Gene

KWMTBOMO14998

Pre Gene Modal

BGIBMGA004874

Annotation

PREDICTED:_cell_growth_regulator_with_RING_finger_domain_protein_1-like_[Bombyx_mori]

Location

Bomo_Chr25(-):2018516-2020926      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.288 Mitochondrial   Reliability : 1.258

CDS

ATGTGCAAATGTGTTCGGGTGGAAAAAATGTTGTATCTTGTTGATTTATGGGCCTTCGTTTGGAAACAGCGAAGCGGTCCCCACGACGAGGGACCGATGAGGTTGTCGACAGTGGAGCCTCTACAACTAGGTCCTCCGCCGAGAACCTGCTACCCTCTAGTGGTAATTTTGGCGAGGGACCTTAAGGACATTGGAGAGCTGAGGCCCGACGACACGGTGGCGCTAGTAAGCGTGGTTCACATACGAGACGAACAGTGTCCGCTGCCGAGCGGCGTCATCGCTCAGTACCTCAAGCAGGCCAATGGTCATCTCTCGTGTTTGAAGATTCGTCTGCGCGGCTATGCCAATATCAAAGGTAAAGCAAACGTCACATAG

Protein

MCKCVRVEKMLYLVDLWAFVWKQRSGPHDEGPMRLSTVEPLQLGPPPRTCYPLVVILARDLKDIGELRPDDTVALVSVVHIRDEQCPLPSGVIAQYLKQANGHLSCLKIRLRGYANIKGKANVT

Uniprot

A0A194PLT5   V9IJH8   A0A088AM22   E0VWR7   A0A2A3EDK2   A0A0L7RIF3   + More
A0A154P671   A0A2R7WJ41   A0A195B4F9   A0A158NM39   A0A151JV04   A0A151IBP0   A0A3L8DIV9   A0A026W8V0   A0A151J0W1   E2C2U5   A0A2S2RB01   A0A151XHV4   A0A1Y1NKT2   A0A1L8DTF5   A0A1L8DT38   A0A139WF55   D6WSG8   A0A0T6B8N3   A0A182FQA6   A0A1S3HPK9   A0A1S3K0N4  

Pubmed

26354079    20566863    21347285    30249741    24508170    20798317    + More
28004739    18362917    19820115   

EMBL

KQ459604    KPI92065.1    JR048958    AEY60812.1    DS235824    EEB17823.1    + More
KZ288282    PBC29564.1    KQ414584    KOC70609.1    KQ434826    KZC07436.1    KK854914    PTY19636.1    KQ976604    KYM79383.1    ADTU01020221    ADTU01020222    ADTU01020223    KQ981730    KYN36605.1    KQ978079    KYM97164.1    QOIP01000007    RLU20380.1    KK107390    EZA51454.1    KQ980586    KYN15240.1    GL452203    EFN77780.1    GGMS01018018    MBY87221.1    KQ982109    KYQ59983.1    GEZM01001144    GEZM01001143    JAV98118.1    GFDF01004393    JAV09691.1    GFDF01004455    JAV09629.1    KQ971352    KYB26610.1    EFA06369.2    LJIG01009243    KRT83469.1   

Proteomes

UP000053268    UP000005203    UP000009046    UP000242457    UP000053825    UP000076502    + More
UP000078540    UP000005205    UP000078541    UP000078542    UP000279307    UP000053097    UP000078492    UP000008237    UP000075809    UP000007266    UP000069272    UP000085678   

Pfam

PF00271   Helicase_C        + More
PF08148   DSHCT
PF17911   Ski2_N
PF13234   rRNA_proc-arch
PF00270   DEAD

Interpro

IPR001841   Znf_RING        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR017066   E3ligase_BOI-like       
IPR001650   Helicase_C       
IPR040801   Ski2_N       
IPR014001   Helicase_ATP-bd       
IPR012961   Ski2_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR025696   rRNA_proc-arch_dom       
IPR027417   P-loop_NTPase       

SUPFAM

SSF52540   SSF52540       

Gene 3D

3.30.40.10    

CDD

cd00079  HELICc

ProteinModelPortal

A0A194PLT5   V9IJH8   A0A088AM22   E0VWR7   A0A2A3EDK2   A0A0L7RIF3   + More
A0A154P671   A0A2R7WJ41   A0A195B4F9   A0A158NM39   A0A151JV04   A0A151IBP0   A0A3L8DIV9   A0A026W8V0   A0A151J0W1   E2C2U5   A0A2S2RB01   A0A151XHV4   A0A1Y1NKT2   A0A1L8DTF5   A0A1L8DT38   A0A139WF55   D6WSG8   A0A0T6B8N3   A0A182FQA6   A0A1S3HPK9   A0A1S3K0N4  

KEGG

105842988    no KO assigned | (RefSeq) cell growth regulator with RING finger domain protein 1-like

GO

GO:0016021   GO:0005524   GO:0003676  

Length:

124

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00136

Exp number, first 60 AAs:

0.00136

Total prob of N-in:

0.63489

inside

1  -  124

 

 

Pi

189.853092

Theta

161.528051

Tajima's D

0.525487

CLR

0.016193

CSRT

0.512574371281436

Interpretation

Uncertain