Gene

KWMTBOMO15044

Pre Gene Modal

BGIBMGA014523

Annotation

PREDICTED:_N-acetylneuraminate_lyase-like_[Bombyx_mori]

Location

Bomo_Chr25(+):3420298-3425740      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 0.972

CDS

ATGCTGCAAGTAGGAGGAGTACCATCACCTGACATAATTGAACTGGTCCGTTATGCAGTATCGAAAGACGCTGATGGCATCCTAGCGTTACCACCACCGTTTTACAGTCCAGAAACCCCTGAAGACTTCACCAGATATATAGAGTTTCTCACGTGCTGCTCTGGAGGTCTGCCTATATACTACGACAACGTGATTGCGAATCCAAATATAGCAGCTTTGTTCATTATGGCCCCATACTTCGAGAGGGCATCAAACGAAGTGGAAAATTTCAAAGGTATGAGGGGCAGCTTTAGAGACGCTATGCTCATCACGTCCGAGGCAGAGATCAGAAGTGACCAGGAGTTTTTCTTGAACAAACATCTGGCGGTCGCCGGGGCCATGTACATGGGCTTCAACTCTTATATTACCCCAATATTAAACTTCTTGCCGGAACTCATTCGTGAGATCAGGAACTACAGCAATAGCGGTGACAGTGATGCTGCCTCAGAGACACAGGACAGGCTAAATCACATCACTAGTCTCGTTATGGAGCAAGGAGACTCCATCGCGGCGTTGAAGGCCGCCACAGAATTAACGTCCGGTATTAGCTTGGGCGGTATGAGAGCTCCGCATCCGGCACTCTCAAACAGGGACATCACGGAGATCAAGGAAATCCTTAATGACAACGACATTGAATATATTGAACAATAA

Protein

MLQVGGVPSPDIIELVRYAVSKDADGILALPPPFYSPETPEDFTRYIEFLTCCSGGLPIYYDNVIANPNIAALFIMAPYFERASNEVENFKGMRGSFRDAMLITSEAEIRSDQEFFLNKHLAVAGAMYMGFNSYITPILNFLPELIREIRNYSNSGDSDAASETQDRLNHITSLVMEQGDSIAALKAATELTSGISLGGMRAPHPALSNRDITEIKEILNDNDIEYIEQ

Similarity

Belongs to the DapA family.
Belongs to the glycosyl hydrolase 13 family.

Uniprot

H9JYA3   H9JYA2   A0A1S4FMA1   Q16WA2   A0A2W1BRW0   A0A2H1W3A5   + More
H9J5M0   A0A182GZ29   A0A182T0U9   B0VZR3   A0A2A4JEY1   A0A182WIY3   T1DNX9   A0A195FJP7   A0A151JBW8   A0A1Q3FDN6   A0A182M3E0   A0A182RB21   A0A151WF58   E9IK31   A0A158P437   A0A195FJA2   A0A182NHC9   F4X1Z0   A0A151WF36   A0A0L7RKK5   A0A182QP80   A0A195CNB7   A0A3S2L1T7   A0A1Y1KKF9   A0A212ETD9   F4X1Y9   A0A154PSC7   A0A0N0BGL6   A0A1Y1LHN7   A0A1Y1KN37   A0A182FG30   A0A0C9RWH4   W5JKQ9   T1HX93   A0A182PA02   A0A151IUE1   I4DPJ4   A0A0P4VHC9   R4FL94   A0A158P438   E2BFR7   A0A084VF66   A0A194PFM7   A0A023F7H9   A0A182JMC6   A0A224XHH7   D6WP51   A0A182VFB3   A0A182X6K7   A0A182KS08   A0A182I3V6   A0A182JTV7   A0A182TEK1   Q7PTG5   A0A1Y1KBI2   A0A1Y1KGM9   A0A1Y1KH54   D6WME9   A0A3S2NC89   A0A087ZVV2   K7IMV4   A0A232FEM4   A0A026WBS3   A0A0N0PCS5   A0A2A3EF84   A0A1L8DCV7   A0A2A4JFM5   A0A2A4JFY8   A0A310SPK1   R4WNH6   A0A1W4X7X0   A0A1W4X969   A0A336KD48   A0A336M102   A0A1B0D3L4   E0VUC4   N6TWK1   E2AJ86   A0A0C9QMI7   A0A2R7WW08   A0A232EGK8   H9J5R9   A0A1J1HV81   A0A067RJQ4   A0A0T6ATU8   A0A2J7QQ05   A0A2J7QPZ4   A0A2J7QQ19   A0A336M1U9   A0A1B6CQ74   N6TUA9   A0A1B0CHZ1   A0A1B6DZ58  

Pubmed

19121390    17510324    28756777    26483478    21282665    21347285    + More
21719571    28004739    22118469    20920257    23761445    22651552    27129103    20798317    24438588    26354079    25474469    18362917    19820115    20966253    12364791    14747013    17210077    20075255    28648823    24508170    23691247    20566863    23537049    24845553   

EMBL

BABH01042768    CH477572    EAT38848.1    KZ149918    PZC77822.1    ODYU01006029    + More
SOQ47513.1    BABH01025066    JXUM01098550    KQ564429    KXJ72292.1    DS231815    EDS35155.1    NWSH01001636    PCG70617.1    GAMD01002465    JAA99125.1    KQ981523    KYN40482.1    KQ979110    KYN22602.1    GFDL01009354    JAV25691.1    AXCM01001459    KQ983227    KYQ46425.1    GL763924    EFZ18997.1    ADTU01008424    KYN40483.1    GL888558    EGI59526.1    KYQ46426.1    KQ414570    KOC71349.1    AXCN02000896    KQ977513    KYN02246.1    RSAL01000235    RVE43726.1    GEZM01081089    JAV61892.1    AGBW02012595    OWR44747.1    EGI59525.1    KQ435100    KZC14657.1    KQ435775    KOX74992.1    GEZM01055082    JAV73162.1    GEZM01081090    JAV61891.1    GBYB01013345    JAG83112.1    ADMH02001258    ETN63359.1    ACPB03006242    KQ980964    KYN11012.1    AK403635    BAM19834.1    GDKW01002751    JAI53844.1    GAHY01001523    JAA75987.1    GL448039    EFN85455.1    ATLV01012362    KE524785    KFB36610.1    KQ459604    KPI92181.1    GBBI01001520    JAC17192.1    GFTR01004480    JAW11946.1    KQ971352    EFA07262.1    APCN01000225    AAAB01008807    EAA03961.4    GEZM01087348    JAV58744.1    GEZM01087347    JAV58745.1    GEZM01087346    JAV58746.1    KQ971343    EFA04261.2    RVE43727.1    NNAY01000352    OXU28970.1    KK107293    EZA53418.1    KQ460594    KPJ13942.1    KZ288262    PBC30397.1    GFDF01009887    JAV04197.1    PCG70619.1    PCG70618.1    KQ760538    OAD59997.1    AK417186    BAN20401.1    UFQS01000285    UFQT01000285    SSX02419.1    SSX22794.1    UFQT01000393    SSX23925.1    AJVK01002966    AJVK01002967    DS235785    EEB16980.1    APGK01058332    KB741288    ENN70677.1    GL439967    EFN66526.1    GBYB01004719    JAG74486.1    KK855746    PTY23732.1    NNAY01004742    OXU17487.1    BABH01025065    CVRI01000018    CRK90398.1    KK852639    KDR19640.1    LJIG01022832    KRT78490.1    NEVH01012087    PNF30659.1    PNF30658.1    PNF30663.1    SSX22803.1    GEDC01028887    GEDC01021641    JAS08411.1    JAS15657.1    APGK01052042    APGK01052043    KB741208    KB631654    ENN72860.1    ERL85066.1    AJWK01012915    AJWK01012916    GEDC01006332    GEDC01003561    JAS30966.1    JAS33737.1   

Proteomes

UP000005204    UP000008820    UP000069940    UP000249989    UP000075901    UP000002320    + More
UP000218220    UP000075920    UP000078541    UP000078492    UP000075883    UP000075900    UP000075809    UP000005205    UP000075884    UP000007755    UP000053825    UP000075886    UP000078542    UP000283053    UP000007151    UP000076502    UP000053105    UP000069272    UP000000673    UP000015103    UP000075885    UP000008237    UP000030765    UP000053268    UP000075880    UP000007266    UP000075903    UP000076407    UP000075882    UP000075840    UP000075881    UP000075902    UP000007062    UP000005203    UP000002358    UP000215335    UP000053097    UP000053240    UP000242457    UP000192223    UP000092462    UP000009046    UP000019118    UP000000311    UP000183832    UP000027135    UP000235965    UP000030742    UP000092461   

PRIDE

H9JYA3    H9JYA2    H9J5M0    A0A087ZVV2    H9J5R9   

Pfam

PF00701   DHDPS        + More
PF09774   Cid2
PF03101   FAR1
PF02115   Rho_GDI
PF14492   EFG_II
PF16186   Arm_3
PF00514   Arm
PF02806   Alpha-amylase_C
PF03144   GTP_EFTU_D2
PF00009   GTP_EFTU
PF00128   Alpha-amylase

