Silkworm Genome Informatics Database

Gene

KWMTBOMO14993 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004786

Annotation

PREDICTED:_protein_sel-1_homolog_2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(+):1962627-1966951 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.906

CDS

ATGTATTTACCTATTGAATATTGTCGGTGTGGTCGTCCCGTGCAGCTGCTGAAGAGCGTGTGCGAGCGCGGGCGGTGGGGCGCGCGGCTGCAGGCGGCGCACGGCGCGTGGCGCGCGCACTCCCCGCACCGCGCCTTCCTGCAGTACGCCGCGCTGGCCGAGCGGGGCTACGAGGTCGCGCAGACCAACGCCGCCTACCTGCTCGACAACGGCGACGTCCGGCTGTTCCCGGAGGCGGAGCGCCACGTCCGCGCGCTGCAGCTGTGGGGCCGCGCCGCCACGCAGGGCTGCAGCGCCGCCAGGGTTAAGCTCGGGGACTACCATTACTACGGGCTCGGGACCCCACAGGATCTGGAGGCGGCCGCTCATCATTACAGGGTAGCATCAGAGCAGCTGCACAACGCGCAGGCGACCTTCAACCTGGGCTACATGCACGAGCGCGGCCTGGGACTAGCCAAGGACGCGCACCTCGCCAAGCGGTGCTACGACCTCGCCGCCGACACCGCGCCCGACGCCCGCCTCCCCGCCGCCCTCGCCCTCGCCGCCCTGCACACGCGCCTCGCGCTGCAGGACCTCGCCGCTGTACGTATGTCCCGCCACCGCACCCACACAGCGCTGCACGACCTCGCCGCCGACACCGCGCCCGACGCCCGCCTCCCCGCCGCCCTCGCCCTCGCCGCCCTGCACACGCGCCTCGCGCTGCAGGACCTCGCCGCTGTACGTATGTCCCGCCACCGCACCCACACAGCGCTGCACGACCTCGCCGCCGACACCGCGCCCGACGCCCGCCTCCCCGCCGCCCTCGCCCTCGCCGCCCTGCACACGCGCCTCGCGCTGCAGGACCTCGCCGCTGTACGTATGTCCCGCCACCGCACCCACACAGCGCTGCACGACCTCGCCGCCGACACCGCGCCCGACGCCCGCCTCCCCGCCGCCCTCGCCCTCGCCGCCCTGCACACGCGCCTCGCGCTGCAGGACCTCGCCGCTGTACGTATGTCCCGCCACCGCACCCACACAGCGCTGCACGACCTCGCCGCCGACACCGCGCCCGACGCCCGCCTCCCCGCCGCCCTCGCCCTCGCCGCCCTGCACACGCGCCTCGCGCTGCAGGACCTCGCCGCTGTACGTATGTCCCGCCACCGCACCCACACAGCGCTGCACGACCTCGCCGCCGACACCGCGCCCGACGCCCGCCTCCCCGCCGCCCTCGCCCTCGCCGCCCTGCACACGCGCCTCGCGCTGCAGGACCTCGCCGCTGTACGTATGTCCCGCCACCGCACCCACACAGCGCTGCACGACCTCGCCGCCGACACCGCGCCCGACGCCCGCCTCCCCGCCGCCCTCGCCCTCGCCGCCCTGCACACGCGCCTCGCGCTGCAGGACCTCGCCGCTGTACGTATGTCCCGCCACCGCACCCACACAGCGCTGCACGACCTCGCCGCCGACACCGCGCCCGACGCCCGCCTCCCCGCCGCCCTCGCCCTCGCCGCCCTGCACACGCGCCTCGCGCTGCAGGACCTCGCCGCTAGTCCACTCGCGATGATCTTCATAACCGGAGACGAGTCCGCTCTCCTGTACAACTGGGACCTGTACGTGATCACCACACTGCTCGGGATGCTGGGAGTGGTCATGTACATGAGGAGACCACAGCAGCAACAGCAACAGCAGCAGGCCGCGAATTAA

Protein

MYLPIEYCRCGRPVQLLKSVCERGRWGARLQAAHGAWRAHSPHRAFLQYAALAERGYEVAQTNAAYLLDNGDVRLFPEAERHVRALQLWGRAATQGCSAARVKLGDYHYYGLGTPQDLEAAAHHYRVASEQLHNAQATFNLGYMHERGLGLAKDAHLAKRCYDLAADTAPDARLPAALALAALHTRLALQDLAAVRMSRHRTHTALHDLAADTAPDARLPAALALAALHTRLALQDLAAVRMSRHRTHTALHDLAADTAPDARLPAALALAALHTRLALQDLAAVRMSRHRTHTALHDLAADTAPDARLPAALALAALHTRLALQDLAAVRMSRHRTHTALHDLAADTAPDARLPAALALAALHTRLALQDLAAVRMSRHRTHTALHDLAADTAPDARLPAALALAALHTRLALQDLAAVRMSRHRTHTALHDLAADTAPDARLPAALALAALHTRLALQDLAAVRMSRHRTHTALHDLAADTAPDARLPAALALAALHTRLALQDLAASPLAMIFITGDESALLYNWDLYVITTLLGMLGVVMYMRRPQQQQQQQQAAN

Uniprot

NA

ProteinModelPortal

NA

PDB

5V7V E-value=7.99615e-12, Score=171

KEGG

101736558 K14026 SEL1 protein | (RefSeq) protein sel-1 homolog 1

PATHWAY

04141 Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0005515 GO:0005737 GO:0004813 GO:0005524 GO:0006419 GO:0003676 GO:0007154 GO:0016020 GO:0005112 GO:0015930

Length:

560

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.99287

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00260

outside

1 - 523

TMhelix

524 - 546

inside

547 - 560

Pi

151.086066

Theta

138.418568

Tajima's D

0.710713

CLR

0

CSRT

0.584570771461427

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics