Gene

KWMTBOMO15009

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr25(-):2313090-2316431      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.685

CDS

ATGATTGCACACCGCAGAACCAGGCCCCTAGTCCCCGGCGGCCCCGCTATTCCTGGTTACGGTAGCGGCCATGGTAACGGCGGGGCAAGGGGTGCTAAGAATCCCCGGCAGAGATCCGGCTACCACCCCCCTTCACAACGACAACTGGCCCTGGTAACATACAACGTGCGCACTTTGAGGTTGGACGAGAAGCTAATAGAGCTGGAAGAAGAAATGAGCAAGTTGCGCTGGGACGTTATTGGTTTATCGGAGATCCGAAGAGAGGGGAGGATACGAAAACCTTACAGTCCGGCCACTTGTTCTACTACCGGGAGGGAGAACAGAAGTCCCAAGGTATACGCCCCATCGACGTCACATCCAGACGATGAAGTGGAAGCTACGTATGAGGACATTAGTAGAGCCATACGTAGCTCCCAATCACATTTTACCGTTGTTATGGGAGATTTCAATGCAAAACTGGGCCGTAGAGGCGATGATGAGTTGAAAGTGGGGCCATTTGGATTTGGGCAGCGGAATCCCAGAGGACAGATGCTGGCGGACTTTATGGAGAAGGAAGGACTCTTTATGATGAATTCTTTCTTCAAGAAGCCGCCACAACGGAGATGGACCTGGTTGAGTCCCGGCGGTGTAACAAGAAATGAAATTGACTTCATCATGAGCACCAACAGACAGATATTCAACGATGTCTCTGTGATCAACAGTGTAAAAACAGGAAGTGATCACCGAATCATCAGAGGCATGTTGAATATCAATGTCAGACTGGAAAGATCGCGTCTGATGAAGTCAACGCTTCGACCGTCGAATGCACAAATCCAAAACCCCGAGAGCTTTCAACTCGAATTGGCTAATCGCTTCGAATGGCTAAACAGCTGCGCATCAGTGGACGATGTAAACAGCAGCCTGGTAGAGACTGTCCGTACAGTAGGGTCCAAATTTTTCAAAACCCACCGTAAGAATAGACCTCAGAAACTATCCGACCGCACCCGAAACCTCATGGCTAGTCGACGTTTGATGACGCTCCAAACTTCGGAGGACGCTGAGTCATATAGGCAACTCAATAGACATATCATGAGGTCCTTGCGACACGATCTACGCTCCTTTAATACTCAGCGTATTAAAGAGACGATTGAGCGAAACCAAGGCTCTAAAGTGTTCGCAAGAGACGCTTCTATTGGGCAAAGCCAGCTGACGAAGCTGAAGACCGAAGATGGACATGTAACGTCGAATAAGTCAGAGGTCCTGCGGGAGATAGAGAGGTTCTGCGGGCAGCTGTTTACCTCGGTCTCAGCTGAACCGCAAGGTTTAGCTGCAGACCCTAGAGCCAAGCTAACCCGACACTACACCGAAGACATCCCGGACATCAGCCTGTACGAGATTAGGATGGCTCTCAAACAGCTTAAGAATAACAAGGCACCGGGCGAGGATGGAATTACTACGGAGCTTCTGAAAGCGGGCGGGACGCCGGTACTGAAAGTCCTTCAGAAGCTCTTCAATTCCTCTTTGCTCGATGGAAAACCGCCACAGGCATGGAGCAGGGGTGTTGTGATCCTGTTCTTCAAAAAAGGTGACAAAACCTTATTGAAGAACTATAGGCCCATAGCACTGCTGAGCCATGTCTACAAGCTGTTCTCGAGAGTCATCACGAAGCGTCTCGAACGCAGGTTTGATGACTTCCAGCCTACCGAACAAGCCGGTTTCCGAAAAGGCTACAGTACCATAGACCACATACATACGCTGCGGCAGATTGCACAGAAGACCGAAGAGTACAATCGGCCATTATGCTTAGCGTTTGTGGACTATGAGAAAGCCTTTGATTCCGTCGAAACATGGGCAGTCCTTAGATCTCTCCAGCGGTGCGGTATTGACCACCGGTACATCGAAGTATTGAAGTGTTTGTATAATAACGCCACCATGTCAGTCCGAGTACAGGAGCATTGCACGAAGGAAATCCCTGTAAAGAGAAGAGTGAGACAGGGAGATGTGATATCTCCGAAACTGTTTATCACTGCTCTGGAGGATTCCTTCAAGCTTCTGGAATGGCAAGGTCTTGGCATCAATATTAACGGCGAATACATCACTCATCTTCGGTTTGCCGATGACATCGTGGTCATGGCAGAGTCGCTGGAAGATTTAGAGCGTATGCTCGGTGACCTCAGTAGGGTTTCTCAACAAGTGGGTCTTAAAATGAACATGGACAAAACAACAATCATGTACAATGTCCATGTTGCACCCACCATAGTTACTGTTGGGAGTTCTACTCTTGAAGTTGTTGACGAATATATATACCTAGGACAGGCAGTCCGATTAGGTAGGTCCAACTTTGAGAGAGAGGTCAGTAGACGGATCCAACTCGGCTGGGCAGCGTTCGGTAAACTGCACAACGTCTTCTCGTCCAAAATACCTCAGTGCCTTAAGACAAAGGCGTACAACCAATGTGTGTTACCAGTGATGACTTACGGCTCGGAGACGTGGTGCTTCACTAGGGATCTTTTTAGAAGGCTCAAAGTCGCGTAG

Protein

MIAHRRTRPLVPGGPAIPGYGSGHGNGGARGAKNPRQRSGYHPPSQRQLALVTYNVRTLRLDEKLIELEEEMSKLRWDVIGLSEIRREGRIRKPYSPATCSTTGRENRSPKVYAPSTSHPDDEVEATYEDISRAIRSSQSHFTVVMGDFNAKLGRRGDDELKVGPFGFGQRNPRGQMLADFMEKEGLFMMNSFFKKPPQRRWTWLSPGGVTRNEIDFIMSTNRQIFNDVSVINSVKTGSDHRIIRGMLNINVRLERSRLMKSTLRPSNAQIQNPESFQLELANRFEWLNSCASVDDVNSSLVETVRTVGSKFFKTHRKNRPQKLSDRTRNLMASRRLMTLQTSEDAESYRQLNRHIMRSLRHDLRSFNTQRIKETIERNQGSKVFARDASIGQSQLTKLKTEDGHVTSNKSEVLREIERFCGQLFTSVSAEPQGLAADPRAKLTRHYTEDIPDISLYEIRMALKQLKNNKAPGEDGITTELLKAGGTPVLKVLQKLFNSSLLDGKPPQAWSRGVVILFFKKGDKTLLKNYRPIALLSHVYKLFSRVITKRLERRFDDFQPTEQAGFRKGYSTIDHIHTLRQIAQKTEEYNRPLCLAFVDYEKAFDSVETWAVLRSLQRCGIDHRYIEVLKCLYNNATMSVRVQEHCTKEIPVKRRVRQGDVISPKLFITALEDSFKLLEWQGLGININGEYITHLRFADDIVVMAESLEDLERMLGDLSRVSQQVGLKMNMDKTTIMYNVHVAPTIVTVGSSTLEVVDEYIYLGQAVRLGRSNFEREVSRRIQLGWAAFGKLHNVFSSKIPQCLKTKAYNQCVLPVMTYGSETWCFTRDLFRRLKVA

Uniprot

D7F158   D7F159   D7F164   D7F157   D7F165   D7F160   + More
D7F166   A0A3S2N805   A0A2H1VS24   A0A2W1BZV1   A0A1S3HCU5   A0A2G8JFM9   A0A0K0FAW8   A0A0N5C0B1   D7F177   A0A016V9Q8   A0A023EWU8   A0A016V4Q8   A0A016S1D2   A0A016V419   D7F176   A0A0P4VWD0   A0A016SG46   A0A016TK11   A0A016W4R1   D7F179   E3MH09   E3NC15   A0A2R2MNC1   A0A069DX96   A0A016SPR9   A0A016S795   A0A016VVN3   A0A016S5B2   A0A016U784   A0A016SCZ8   A0A016WA79   A0A016TIG5   A0A016S403   A0A016SX67   A0A016WFS9   A0A016VGA0   A0A016WUN2   A0A016SGC3   A0A016RUR3   A0A023EXV2   A0A016TQJ1   A0A016UY78   A0A016X207   A0A016W1X2   A0A016WRX9   A0A016VT25   D7F178   A0A016SY13   A0A2H1WF27   A0A016U6B7   A0A016T4C4   A0A016SCL7   A0A016WYN9   A0A016VLP0   A0A016V007   A0A016U123   A0A016UJS4   A0A016WPX9   A0A2H2JFN0   A0A016RV73   A0A016TX70   A0A016SXL6   A0A016WPY4   A0A016SQY7   A0A016S7F6   A0A016RRX8   A0A016S4W9   A0A016S4J2   A0A016WCB8   A0A016TK92   A0A016SCT9   A0A016S6J0   A0A016ULU9   A0A016SWH8   A0A016W5S4   A0A016T8K0   A0A016T5Z1   A0A016T636   A0A016SLV8   A0A016S3N7   A0A016WNH0   A0A016WS23   A0A016WN14   A0A016WEQ1   K7IG35  

Pubmed

20470440    28756777    29023486    25730766    25474469    27129103    + More
26334808   

EMBL

FJ265543    ADI61811.1    FJ265544    ADI61812.1    FJ265549    ADI61817.1    + More
FJ265542    ADI61810.1    FJ265550    ADI61818.1    FJ265545    ADI61813.1    FJ265551    ADI61819.1    RSAL01001818    RVE40675.1    ODYU01004088    SOQ43598.1    KZ149907    PZC78256.1    MRZV01002136    PIK34564.1    FJ265562    ADI61830.1    JARK01001351    EYC23458.1    GBBI01004877    JAC13835.1    JARK01001354    EYC21713.1    JARK01001655    EYB84321.1    EYC21986.1    FJ265561    ADI61829.1    GDKW01001596    JAI54999.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    FJ265564    ADI61832.1    DS268444    EFP01729.1    DS268591    EFO92565.1    GBGD01000453    JAC88436.1    JARK01001531    EYB92324.1    JARK01001621    EYB86109.1    JARK01001340    EYC30828.1    JARK01001626    EYB85833.1    JARK01001389    EYC11015.1    JARK01001581    EYB88505.1    JARK01000460    EYC36749.1    JARK01001435    EYC02496.1    JARK01001639    EYB85201.1    JARK01001500    JARK01001343    EYB95040.1    EYC28825.1    JARK01000302    EYC38674.1    JARK01001346    EYC26445.1    JARK01000109    EYC42952.1    JARK01001568    EYB89432.1    JARK01001711    EYB81734.1    GBBI01004876    JAC13836.1    JARK01001421    EYC04912.1    JARK01001359    EYC20105.1    JARK01000008    EYC46079.1    JARK01001338    EYC33297.1    JARK01000132    EYC42415.1    EYC30744.1    FJ265563    ADI61831.1    JARK01001497    EYB95322.1    ODYU01008249    SOQ51673.1    EYC10874.1    JARK01001475    EYB97550.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001470    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001353    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01000063    EYC44387.1    JARK01001344    EYC28216.1    JARK01001357    EYC20551.1    JARK01001401    EYC08686.1    JARK01001372    EYC15614.1    JARK01000161    EYC41641.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    JARK01001407    EYC07212.1    EYB95049.1    JARK01000173    EYC41342.1    JARK01001524    EYB92970.1    JARK01001612    EYB86585.1    JARK01001730    EYB81048.1    JARK01001637    EYB85284.1    EYB85282.1    JARK01000388    EYC37469.1    EYC03125.1    JARK01001582    EYB88498.1    JARK01001618    EYB86258.1    JARK01001370    EYC16150.1    JARK01001502    EYB94855.1    JARK01000802    EYC34990.1    JARK01001462    EYB98944.1    JARK01000204    EYB98082.1    EYC40602.1    EYB98081.1    EYC40601.1    JARK01001543    EYB91356.1    EYB85285.1    JARK01000177    EYC41210.1    JARK01000146    EYC42042.1    EYC41209.1    JARK01000347    EYC38051.1   

Proteomes

UP000283053    UP000085678    UP000230750    UP000035680    UP000046392    UP000024635    + More
UP000008281    UP000005237   

PRIDE

D7F158    D7F159    D7F164    D7F157    D7F165    D7F160    + More
D7F166    D7F177    D7F176    D7F179    D7F178   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       

SUPFAM

SSF56219   SSF56219        + More
SSF56436   SSF56436       

Gene 3D

3.60.10.10     3.10.100.10    

ProteinModelPortal

D7F158   D7F159   D7F164   D7F157   D7F165   D7F160   + More
D7F166   A0A3S2N805   A0A2H1VS24   A0A2W1BZV1   A0A1S3HCU5   A0A2G8JFM9   A0A0K0FAW8   A0A0N5C0B1   D7F177   A0A016V9Q8   A0A023EWU8   A0A016V4Q8   A0A016S1D2   A0A016V419   D7F176   A0A0P4VWD0   A0A016SG46   A0A016TK11   A0A016W4R1   D7F179   E3MH09   E3NC15   A0A2R2MNC1   A0A069DX96   A0A016SPR9   A0A016S795   A0A016VVN3   A0A016S5B2   A0A016U784   A0A016SCZ8   A0A016WA79   A0A016TIG5   A0A016S403   A0A016SX67   A0A016WFS9   A0A016VGA0   A0A016WUN2   A0A016SGC3   A0A016RUR3   A0A023EXV2   A0A016TQJ1   A0A016UY78   A0A016X207   A0A016W1X2   A0A016WRX9   A0A016VT25   D7F178   A0A016SY13   A0A2H1WF27   A0A016U6B7   A0A016T4C4   A0A016SCL7   A0A016WYN9   A0A016VLP0   A0A016V007   A0A016U123   A0A016UJS4   A0A016WPX9   A0A2H2JFN0   A0A016RV73   A0A016TX70   A0A016SXL6   A0A016WPY4   A0A016SQY7   A0A016S7F6   A0A016RRX8   A0A016S4W9   A0A016S4J2   A0A016WCB8   A0A016TK92   A0A016SCT9   A0A016S6J0   A0A016ULU9   A0A016SWH8   A0A016W5S4   A0A016T8K0   A0A016T5Z1   A0A016T636   A0A016SLV8   A0A016S3N7   A0A016WNH0   A0A016WS23   A0A016WN14   A0A016WEQ1   K7IG35  

PDB

6AR3     E-value=4.75953e-06,     Score=123

KEGG

105841685    no KO assigned | (RefSeq) uncharacterized LOC105841685

GO

GO:0004519   GO:0003964   GO:0016021  

Length:

837

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05593

Exp number, first 60 AAs:

0.00223

Total prob of N-in:

0.00026

outside

1  -  837

 

 

Pi

458.427795

Theta

196.02821

Tajima's D

4.118014

CLR

0.144434

CSRT

0.9994000299985

Interpretation

Possibly Balancing Selection