Interpro

IPR002220   DapA-like        + More
IPR013785   Aldolase_TIM       
IPR020624   Schiff_base-form_aldolases_CS       
IPR019171   Caffeine_induced_death_Cid2       
IPR004330   FAR1_DNA_bnd_dom       
IPR020625   Schiff_base-form_aldolases_AS       
IPR031319   A-amylase_C       
IPR014721   Ribosomal_S5_D2-typ_fold_subgr       
IPR000795   TF_GTP-bd_dom       
IPR032413   Arm_3       
IPR005225   Small_GTP-bd_dom       
IPR006048   A-amylase/branching_C       
IPR016024   ARM-type_fold       
IPR006047   Glyco_hydro_13_cat_dom       
IPR024792   RhoGDI_dom_sf       
IPR035647   EFG_III/V       
IPR000225   Armadillo       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR014756   Ig_E-set       
IPR027417   P-loop_NTPase       
IPR017853   Glycoside_hydrolase_SF       
IPR004161   EFTu-like_2       
IPR009000   Transl_B-barrel_sf       
IPR011989   ARM-like       
IPR013780   Glyco_hydro_b       
IPR041095   EFG_II       
IPR000406   Rho_GDI       
IPR006046   Alpha_amylase       
IPR000690   Matrin/U1-C_Znf_C2H2       

SUPFAM

SSF50447   SSF50447        + More
SSF54980   SSF54980       
SSF52540   SSF52540       
SSF48371   SSF48371       
SSF54211   SSF54211       
SSF51445   SSF51445       
SSF81296   SSF81296       

Gene 3D

3.20.20.70     1.25.10.10     2.60.40.1180     2.70.50.30     3.30.230.10    

ProteinModelPortal

H9JYA3   H9JYA2   A0A1S4FMA1   Q16WA2   A0A2W1BRW0   A0A2H1W3A5   + More
H9J5M0   A0A182GZ29   A0A182T0U9   B0VZR3   A0A2A4JEY1   A0A182WIY3   T1DNX9   A0A195FJP7   A0A151JBW8   A0A1Q3FDN6   A0A182M3E0   A0A182RB21   A0A151WF58   E9IK31   A0A158P437   A0A195FJA2   A0A182NHC9   F4X1Z0   A0A151WF36   A0A0L7RKK5   A0A182QP80   A0A195CNB7   A0A3S2L1T7   A0A1Y1KKF9   A0A212ETD9   F4X1Y9   A0A154PSC7   A0A0N0BGL6   A0A1Y1LHN7   A0A1Y1KN37   A0A182FG30   A0A0C9RWH4   W5JKQ9   T1HX93   A0A182PA02   A0A151IUE1   I4DPJ4   A0A0P4VHC9   R4FL94   A0A158P438   E2BFR7   A0A084VF66   A0A194PFM7   A0A023F7H9   A0A182JMC6   A0A224XHH7   D6WP51   A0A182VFB3   A0A182X6K7   A0A182KS08   A0A182I3V6   A0A182JTV7   A0A182TEK1   Q7PTG5   A0A1Y1KBI2   A0A1Y1KGM9   A0A1Y1KH54   D6WME9   A0A3S2NC89   A0A087ZVV2   K7IMV4   A0A232FEM4   A0A026WBS3   A0A0N0PCS5   A0A2A3EF84   A0A1L8DCV7   A0A2A4JFM5   A0A2A4JFY8   A0A310SPK1   R4WNH6   A0A1W4X7X0   A0A1W4X969   A0A336KD48   A0A336M102   A0A1B0D3L4   E0VUC4   N6TWK1   E2AJ86   A0A0C9QMI7   A0A2R7WW08   A0A232EGK8   H9J5R9   A0A1J1HV81   A0A067RJQ4   A0A0T6ATU8   A0A2J7QQ05   A0A2J7QPZ4   A0A2J7QQ19   A0A336M1U9   A0A1B6CQ74   N6TUA9   A0A1B0CHZ1   A0A1B6DZ58  

PDB

6ARH     E-value=6.08357e-07,     Score=125

KEGG

101739517    K01639 N-acetylneuraminate lyase [EC:4.1.3.3] | (RefSeq) N-acetylneuraminate lyase-like

PATHWAY

00520    Amino sugar and nucleotide sugar metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016829   GO:0005094   GO:0005525   GO:0043169   GO:0005975   GO:0005737   GO:0003924   GO:0003676   GO:0008270   GO:0005634   GO:0008152   GO:0003824   GO:0004180   GO:0005515   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

PANTHER

PTHR12128  

Length:

229

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

7.90224999999999

Exp number, first 60 AAs:

0.08751

Total prob of N-in:

0.02479

outside

1  -  229

 

 

Pi

24.870139

Theta

193.053275

Tajima's D

0.352512

CLR

0.932333

CSRT

0.467776611169442

Interpretation

Uncertain