Gene

KWMTBOMO15002  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004873

Annotation

PREDICTED:_polyribonucleotide_nucleotidyltransferase_1?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr25(-):2139891-2157781      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.431

CDS

ATGTTACATAAAAAATGTATATTATTAACAAAATTGAAGACGAAAAGTCGGTATTACTGTAGATTTCTCTCATCACAAGCCAAACTTGGCGTAATTGATATTCCTTTTACTAACGGGACCACCCTGAAATTGTCCACGGGCCGTTACGCAAGATTCGCAGATGGAGCATGTGTTGTGTCCCTCGGTAACACAAGCGTGCTATCAACTGTTGTGTCAAAAGCTAAACAAAATCCCACTTCGTTCTTACCACTCACAGTTGACTACAGACAAAAAGCCGCAGCCGCAGGACGAATTCCTACCAATTTTTTTAGGAGAGAACTGGGTCCATCAGAAAAAGAAATTCTTACTTCACGAGTAATAGATCGTTCCCTACGTCCGCTCTTCCCGAATAACTACAACTATGATACACAGATAGTATGCAACATGTTGGCGATGGATGGAACGAATTTGCCTGAAACAGTAGCTATAAATGCGGCAAGTGCAGCACTTGCACTTTCCGATGTGCCGTGGAATGGCCCTGTTGGTGCTGTTCGATTAGGTCAAATTGACAATGAATTAATAATAAATCCAACACGTAAAGAATTGGAGAAGTCTGTTTTGAACTTAATCGTGACAGCTACCAGCAGTAATCTAGTAGTGATGCTGGAAGGTAGCGCCTCCGACATCCTACAGCAGGATCTACTCAAGGCCATCAAATTAGGAACCAAAGAAGCTCAACAAATTGTGAGAGGGATAGAGAAACTGCAGAAGGATCATGGTAAAATGAAAAGAGAATATGAAATTCAACCACCTCTAGAACAAAACATTGTTGATACTATCAAAATATTATCTTCTATGAAAATCAGAGAAATATTGAGTGACTTCACCCACGATAAGACGTCCCGGGATAACGCCATATCCGATCTACGACAGACCGTGCTGAACCAGTTCCGGGACACGAACATAGACGTGACCCGTCTCCAGGACTGCTTCAACGAGAACCTCAAGCAGATATTCCGCGAGATGATCTTCGAGACTGACACGAGATGCGACGGCCGGCATCTTGATCAGCTCAGAGATATTAGCTGCCAGGTGTCGCTGTACGAGCCGCTCCACGGCAGCGCGGTGTTCCAGCGCGGACAGACGCAGGTGCTGTGCACCGTCGCCTTCGACTCGCCCGACAGCGCGCTCAGGGTGGACACGCTCACCATGCTCACCAGCGGAATCAAAGAGAAAAGTTTCTTCCTGCACTACGAATTCCCGCCATACGCAACCGGCGAGGTGGGTCGCACCGGAGCCCCAGGGCGCCGCGAGGCCGGCCACGGAGCCCTGGCCGAGCGGGGGCTGCTGCCCGTCGTGCCGCAACTACCCTACACCGTCAGACTTACAGCTGAAGTCTTAGAATCGAATGGATCGAGTTCGATGGCATCGGTGTGCGGGGGGTCGCTGGCCCTCATGGACGCGGGGGTGCCGCTGGGGGGGCCGGCCGCGGGGGTCGCCGTGGGGCTCGTCTCTAAAGCCGACGAGAACGGTCACATGGCCGACTACAGGATACTCACTGATTTGTTAGGCATAGAAGACTACATGGGCGATATGGACTTCAAAGTGGCCGGCACGAAGAAGGGCATCACGGCGCTGCAGGCGGACATCAAGCTGGCCGGCCTGCCGCTCCGCGTCGTCATGGAGGCCGTGCAGCGGGCTTGCGACGCCAAGGCCAAGATCATCGACATCATGAACCAATGCCTCGACGCACCCAGACAAGGATTAAAAGAGAACATGCCAGTGATTGAAGAGATCGAAGTGGAAGCTCACAAGCGGCCCAAGCTCCACGGGCTCGGCGGCTCCAACTTGAAGAAGCTTTACGTTGAGACCGGCGTGCAGGTGACGCCAGTGGACGAGACTAAGTACAGCGTGTTCGCGCCCTCCCGGCCCGCCATGGACGAGGCCCGCTCGCGTATGGCCTCCTGGCTCACCTCCGAGCGGACCCCAGAGCTGGAGTTCGGGGCCATATACAAGGCCAGAGTGGTCGAGGTCCGGGACATCGGCGTGCTGGTCACGCTGTACCCAGGAATGAGTCCGGCTTTAGTGCACAACACGCAGCTGGACCACAGGAAGATAATGCACCCCTCGGTTCTGGGGCTGGAAGTCGGCTCGGAGATCCAGGTGAAGTACTTCGGGCGGGACCCCGTGTCGGGGCAGGTCCGCTTGTCCAAGAAAGTGCTATCGTCGCCGCCGCCCGCCGTCGTCAGGAATTTGGATAAAAGTTAG

Protein

MLHKKCILLTKLKTKSRYYCRFLSSQAKLGVIDIPFTNGTTLKLSTGRYARFADGACVVSLGNTSVLSTVVSKAKQNPTSFLPLTVDYRQKAAAAGRIPTNFFRRELGPSEKEILTSRVIDRSLRPLFPNNYNYDTQIVCNMLAMDGTNLPETVAINAASAALALSDVPWNGPVGAVRLGQIDNELIINPTRKELEKSVLNLIVTATSSNLVVMLEGSASDILQQDLLKAIKLGTKEAQQIVRGIEKLQKDHGKMKREYEIQPPLEQNIVDTIKILSSMKIREILSDFTHDKTSRDNAISDLRQTVLNQFRDTNIDVTRLQDCFNENLKQIFREMIFETDTRCDGRHLDQLRDISCQVSLYEPLHGSAVFQRGQTQVLCTVAFDSPDSALRVDTLTMLTSGIKEKSFFLHYEFPPYATGEVGRTGAPGRREAGHGALAERGLLPVVPQLPYTVRLTAEVLESNGSSSMASVCGGSLALMDAGVPLGGPAAGVAVGLVSKADENGHMADYRILTDLLGIEDYMGDMDFKVAGTKKGITALQADIKLAGLPLRVVMEAVQRACDAKAKIIDIMNQCLDAPRQGLKENMPVIEEIEVEAHKRPKLHGLGGSNLKKLYVETGVQVTPVDETKYSVFAPSRPAMDEARSRMASWLTSERTPELEFGAIYKARVVEVRDIGVLVTLYPGMSPALVHNTQLDHRKIMHPSVLGLEVGSEIQVKYFGRDPVSGQVRLSKKVLSSPPPAVVRNLDKS

Uniprot

A0A2H1WL21   A0A2A4JVN5   A0A212FPY4   D6WRI0   A0A067QS60   N6U217   + More
A0A1B6G5H2   A0A336M3M1   A0A0P5Z0E1   A0A0P5EJ68   A0A0P6BFE1   A0A0P5IKB5   A0A0P4ZH66   K7IR75   A0A232ELF4   A0A182Q860   A0A182IR73   A0A084VB39   A0A182NV77   A0A1B0GPF7   A0A1B6D1K8   A0A182REI8   A0A1Y1MFU5   A0A182W9J7   A0A182VA39   A0A182JQU3   A0A182P1X4   A0A0C9R9W9   A0A182I5R8   A0A0J7KPE3   A0A182X0H9   A0A3L8DLL9   A0A182TLK2   E9GI57   A0A0K8WFH3   A0A1Q3F1Q2   A0A182YIX3   Q7Q228   W5JH17   A0A1B0CJW4   A0A2R5L4P2   A0A0N7ZU02   A0A182FVV9   Q17MZ5   A0A1Z5LEV5   A0A034VGI6   A0A158NME1   A0A293N476   B3M095   B3P7P7   A0A182GZV0   A0A151WVT5   B4QSM5   Q9V9X7   B4PND9   Q5U1D1   A0A0P5FTG1   A0A2S2Q543   B4K8A8   A0A0M4EH56   B4LWZ5   B4JRX5   A0A2H8TFH0   A0A3B0JG66   Q29BB6   B4GYT7   W8AY65   A0A151I3B4   A0A131Y0A2   J9K8I5   A0A1W4U6A9   Q95RX7   V5HZY0   G3MKA0   A0A0A9VR83   A0A226ENF1   A0A224Z6D3   A0A131YY19   A0A0K8T125   A0A1J1J463   B4NG38   A0A131XRJ5   E2A908   A0A1I8N0E6   A0A0L0CRS2   A0A182T622   A0A1A9W827   A0A1B0BSJ6   A0A151J821   A0A1A9XVP9   A0A1I8NRH9   A0A1A9ZBN6   A0A195D744   A0A1B0G9B0   T1IQL5   E9J4F9   A0A1D1V9G5   A0A1A9V7M4   A0A2R7W850   A0A1A8DG69  

Pubmed

22118469    18362917    19820115    24845553    23537049    20075255    + More
28648823    24438588    28004739    30249741    21292972    25244985    12364791    20920257    23761445    17510324    28528879    25348373    21347285    17994087    26483478    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    24495485    25765539    22216098    25401762    26823975    28797301    26830274    28049606    20798317    25315136    26108605    21282665    27649274   

EMBL

ODYU01009033    SOQ53144.1    NWSH01000577    PCG75543.1    AGBW02000220    OWR55807.1    + More
KQ971351    EFA06447.1    KK853697    KDQ96253.1    APGK01045628    KB741037    KB632319    ENN74666.1    ERL92290.1    GECZ01012206    JAS57563.1    UFQT01000509    SSX24854.1    GDIP01050745    LRGB01000704    JAM52970.1    KZS16503.1    GDIP01159182    JAJ64220.1    GDIP01015966    JAM87749.1    GDIQ01220148    JAK31577.1    GDIP01217174    JAJ06228.1    NNAY01003564    OXU19193.1    AXCN02001805    ATLV01005272    ATLV01005273    KE524276    KFB35183.1    AJVK01033652    GEDC01017707    JAS19591.1    GEZM01036371    JAV82756.1    GBYB01002334    GBYB01013191    GBYB01013194    JAG72101.1    JAG82958.1    JAG82961.1    APCN01003489    LBMM01004732    KMQ92126.1    QOIP01000007    RLU20809.1    GL732546    EFX80827.1    GDHF01002545    JAI49769.1    GFDL01013561    JAV21484.1    AAAB01008979    EAA13718.3    ADMH02001521    ETN62205.1    AJWK01015482    GGLE01000358    MBY04484.1    GDIP01212721    JAJ10681.1    CH477203    EAT48007.1    GFJQ02001037    JAW05933.1    GAKP01017333    JAC41619.1    ADTU01020396    GFWV01023145    MAA47872.1    CH902617    EDV42052.1    CH954182    EDV52955.1    JXUM01100204    JXUM01100205    KQ564550    KXJ72097.1    KQ982701    KYQ51926.1    CM000364    EDX15122.1    AE014297    BT149874    AAF57151.2    AAN14273.1    ABW08815.2    ACZ95076.1    AFY63573.1    CM000160    EDW99221.1    KRK04733.1    BT015961    AAV36846.1    GDIQ01253829    JAJ97895.1    GGMS01003672    MBY72875.1    CH933806    EDW16490.1    CP012526    ALC47841.1    CH940650    EDW67742.1    CH916373    EDV94515.1    GFXV01000985    MBW12790.1    OUUW01000005    SPP81135.1    CM000070    EAL27082.1    CH479198    EDW27955.1    GAMC01015518    JAB91037.1    KQ976507    KYM82807.1    GEFM01002883    JAP72913.1    ABLF02031973    AY061061    AAL28609.1    GANP01004130    JAB80338.1    JO842301    AEO33918.1    GBHO01044672    GDHC01009054    JAF98931.1    JAQ09575.1    LNIX01000002    OXA59195.1    GFPF01010704    MAA21850.1    GEDV01005182    JAP83375.1    GBRD01006584    JAG59237.1    CVRI01000070    CRL07195.1    CH964251    EDW83255.1    GEFH01000410    JAP68171.1    GL437703    EFN70107.1    JRES01000007    KNC34911.1    JXJN01019747    KQ979602    KYN20516.1    KQ976750    KYN08710.1    CCAG010004370    JH431312    GL768105    EFZ12276.1    BDGG01000004    GAU98331.1    KK854443    PTY15892.1    HADZ01017124    HAEA01003958    SBQ32438.1   

Proteomes

UP000218220    UP000007151    UP000007266    UP000027135    UP000019118    UP000030742    + More
UP000076858    UP000002358    UP000215335    UP000075886    UP000075880    UP000030765    UP000075884    UP000092462    UP000075900    UP000075920    UP000075903    UP000075881    UP000075885    UP000075840    UP000036403    UP000076407    UP000279307    UP000075902    UP000000305    UP000076408    UP000007062    UP000000673    UP000092461    UP000069272    UP000008820    UP000005205    UP000007801    UP000008711    UP000069940    UP000249989    UP000075809    UP000000304    UP000000803    UP000002282    UP000009192    UP000092553    UP000008792    UP000001070    UP000268350    UP000001819    UP000008744    UP000078540    UP000007819    UP000192221    UP000198287    UP000183832    UP000007798    UP000000311    UP000095301    UP000037069    UP000075901    UP000091820    UP000092460    UP000078492    UP000092443    UP000095300    UP000092445    UP000078542    UP000092444    UP000186922    UP000078200   

PRIDE

Q9V9X7    Q5U1D1    Q95RX7    G3MKA0   

Pfam

PF03726   PNPase        + More
PF03725   RNase_PH_C
PF01138   RNase_PH
PF00013   KH_1
PF00575   S1
PF13393   tRNA-synt_His
PF12745   HGTP_anticodon2
PF03088   Str_synth

Interpro

IPR015848   PNPase_PH_RNA-bd_bac/org-type        + More
IPR003029   S1_domain       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR036345   ExoRNase_PH_dom2_sf       
IPR012162   PNPase       
IPR012340   NA-bd_OB-fold       
IPR001247   ExoRNase_PH_dom1       
IPR015847   ExoRNase_PH_dom2       
IPR036612   KH_dom_type_1_sf       
IPR027408   PNPase/RNase_PH_dom_sf       
IPR004087   KH_dom       
IPR036456   PNPase_PH_RNA-bd_sf       
IPR004088   KH_dom_type_1       
IPR022967   S1_dom       
IPR036621   Anticodon-bd_dom_sf       
IPR041715   HisRS-like_core       
IPR024435   HisRS-related_dom       
IPR011042   6-blade_b-propeller_TolB-like       
IPR018119   Strictosidine_synth_cons-reg       

SUPFAM

SSF55666   SSF55666        + More
SSF54211   SSF54211       
SSF54791   SSF54791       
SSF50249   SSF50249       
SSF46915   SSF46915       

Gene 3D

3.30.1370.10     3.30.230.70     3.40.50.800     2.120.10.30    

ProteinModelPortal

A0A2H1WL21   A0A2A4JVN5   A0A212FPY4   D6WRI0   A0A067QS60   N6U217   + More
A0A1B6G5H2   A0A336M3M1   A0A0P5Z0E1   A0A0P5EJ68   A0A0P6BFE1   A0A0P5IKB5   A0A0P4ZH66   K7IR75   A0A232ELF4   A0A182Q860   A0A182IR73   A0A084VB39   A0A182NV77   A0A1B0GPF7   A0A1B6D1K8   A0A182REI8   A0A1Y1MFU5   A0A182W9J7   A0A182VA39   A0A182JQU3   A0A182P1X4   A0A0C9R9W9   A0A182I5R8   A0A0J7KPE3   A0A182X0H9   A0A3L8DLL9   A0A182TLK2   E9GI57   A0A0K8WFH3   A0A1Q3F1Q2   A0A182YIX3   Q7Q228   W5JH17   A0A1B0CJW4   A0A2R5L4P2   A0A0N7ZU02   A0A182FVV9   Q17MZ5   A0A1Z5LEV5   A0A034VGI6   A0A158NME1   A0A293N476   B3M095   B3P7P7   A0A182GZV0   A0A151WVT5   B4QSM5   Q9V9X7   B4PND9   Q5U1D1   A0A0P5FTG1   A0A2S2Q543   B4K8A8   A0A0M4EH56   B4LWZ5   B4JRX5   A0A2H8TFH0   A0A3B0JG66   Q29BB6   B4GYT7   W8AY65   A0A151I3B4   A0A131Y0A2   J9K8I5   A0A1W4U6A9   Q95RX7   V5HZY0   G3MKA0   A0A0A9VR83   A0A226ENF1   A0A224Z6D3   A0A131YY19   A0A0K8T125   A0A1J1J463   B4NG38   A0A131XRJ5   E2A908   A0A1I8N0E6   A0A0L0CRS2   A0A182T622   A0A1A9W827   A0A1B0BSJ6   A0A151J821   A0A1A9XVP9   A0A1I8NRH9   A0A1A9ZBN6   A0A195D744   A0A1B0G9B0   T1IQL5   E9J4F9   A0A1D1V9G5   A0A1A9V7M4   A0A2R7W850   A0A1A8DG69  

PDB

5ZF6     E-value=0,     Score=1646

KEGG

101735544    K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] | (RefSeq) polyribonucleotide nucleoti

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0004654   GO:0003723   GO:0006396   GO:0006402   GO:0000957   GO:0000965   GO:0000963   GO:0005829   GO:0000958   GO:0005739   GO:0000175   GO:0006401   GO:0016787   GO:0044528   GO:0016301   GO:0003743   GO:0009058   GO:0016021   GO:0016844   GO:0003676   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

PANTHER

PTHR11252  

Length:

748

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.23394

Exp number, first 60 AAs:

0.09512

Total prob of N-in:

0.00732

outside

1  -  748

 

 

Pi

245.583652

Theta

168.919681

Tajima's D

1.083579

CLR

1.885112

CSRT

0.68101594920254

Interpretation

Uncertain