SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14996
Pre Gene Modal
BGIBMGA004788
Annotation
PREDICTED:_intraflagellar_transport_protein_46_homolog_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.028
 

Sequence

CDS
ATGGCAACTAATGACAAACAGTCACAGACGGCCAGGACTCCTGAGAATGTTCCAATGTATGACGAGACCGTGGTGGTAGACGCTAGCGAGATCGACAGCCCCTCGAGCGACGAGGAAGTGGTCAGAGCTACTATGGCCAAGTTCAATCCCCCGGTGAGACACACAGCGCGACACGACTTCGATTCTGACAGTCAAAGCGATTCGGGATCTGACAACTTCTTGGGTAACACGTCCTTAGAAGATAAGGTACCAGACAAGAAGCCGCTTGTGCCCGAGAAAGCGAATGATGTCCAGAAAAACGTTACGAAGGTTACCAAGGCAGGCAGCGAGAGACCCAAAGCGTCCTCCAAACGTAATGATTCTTCTAATTCTGAAACAGATAGCGGAGAAATGGAACGCGAGCGACCCGACCCCCTGATAGGCAGCGGTCGCAAGCGAGGCGGCGTCGTGATACCAGCTGAAGGCGCGTACGATCCCAAGCTGTATCAGGATCTGAAGGTTCCGCCTGAAATGGAAAACATCTTTCAGTATATTATGAAGTGA
Protein
MATNDKQSQTARTPENVPMYDETVVVDASEIDSPSSDEEVVRATMAKFNPPVRHTARHDFDSDSQSDSGSDNFLGNTSLEDKVPDKKPLVPEKANDVQKNVTKVTKAGSERPKASSKRNDSSNSETDSGEMERERPDPLIGSGRKRGGVVIPAEGAYDPKLYQDLKVPPEMENIFQYIMK

Summary

Pfam
PF12317   IFT46_B_C        + More
PF05010   TACC_C
Interpro
IPR022088   Intraflagellar_transp_cmplxB        + More
IPR007707   TACC_C       

Ontologies

Topology

Length:
180
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.58053
inside
1  -  180
 
 

Population Genetic Test Statistics

Pi
193.158571
Theta
149.100816
Tajima's D
0.984226
CLR
0.172727
CSRT
0.655267236638168
Interpretation
Uncertain
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