Silkworm Genome Informatics Database

Gene

KWMTBOMO14989

Pre Gene Modal

BGIBMGA004879

Annotation

PREDICTED:_transcription_termination_factor_2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(-):1896597-1922306 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.366

CDS

ATGATGGAGAACTCATTTTTTGAGTATCGTGACGAAACCGGAGTTGAAAGCGACTCTGATTACGAAGTAATCGACGACAGTTTAGTGGAACCGAAAGCTGTACTGAAGCAGGGAACAAACCGCACAGCATTCGTGCCCGAATCGGAAGAATCTTCCTCTGAAGATGATTCACAACAGGATCAACCTAAGCAAAAAAACTCCCAACGAAGCCTCAGAAAAAGTATTATCAATACTCATATCATATCTAGCAGTGATGATGATGGGAATCAAATCATCAAAACAACATCTCATAGTGAGGCAGCAGTTAGCTCTTCTGAGGAGGATGACGAAGAATACTCCCCTGAAATGTTGCCGCGCCGTCCGCAATCAATAAAAAAACCTACAGACCAAACTAATAGAGTTCAAGGTCTCAAGAATAAACGTATGATGTTTGATTCAGATTTAGACAATTCCATAACAGTTGAACACAACAGGCACCGGAAACAGATGTGCTTAAAAGATACGCCAATAAAAGTTGAAGATATAAAGAGGAAGTCTTTGCTAGATGACAGTATGCGAGACGCAAGCGGCTATGTGTCAAACGATAATTCAGATGGCGATAGTGCAGAAAAAGAGGACAGCAGTGATGAAACGAAATATGATAGTGATGGTGATGAACCTGTGTCCCGCCTAGATATAGAAGGACATAAGAGTAATAGTGAAAATAAACAAAGTAACGATGAGACTGTCAGTCATGATAAAACATTAGACAGCGATAGCCAAACACCTTCAAAGAACGACAGCATTCGATTCACTGCTAGAAAACTTAAGAATTGCAGACAGATTGTCAGCGATGAAAGCAGTTCTGAGACTGACGATGAACAAAAACAAGAAGTTGATGATCCCAAAAACGGATCTCATGGTAATAGTATAGATGATAAATCTAATTTAGATTTTGATGATAATGAGAAATGGAGCAGTAAAACTAGTGCCTGTGAAAGTGATTTAGATGGTCCAGACGAGTATGAGATGGCAGTTAGGCGTGCAACACGGAAGAGTATTATGGGCTTCATACCAAATGAAAATAATGATAGTGATGAATCTGACTGTATACAATCTGATGAGAGCCACCGGATATCAGGACATAGTGATGTGATGCAGGAAGAAAATCAAAACAATAAAGAAGGATCGCGTTCTGTGAAGACGCCAGAAAGAGACGGCGATAACTCTCGCCTCAGCTGTTCACCGATCAAAACCCCTTTGCATGACGTTACGAATGTCATTATCGAATCTGTCGAGAATTCACCCAGTGCTCCTAAAGGTCTCACGAATAAGGTTCAAAGTGAACTGGCGACCGAAGAAACAGGAAACAAGGAGAATTATATTAAGTACGACGACGACGTCACTATTGTTGATACTAAACCGGAAGTGATACAGTTGAGCAGTGATGATGAAGATGAGGTGAAAATCGAACACAAAACGTCTAACGTAAAAAAATCACCCAAAATCAAAAACGAAGCGGACAAGTCACCGAAAAAGTCCAGGGACAACACCATAAAGTCGTACCTGGTGCCGCCCAGCTACCCGAACCAAGGCGTCGTCTACGTCAAGAAAAGCATCCGGGAGAATGAGCTGTTCAAGTTAAATAGTTTGAAAGAGGATCTACATAATGTTAAGAGACTTCTGCAACAAGTGGAGGTGAACACGCTGCCGGACGGCGGAGTGAAGCTGATCGAGCGTCTCACCGGACTGGAGGCGGAGATCCGACGCCAGGGAGACAAGGTCGCCAACATGGTGGTCGAGCCTGAGAATCCAACAATAGAGGAAATAGCTAAAGATGGCTTCGAGAAGGGGCTCTCCTGGGAAGAGATACAGAAGGCCAGCATCGCCGTGCAGCCGCGGATGTTCGGCAAACAAGCCATGGCGAGCCACATGGCGGAGCGGAACCTCATCCTGGACCGGCTCCGAGACCTGCACGAGTCGCTGGCGTCCTGCCCGCCGGAGTCGCAGCTGGCCGCCCCGCCGCGCGGCCTGCGCTCCCAGCTCATGCCGCACCAGCTGCACGCGCTGGCCTGGCTGCACTGGAGGGAGACGCAGCGACCGGCGGCCGGAATACTAGCGGACGACATGGGTCTGGGCAAGACCATCACGATGATAGCGCTGATGGTCAGCGACAAGGAGAACAGCGCCGAGGATGACGACTCCGACGACGAGCGGCCCGGGGACAGCAGGTTGGTGCGCGGCGGCACGCTGGTGGTGTGCCCGGCGTCGCTGGTGCAGCAGTGGGCGGGCGAGGTGGAGAAGCACTGTGCGGGCGGGCGCCTCGCCGTGGCGCTGCACCACGGGCCCGCGCGCGCCCGCCACGCGCACCGCCTCGCCGCCGCCGACCTCGTGCTCACCACCTACAACATCCTGCAGCGGGACCACGACAAGGGCGTGCTGTTCCGCGTGCGCTGGCGGCGCGTGGTGCTGGACGAGGCGCACGCGGTCCGCAACCACAAGTCGGCCACGTGCCGCGCCGCCGCCGCGCTGCCCGCCGCGCGCCGCTGGGCGCTCTCCGGCACGCCCGTGCACAACAAGGACCTCGACCTCTTCGCGCTGCTGCAGTTCCTGCGCTGCTCGCCCTTCGACGACCTGTCCATGTGGAAGAAGTGGATCGACAACAAGAGCTTGGGAGGGCAGGAACGTTTAAGCACCATAATGCGTTGCTTACTTCTGCGGCGCACGAAGATGCAATTACAGCAGAAGGGACAGCTGGCGTGTCTCCCGCAGCGCCACACCCACGAGCAGCAAGTCACTCTCTCCAAGAACGAGATGAATGTTTACCAAAAGGTGCTGGTATTCTCGAAGACACTGTTCGCTCAGTTCCTCCACCAGCGCGCTGAGAAGAACTCTGAGCAGTTTGGTGCCCCTCTCCCCGACAAGGACTCGGAGTACGCGAAGATGCACAAGAGAATGATCGCCTTACAGGGTGCTAAACCGGTCAAGTCCCACGAGATCCTGGTCCTGTTGCTCCGTCTGCGGCAAGTGTGCTGCCACTGCGGACTCATAGCCGCCATGCTGGACGACGCCGCGCCCGACCTCGATGCGGACCCGGCCGGCAACGACTTGCTCGACGAACTCAACAAAATGTCGCTCGAGGACAGCCGGAAGGAGAGTTCGAAAGACGATGAAGATGAATCCGAAGGTGTCCAAGAGGAAGGCACCACGGCAGCCGAAGCCATAAGGTCTGTCCTGAGTCCGAACAATCCCGTGTTCGAACTAACCAGGCCTTCATCAAAGATCAACGCTGTCATGGAGTGTCTCAAAGAGAATGTATTTTCTAAGCCAGGTGAAAAGGCAGTGATCGTGTCACAATGGACAAGTGTTCTTCACTTGGTCGAGAAGCAGCTGTCAGCCATGGCGGTCCGCAGCGTGACGCTGAGCGGGAGCGTGCCGGTGACGGCCCGGCCCGCGCTCGTGCACGCCATCAACGACCACAACAGTGCCGTCAAGGTGATGCTGCTGTCGCTGTGCGCGGGGGGCGTGGGTTTGAACCTGTGCGGCGCCAACCACCTGTTCCTGCTGGACCCGCACTGGAACCCGCAGCTCGAGCAGCAGGCGCAGGACCGCGTCTACCGCGTCGGCCAAGATAAGACCGTGCACATTTACAGGTTCATGTGCGTGGACACCGTCGAGCAATCGATAAGGAAGCTGCAAGAAGCGAAGCTGGAGTTGGCCGACAACGTGCTCACGGGCGCTAAGAACACGAACGCTTCGAAACTCACCATCGAGGATCTCAAGATGCTTTTCAATATGGGGCAGCAGCAGTAG

Protein

MMENSFFEYRDETGVESDSDYEVIDDSLVEPKAVLKQGTNRTAFVPESEESSSEDDSQQDQPKQKNSQRSLRKSIINTHIISSSDDDGNQIIKTTSHSEAAVSSSEEDDEEYSPEMLPRRPQSIKKPTDQTNRVQGLKNKRMMFDSDLDNSITVEHNRHRKQMCLKDTPIKVEDIKRKSLLDDSMRDASGYVSNDNSDGDSAEKEDSSDETKYDSDGDEPVSRLDIEGHKSNSENKQSNDETVSHDKTLDSDSQTPSKNDSIRFTARKLKNCRQIVSDESSSETDDEQKQEVDDPKNGSHGNSIDDKSNLDFDDNEKWSSKTSACESDLDGPDEYEMAVRRATRKSIMGFIPNENNDSDESDCIQSDESHRISGHSDVMQEENQNNKEGSRSVKTPERDGDNSRLSCSPIKTPLHDVTNVIIESVENSPSAPKGLTNKVQSELATEETGNKENYIKYDDDVTIVDTKPEVIQLSSDDEDEVKIEHKTSNVKKSPKIKNEADKSPKKSRDNTIKSYLVPPSYPNQGVVYVKKSIRENELFKLNSLKEDLHNVKRLLQQVEVNTLPDGGVKLIERLTGLEAEIRRQGDKVANMVVEPENPTIEEIAKDGFEKGLSWEEIQKASIAVQPRMFGKQAMASHMAERNLILDRLRDLHESLASCPPESQLAAPPRGLRSQLMPHQLHALAWLHWRETQRPAAGILADDMGLGKTITMIALMVSDKENSAEDDDSDDERPGDSRLVRGGTLVVCPASLVQQWAGEVEKHCAGGRLAVALHHGPARARHAHRLAAADLVLTTYNILQRDHDKGVLFRVRWRRVVLDEAHAVRNHKSATCRAAAALPAARRWALSGTPVHNKDLDLFALLQFLRCSPFDDLSMWKKWIDNKSLGGQERLSTIMRCLLLRRTKMQLQQKGQLACLPQRHTHEQQVTLSKNEMNVYQKVLVFSKTLFAQFLHQRAEKNSEQFGAPLPDKDSEYAKMHKRMIALQGAKPVKSHEILVLLLRLRQVCCHCGLIAAMLDDAAPDLDADPAGNDLLDELNKMSLEDSRKESSKDDEDESEGVQEEGTTAAEAIRSVLSPNNPVFELTRPSSKINAVMECLKENVFSKPGEKAVIVSQWTSVLHLVEKQLSAMAVRSVTLSGSVPVTARPALVHAINDHNSAVKVMLLSLCAGGVGLNLCGANHLFLLDPHWNPQLEQQAQDRVYRVGQDKTVHIYRFMCVDTVEQSIRKLQEAKLELADNVLTGAKNTNASKLTIEDLKMLFNMGQQQ

Uniprot

H9J5T9 A0A2A4JUH4 A0A2H1V518 A0A212EV30 A0A2W1BFP7 A0A194PH95 + More
W8C3Q9 A0A1I8M2D2 A0A1I8NPA4 B4M500 A0A3B0K0J3 B4JSR7 A0A154PR97 E9J1L8

Pubmed

19121390 22118469 28756777 26354079 24495485 25315136 + More
17994087 21282665

EMBL

BABH01025226 BABH01025227 BABH01025228 BABH01025229 BABH01025230 NWSH01000636 + More
PCG75133.1 ODYU01000712 SOQ35940.1 AGBW02012265 OWR45314.1 KZ150226 PZC72047.1 KQ459604 KPI92079.1 GAMC01005959 JAC00597.1 CH940652 EDW59711.1 OUUW01000013 SPP87827.1 CH916373 EDV94807.1 KQ435078 KZC14429.1 GL767674 EFZ13240.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268 UP000095301 UP000095300 + More
UP000008792 UP000268350 UP000001070 UP000076502

PRIDE

H9J5T9

Pfam

PF00176 SNF2_N + More
PF00271 Helicase_C

Interpro

IPR038718   SNF2-like_sf        + More
IPR027417   P-loop_NTPase
IPR001650   Helicase_C
IPR014001   Helicase_ATP-bd
IPR000330   SNF2_N

SUPFAM

SSF52540 SSF52540

Gene 3D

3.40.50.10810

CDD

cd00079 HELICc

ProteinModelPortal

H9J5T9 A0A2A4JUH4 A0A2H1V518 A0A212EV30 A0A2W1BFP7 A0A194PH95 + More
W8C3Q9 A0A1I8M2D2 A0A1I8NPA4 B4M500 A0A3B0K0J3 B4JSR7 A0A154PR97 E9J1L8

PDB

1Z3I E-value=4.34918e-20, Score=246

KEGG

101741943 K15173 transcription termination factor 2 [EC:3.6.4.-] | (RefSeq) transcription termination factor 2

GO

GO:0005524 GO:0007283 GO:0006353 GO:0034454 GO:0008094 GO:0005737 GO:0005634 GO:0007143 GO:0000166 GO:0016787 GO:0030163 GO:0008138 GO:0035091 GO:0007154 GO:0016020 GO:0005112 GO:0015930

Length:

1263

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29525

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1263

Pi

262.344766

Theta

169.051265

Tajima's D

1.686962

CLR

0.338256

CSRT

0.826508674566272

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics