Gene

KWMTBOMO15026

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr25(-):2910462-2912152      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.761

CDS

ATGGTAGTGCAAGGCAGAGGGGGAAGAGGTCGACCGAATAAGACATGGATGGAGTGTGTGAATGACGATATGAGAGAGAGAGAGGATTGTTGGAAACCAGTGCTATCACATTCAACTGCTCACTTTCAGAATCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTCCTTCCCAATGTCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACAGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCTGCTGACTATCAGTGGCGGGCTGACCTTCGTATCCGGGGCGTGGCACGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGGCATGGTCCAGACGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGGCTTGGACACGGCGGAGCACACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTTTTGGAGTCGTCGTGGCCTAA

Protein

MVVQGRGGRGRPNKTWMECVNDDMREREDCWKPVLSHSTAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADLRIRGVARPSPSVVRARRAQSRRSVLEAWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECHHCGCGLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVFGVVVA

Uniprot

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY33   Q8MY31   Q8MY35   A0A2W1C3J5   A0A3S2N998   O01419   A0A0J7N1D9   A0A0J7MY07   A0A0J7N7H9   A0A0J7KCQ3   A0A194R5D3   A0A0J7MZM4   A0A0J7KS67   A0A0L7R7C3   A0A2H1WNZ5   A0A0J7KJG6   A0A3L8DDV9   A0A0J7NEG9   A0A0J7KLT9   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KIY5   A0A0J7KJH4   A0A0J7KM11   A0A0J7N7S8   A0A0J7KM81   A0A0J7KIY3   A0A2S2NPF9   A0A2S2PJ67   A0A0J7JXN3   A0A3L8DIL1   A0A3L8D2G3   A0A0J7KQK3   A0A0J7KPR0   A0A0J7KL06   A0A0J7MX22   A0A0J7K3R6   A0A0J7KYD2   A0A0J7KIM6   A0A0J7KC11   A0A2S2PEU2   A0A0J7K3F1   E2A7V5   A0A0J7KFG9   A0A0J7NAV8   J9KRD0   J9KNG8   A0A2H8THF8   A0A2S2PSC1   A0A0J7JYP2   A0A0J7NCZ4   A0A0J7KIW1   A0A0J7KMU1   A0A0J7K6Z4   A0A0J7KPZ3   A0A0J7KGJ6   X1WSG8   J9KJG8   A0A0J7KKI5   A0A2H8TR36   A0A2S2QW03   X1WXT5   A0A0J7NMN5   A0A0J7K840   X1WJY4   A0A0J7KF37   J9LJ80   A0A0J7K4I2   A0A0J7JXX4   A0A0J7KRB8   A0A2S2NME4   A0A2S2P6S8   A0A2S2P557   A0A2S2P9B0   A0A2S2NQT6   A0A2S2PDK9   X1WPI5   A0A2S2N8I2   A0A023EQB7   J9LDW8   F7IYV6   A0A2S2PEZ7   A0A139W942  

Pubmed

12644555    28756777    9092665    26354079    30249741    20798317    + More
24945155    18362917    19820115   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    KZ150386    PZC71062.1    + More
KZ150308    PZC71477.1    KZ149950    PZC76665.1    AB078935    BAC06462.1    AB078930    BAC06454.1    AB078931    BAC06456.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    RSAL01000481    RVE41577.1    D85594    BAA19776.1    LBMM01012027    KMQ86470.1    LBMM01014132    KMQ85305.1    LBMM01008861    KMQ88580.1    LBMM01009494    KMQ88097.1    KQ460685    KPJ12887.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01003679    KMQ93242.1    KQ414641    KOC66782.1    ODYU01009945    SOQ54696.1    LBMM01006671    KMQ90407.1    QOIP01000010    RLU18098.1    LBMM01006110    KMQ90925.1    LBMM01005733    KMQ91252.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    LBMM01006954    KMQ90166.1    LBMM01006657    KMQ90417.1    LBMM01005707    KMQ91279.1    LBMM01008682    KMQ88705.1    LBMM01005634    KMQ91349.1    LBMM01006909    KMQ90209.1    GGMR01006442    MBY19061.1    GGMR01016864    MBY29483.1    LBMM01024024    KMQ82631.1    QOIP01000007    RLU20280.1    QOIP01000031    RLU14697.1    LBMM01004272    KMQ92618.1    LBMM01004634    KMQ92224.1    LBMM01006063    KMQ90967.1    LBMM01014909    KMQ85000.1    LBMM01015018    KMQ84954.1    LBMM01002052    KMQ95336.1    LBMM01007036    KMQ90099.1    LBMM01009738    KMQ87908.1    GGMR01015354    MBY27973.1    LBMM01015025    KMQ84953.1    GL437417    EFN70484.1    LBMM01008349    KMQ88951.1    LBMM01007425    KMQ89740.1    ABLF02026677    ABLF02032994    ABLF02059021    ABLF02064578    ABLF02005203    ABLF02041316    GFXV01001748    MBW13553.1    GGMR01019609    MBY32228.1    LBMM01020849    KMQ83202.1    LBMM01006640    KMQ90440.1    LBMM01006725    KMQ90373.1    LBMM01005216    KMQ91703.1    LBMM01012595    KMQ86127.1    LBMM01004505    KMQ92346.1    LBMM01007659    KMQ89538.1    ABLF02004597    ABLF02041324    ABLF02041886    LBMM01006287    KMQ90731.1    GFXV01003903    MBW15708.1    GGMS01012744    MBY81947.1    ABLF02004854    ABLF02041317    LBMM01003245    KMQ93755.1    LBMM01011877    KMQ86578.1    ABLF02011238    LBMM01008448    KMQ88867.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    LBMM01014294    KMQ85237.1    LBMM01021647    KMQ83033.1    LBMM01003988    KMQ92922.1    GGMR01005740    MBY18359.1    GGMR01012534    MBY25153.1    GGMR01011974    MBY24593.1    GGMR01012877    MBY25496.1    GGMR01006964    MBY19583.1    GGMR01014918    MBY27537.1    ABLF02016099    ABLF02041594    GGMR01000779    MBY13398.1    GAPW01001826    JAC11772.1    ABLF02016435    ABLF02016436    ABLF02064751    AB593326    BAK38647.1    GGMR01015159    MBY27778.1    KQ972691    KXZ75805.1   

Proteomes

UP000283053    UP000036403    UP000053240    UP000053825    UP000279307    UP000000311    + More
UP000007819    UP000007266   

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF13843   DDE_Tnp_1_7
PF05699   Dimer_Tnp_hAT

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       
IPR029526   PGBD       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF140996   SSF140996       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY33   Q8MY31   Q8MY35   A0A2W1C3J5   A0A3S2N998   O01419   A0A0J7N1D9   A0A0J7MY07   A0A0J7N7H9   A0A0J7KCQ3   A0A194R5D3   A0A0J7MZM4   A0A0J7KS67   A0A0L7R7C3   A0A2H1WNZ5   A0A0J7KJG6   A0A3L8DDV9   A0A0J7NEG9   A0A0J7KLT9   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KIY5   A0A0J7KJH4   A0A0J7KM11   A0A0J7N7S8   A0A0J7KM81   A0A0J7KIY3   A0A2S2NPF9   A0A2S2PJ67   A0A0J7JXN3   A0A3L8DIL1   A0A3L8D2G3   A0A0J7KQK3   A0A0J7KPR0   A0A0J7KL06   A0A0J7MX22   A0A0J7K3R6   A0A0J7KYD2   A0A0J7KIM6   A0A0J7KC11   A0A2S2PEU2   A0A0J7K3F1   E2A7V5   A0A0J7KFG9   A0A0J7NAV8   J9KRD0   J9KNG8   A0A2H8THF8   A0A2S2PSC1   A0A0J7JYP2   A0A0J7NCZ4   A0A0J7KIW1   A0A0J7KMU1   A0A0J7K6Z4   A0A0J7KPZ3   A0A0J7KGJ6   X1WSG8   J9KJG8   A0A0J7KKI5   A0A2H8TR36   A0A2S2QW03   X1WXT5   A0A0J7NMN5   A0A0J7K840   X1WJY4   A0A0J7KF37   J9LJ80   A0A0J7K4I2   A0A0J7JXX4   A0A0J7KRB8   A0A2S2NME4   A0A2S2P6S8   A0A2S2P557   A0A2S2P9B0   A0A2S2NQT6   A0A2S2PDK9   X1WPI5   A0A2S2N8I2   A0A023EQB7   J9LDW8   F7IYV6   A0A2S2PEZ7   A0A139W942  

KEGG

100127037    K22984 odorant receptor | (RefSeq) Or-46, BmOr-46, Or46; olfactory receptor 46

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0046983  

Length:

285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.996390000000001

Exp number, first 60 AAs:

0.01335

Total prob of N-in:

0.06786

outside

1  -  285

 

 

Pi

57.39989

Theta

49.840148

Tajima's D

-0.750128

CLR

69.61988

CSRT

0.184040797960102

Interpretation

Uncertain