Silkworm Genome Informatics Database

Gene

KWMTBOMO15014

Pre Gene Modal

BGIBMGA004871

Annotation

PREDICTED:_uncharacterized_protein_LOC106136203_[Amyelois_transitella]

Location

Bomo_Chr25(-):2444253-2447532 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.158 Nuclear Reliability : 1.114

CDS

ATGGTCAAGTTAAATATTTCTAATTTATTATTGGTGATATTTGCTCTGAACAATATTAGTGTTTATGGTCAAATAAACAACGTGAGATTGGTCGACCACGCAGATTATATGATAACAGTAATACAGAAGACAGTAGAAGAATTTGAAAACAGGGAATGGTGTAATTTCAAACTGCCTGACGTCGTTCAGGAAATAAATGAGGTCATTTTCGGACAAGAAACAAAAGGAACAGTTAAGTACGCCAACGGTTTCCTGGTCTCCGTACAGCATTTGGACATAATGCAGTCGACTGTCCAACAATTTTGGAACCGTACACACCCAGGGCTAGTTGAAGTCAGGGGAAGGTTGAGGATGCATGATGTGACAGTAGGGTTTGATGTATTGGCTAACTTGGATGGTGAGCACAGATATTCTGGAACTTATAGGCATCCAATGGTAAATTTCGACTTTACGGTACAAAAGGATTTAAATATTGACGAGTTGAGTGTGAATGTGATTGGATCGGTACCGAATAGCAATAATTTGGTGCGCTTCCTGCCCGAAGACCGCATAACTGATATTCTGAATACTGTGTACAACAGAGCGTCATCAACGCCAGGGATTGTGGACTGGGCCTTCGAAATCATTCAGCCCATAGCTGATGAAATCGTACAAAACGAAGTACAATTCCCGATCATATGCTACAACTGTCCTGTCAGATAA

Protein

MVKLNISNLLLVIFALNNISVYGQINNVRLVDHADYMITVIQKTVEEFENREWCNFKLPDVVQEINEVIFGQETKGTVKYANGFLVSVQHLDIMQSTVQQFWNRTHPGLVEVRGRLRMHDVTVGFDVLANLDGEHRYSGTYRHPMVNFDFTVQKDLNIDELSVNVIGSVPNSNNLVRFLPEDRITDILNTVYNRASSTPGIVDWAFEIIQPIADEIVQNEVQFPIICYNCPVR

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9J5T1 A0A2A4JTZ8 A0A2W1C0F4 A0A2H1WNY9 A0A194PFT3 A0A2A4JU81 + More
A0A194RHN1 A0A1E1VXT7 A0A2H1WNV7 A0A2A4JT51 A0A340TB29 T1DLY1 A0A182LEP7 Q7PR80 A0A182XUI4 A0A2C9GR65 A0A2S9T6J5

Pubmed

19121390 28756777 26354079 20966253 12364791 14747013 + More
17210077

EMBL

BABH01025161 NWSH01000660 PCG74953.1 KZ149903 PZC78446.1 ODYU01009975 + More
SOQ54748.1 KQ459604 KPI92152.1 PCG74952.1 KQ460205 KPJ17072.1 GDQN01011527 JAT79527.1 SOQ54749.1 PCG74956.1 GAMD01000186 JAB01405.1 AAAB01008859 EAA07695.4 APCN01000295 NXGE01000003 PRM94457.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000075903 UP000075882 + More
UP000007062 UP000076407 UP000075840 UP000238281

PRIDE

H9J5T1

Pfam

PF00106 adh_short

Interpro

IPR036291 NAD(P)-bd_dom_sf + More
IPR002347 SDR_fam

SUPFAM

SSF51735 SSF51735

ProteinModelPortal

H9J5T1 A0A2A4JTZ8 A0A2W1C0F4 A0A2H1WNY9 A0A194PFT3 A0A2A4JU81 + More
A0A194RHN1 A0A1E1VXT7 A0A2H1WNV7 A0A2A4JT51 A0A340TB29 T1DLY1 A0A182LEP7 Q7PR80 A0A182XUI4 A0A2C9GR65 A0A2S9T6J5

KEGG

101741099 no KO assigned | (RefSeq) uncharacterized LOC101741099

GO

SignalP

Position: 1 - 23, Likelihood: 0.888609

Length:

233

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.57123999999999

Exp number, first 60 AAs:

4.56989

Total prob of N-in:

0.19225

outside

1 - 233

Pi

224.665056

Theta

167.004018

Tajima's D

1.132067

CLR

0.367801

CSRT

0.699115044247788

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics