.1    PCG70617.1    KQ983227    KYQ46426.1    GL763924    EFZ18997.1    APGK01035366    APGK01035367    KB740923    ENN78297.1    GBYB01013345    JAG83112.1    NEVH01012087    PNF30663.1    GBBI01001520    JAC17192.1    KK852639    KDR19640.1    PNF30658.1    GAHY01001523    JAA75987.1    GBHO01005141    GBHO01005140    GDHC01021560    JAG38463.1    JAG38464.1    JAP97068.1    GBRD01012074    GBRD01012073    GDHC01015486    JAG53751.1    JAQ03143.1    GEZM01087347    JAV58745.1    KQ979110    KYN22602.1    GEZM01087346    JAV58746.1    NNAY01000352    OXU28970.1    KYQ46425.1    GEDC01006332    GEDC01003561    JAS30966.1    JAS33737.1    GL439967    EFN66526.1    EGI59526.1    ODYU01006029    SOQ47513.1    GEZM01081089    JAV61892.1    KYN40482.1    GFTR01004480    JAW11946.1    GEBQ01016525    JAT23452.1    GECU01015785    JAS91921.1    GBYB01004719    JAG74486.1    GFDF01009887    JAV04197.1    KQ435775    KOX74992.1    GEZM01081090    JAV61891.1    KK107293    EZA53418.1    KZ288262    PBC30397.1    RVE43726.1    UFQT01000393    SSX23925.1    GECU01025380    JAS82326.1    DS235785    EEB16980.1    PNF30659.1    LJIG01022832    KRT78489.1    GEZM01087348    JAV58744.1    GDKW01002751    JAI53844.1    CH477572    EAT38848.1    JXUM01098550    KQ564429    KXJ72292.1    KQ977513    KYN02246.1    AXCN02000896    AK417186    BAN20401.1    KQ435100    KZC14657.1    AJWK01012915    AJWK01012916    KQ760538    OAD59997.1    ATLV01012362    KE524785    KFB36610.1    KZ149918    PZC77822.1    GFDF01010410    JAV03674.1    AXCM01001459    GFDL01009354    JAV25691.1    DS231815    EDS35155.1    NNAY01004742    OXU17487.1    UFQT01000285    SSX22803.1    AJVK01002966    AJVK01002967    GEDC01028887    GEDC01021641    JAS08411.1    JAS15657.1    ACPB03006242    KQ414570    KOC71349.1    GAMD01002465    JAA99125.1    AAAB01008807    EAA03961.4    GEZM01055082    JAV73162.1    ADMH02001258    ETN63359.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    + More
UP000037510    UP000007755    UP000007266    UP000008237    UP000078541    UP000005205    UP000078492    UP000075809    UP000019118    UP000002358    UP000235965    UP000027135    UP000215335    UP000005203    UP000000311    UP000053105    UP000053097    UP000242457    UP000009046    UP000192223    UP000008820    UP000069940    UP000249989    UP000078542    UP000075886    UP000076502    UP000075901    UP000092461    UP000075884    UP000030765    UP000075883    UP000075880    UP000002320    UP000075920    UP000092462    UP000075885    UP000015103    UP000069272    UP000053825    UP000076407    UP000075882    UP000007062    UP000000673   

PRIDE

H9J5R9    A0A087ZVV2    H9J5M0   

Pfam

PF00701   DHDPS        + More
PF03101   FAR1
PF09774   Cid2

Interpro

IPR013785   Aldolase_TIM        + More
IPR002220   DapA-like       
IPR020624   Schiff_base-form_aldolases_CS       
IPR020625   Schiff_base-form_aldolases_AS       
IPR004330   FAR1_DNA_bnd_dom       
IPR019171   Caffeine_induced_death_Cid2       

Gene 3D

3.20.20.70    

ProteinModelPortal

H9J5R9   A0A2A4JFY8   I4DPJ4   A0A2A4JFM5   A0A194PFM7   A0A0N0PCS5   + More
A0A3S2NC89   A0A212ETD9   A0A0L7L8A9   J3JYH0   F4X1Y9   D6WME9   E2BFR7   A0A195FJA2   A0A158P438   A0A151IUE1   A0A2A4JEY1   A0A151WF36   E9IK31   N6UI15   A0A0C9RWH4   K7J245   A0A2J7QQ19   A0A023F7H9   A0A067RJQ4   A0A2J7QPZ4   R4FL94   A0A0A9Z1Y6   A0A0K8SKB8   A0A1Y1KGM9   A0A151JBW8   A0A1Y1KH54   A0A232FEM4   A0A151WF58   K7IMV4   A0A158P437   A0A087ZVV2   A0A1B6DZ58   E2AJ86   F4X1Z0   A0A2H1W3A5   A0A1Y1KKF9   A0A195FJP7   A0A224XHH7   A0A1B6LID4   A0A1B6IYA4   A0A0C9QMI7   A0A1L8DCV7   A0A0N0BGL6   H9J5M0   A0A1Y1KN37   A0A026WBS3   A0A2A3EF84   A0A3S2L1T7   A0A336M102   A0A1B6I5W9   E0VUC4   A0A2J7QQ05   A0A0T6ATU1   A0A1Y1KBI2   A0A1W4X969   A0A1W4X7X0   A0A0P4VHC9   Q16WA2   A0A1S4FMA1   A0A182GZ29   A0A195CNB7   A0A182QP80   R4WNH6   A0A154PSC7   A0A182T0U9   A0A1B0CHZ1   A0A310SPK1   A0A182NHC9   A0A084VF66   A0A2W1BRW0   A0A1L8DBH0   A0A182M3E0   A0A1Q3FDN6   A0A182JMC6   B0VZR3   A0A232EGK8   A0A336M1U9   A0A182WIY3   A0A1B0D3L4   A0A1B6CQ74   A0A182PA02   T1HX93   A0A182FG30   A0A0L7RKK5   A0A182X6K7   A0A182KS08   T1DNX9   Q7PTG5   A0A1Y1LHN7   W5JKQ9  

PDB

6ARH     E-value=4.35259e-44,     Score=447

KEGG

101743965    K01639 N-acetylneuraminate lyase [EC:4.1.3.3] | (RefSeq) N-acetylneuraminate lyase-like

PATHWAY

00520    Amino sugar and nucleotide sugar metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016829   GO:0008152   GO:0003824   GO:0004180   GO:0005515   GO:0003676   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

PANTHER

PTHR12128  

Length:

302

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.81136

Exp number, first 60 AAs:

0.01658

Total prob of N-in:

0.04602

outside

1  -  302

 

 

Pi

253.523726

Theta

17.103109

Tajima's D

0.738558

CLR

0.630679

CSRT

0.593920303984801

Interpretation

Uncertain