Silkworm Genome Informatics Database

Gene

KWMTBOMO14992 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004785

Annotation

PREDICTED:_protein_sel-1_homolog_2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(+):1951647-1961282 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.716

CDS

ATGGACCGCTACAAACTATTAGTGCTTGTTCTGTGTTTTTCGTTGACGACTACCGATCCCGTTGGACCCGAATCACGAAAGGACTCCGAGAAAAACGAAGAAGATGATGTCTCGAGTGAAGTTGAAGAAACGAAAGGGAAACCCGATTCAGAGTACATCAAAGAACTGACTGATGCTATGAATAAAGAGATACTGACGTTACAGGAGTATGCTGATGCTATGAAGAGTCAGTCGTCAAAAGATGAAACCAATAAAGAATCACACTTAGAACAAATGGCATATACTTTAAAGCTTTTACAGAAAAGTCTTAAGAAGCACTCTGAACCAACTTGGCTTCCTAACCAAAAAGCAGAACTGTCTGTAAATGAGAAATCACTAGAGGAGAATCCACAGGATATTCTGAACAGTCTACCACCATTACCAGAAGAGACAGAACCAGAATTAACTCCCGAATTAAAAGAAGCCAAAGAATTGTATGATGCTGCAGTAGCAAAACTAGATCGTCGAACTTTGGATGTCGATGCTTCCATCCTTCAGATCAAGCAGGCAGCCGAAGTCGGATATGTGCCGGCTAAGATCAAGCTAGCCTGGTCATATCTCTATGGGGAGGGGGTCGAAATAGATTTCGAAAAAGCTAAGAGCATATTTGAAGAGTTGGCAGCCGAAGGGAATGCTGATGCCCATGCGGGCATGGGCTTCTTATACGCAACAGGCATCGGAGTTCCAGTGTCGCAGGCAAAAGCCGTGGTGCATTACACTATTGGTGCGATAGGTGATAGCTCGTACGCACAGATGGCGCTGGCGTATCGATACTGGAGCGGTCACACGGTGCAGAGCTCATGTCCGAAAGCAATGGATCTATACATGAAGGTGGCTGCCAAAGTGGCAAGTAAAATGACATTGAACGGAGGCCCGGCCATACATCGCACGCGGCTCATCGACGAGGTGGAGGGCGGCGGCGGAGCCCTAGACACGGATCTCATCGAGTACTACCAGCTCCTCGCCGAGAAGGGTGATGTACAAGCACAGGTGGGTCTGGGGCAGTTACACTTCCAAGGAGGTCGCGGCGTGACCCTGGACATCAACAAAGCGTATCACTACTTCCAACAGGCGGCCAAGACGGGAAATGCTGTGGCGCACGCTTTCCTTGGAAAGATTTATTTAGAAGGCGGAGACGGCATAGTGGCAGACAACGACACGGCATTCAAGTACTTCAAGAAGGCGGCTGAACTGAACAACCCTGTGGGCCAAAGCGGACTAGGGTTGATGTATTTACAGGGCCGCGGCGTTCCCAAGGACACGACGGCCGCGTTCAAGTACTTCACGATGGCCGCCAACCAGGGCTGGGTCGAGGGGCAGTTCCATCTGGGCTTCATGTACTTCGGGGGCATCGGCGTGCGGCGCGACTTCAAGCAGGCCAACAAGTACTTCTCGCACGCGTCGCAGTCCGGCCACGTGCTGGCGCTGCACCAGCTCGCGCTCATGCACGCTCACGGGCTCGGCGTGCTCAAGTCCTGCACCACGGCCGTAGAGGTAACCGCGCTCAATATCCGCCGCGTGGCGCCCGGCCATTGA

Protein

MDRYKLLVLVLCFSLTTTDPVGPESRKDSEKNEEDDVSSEVEETKGKPDSEYIKELTDAMNKEILTLQEYADAMKSQSSKDETNKESHLEQMAYTLKLLQKSLKKHSEPTWLPNQKAELSVNEKSLEENPQDILNSLPPLPEETEPELTPELKEAKELYDAAVAKLDRRTLDVDASILQIKQAAEVGYVPAKIKLAWSYLYGEGVEIDFEKAKSIFEELAAEGNADAHAGMGFLYATGIGVPVSQAKAVVHYTIGAIGDSSYAQMALAYRYWSGHTVQSSCPKAMDLYMKVAAKVASKMTLNGGPAIHRTRLIDEVEGGGGALDTDLIEYYQLLAEKGDVQAQVGLGQLHFQGGRGVTLDINKAYHYFQQAAKTGNAVAHAFLGKIYLEGGDGIVADNDTAFKYFKKAAELNNPVGQSGLGLMYLQGRGVPKDTTAAFKYFTMAANQGWVEGQFHLGFMYFGGIGVRRDFKQANKYFSHASQSGHVLALHQLALMHAHGLGVLKSCTTAVEVTALNIRRVAPGH

Uniprot

H9J5J5 A0A2A4JTH2 A0A2W1BCB1 A0A3S2M8G3 A0A2H1WVI5 A0A212EV35 + More
A0A194RGN9 A0A194PFC9 A0A336K8F5

Pubmed

19121390 28756777 22118469 26354079

EMBL

BABH01025223 NWSH01000636 PCG75119.1 KZ150226 PZC72051.1 RSAL01000009 + More
RVE53863.1 ODYU01011378 SOQ57085.1 AGBW02012265 OWR45317.1 KQ460205 KPJ16983.1 KQ459604 KPI92071.1 UFQS01000014 UFQT01000014 SSW97320.1 SSX17706.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000053240 UP000053268 + More

PRIDE

H9J5J5

Pfam

PF08238 Sel1

Interpro

IPR011990 TPR-like_helical_dom_sf + More
IPR006597 Sel1-like

Gene 3D

1.25.40.10

ProteinModelPortal

H9J5J5 A0A2A4JTH2 A0A2W1BCB1 A0A3S2M8G3 A0A2H1WVI5 A0A212EV35 + More
A0A194RGN9 A0A194PFC9 A0A336K8F5

PDB

5B26 E-value=7.83415e-52, Score=516

KEGG

101736558 K14026 SEL1 protein | (RefSeq) protein sel-1 homolog 1

GO

GO:0016021 GO:0005515 GO:0005737 GO:0004813 GO:0005524 GO:0006419 GO:0003676 GO:0007154 GO:0016020 GO:0005112 GO:0015930

SignalP

Position: 1 - 18, Likelihood: 0.983203

Length:

524

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.0064

Exp number, first 60 AAs:

0.02614

Total prob of N-in:

0.00303

outside

1 - 524

Pi

251.054524

Theta

195.64351

Tajima's D

1.213489

CLR

0.487095

CSRT

0.713764311784411

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics