Gene

KWMTBOMO14983  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004884

Annotation

hypothetical_protein_KGM_22037_[Danaus_plexippus]

Location

Bomo_Chr25(-):1823942-1829196      View in EpiBrowser

Full name

Succinate dehydrogenase [ubiquinone] cytochrome b small subunit      

Location in the cell

PlasmaMembrane   Reliability : 4.13

CDS

ATGGCGTTCTCCATGTTTCTTCGTACATCAGGATGCCAAAGTCGAATGTTCACTCAACAAGCTATGAGGCTAGCGACCCAGCCAGCAATAACACAACGTATGATCTCCAGCTCATTGCCTGTTAGAAATATAATGAAGGATACTAAAACGACACCCATATTGAATGCTATTCGTTCATTCCGTACGTCTTGCGTGCGCCGGTCAGCGGAGAAGGTCGAGGACCACTCCAGGCTCTGGGTCATTGAGAGAGTGGTTTCTGCTGCACTGGTCCCATTGATTCCGTTAGCCCTCATGATGCCGAACAAACTATTCGACTCTCTCCTGGCGATACTGATCACCGCTCACAGTTTCTGGGGCCTGGAAGCGATCGCGGTCGACTACGTGCGCGCTAGTATATTTGGTCCTATTTTACCCAAAATTGCCATAGGCCTGGTGTATCTCATCTCCATTGCCACACTGGGAGGCTTGTTTTACATCATCAGCCACGATGTCGGCATCGCCAACGGCATCAGACAGTTCTGGGCCATCAAATCGGACGCACAGAAGTCATAA

Protein

MAFSMFLRTSGCQSRMFTQQAMRLATQPAITQRMISSSLPVRNIMKDTKTTPILNAIRSFRTSCVRRSAEKVEDHSRLWVIERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLEAIAVDYVRASIFGPILPKIAIGLVYLISIATLGGLFYIISHDVGIANGIRQFWAIKSDAQKS

Description

Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Similarity

Belongs to the CybS family.

Feature

chain  Succinate dehydrogenase [ubiquinone] cytochrome b small subunit

Uniprot

A0A212EUX9   A0A3S2M986   A0A194RI39   L0CRD8   S4P5H2   A0A1E1WR06   + More
A0A194PFD8   A0A2A4JSV9   A0A2W1BKQ6   A0A0L7KN38   A0A2H1WL42   A0A212FDM2   A0A034VUA1   A0A0A1XHK1   B3P8E4   A0A0K8WKU5   B4PNX5   Q1HR55   Q16SP7   A0A182H1A0   A0A067R7U5   A0A023EI85   A0A226EIG9   A0A0P4VVR8   A0A023EI91   A0A1I8QAZ5   A0A3B0JRP6   Q6XHN2   A0A023EGE8   D6WTA5   A0A0Q9WIL1   A0A1Q3FG07   B4M0F6   A0A1Q3FFN0   A0A1B6D8P8   E9GWY0   A0A1A9W2N4   A0A0K8TPB5   A0A2R7W2E2   A0A182PT43   A0A1J1HJY9   A0A2M4AHU1   A0A182Y7P4   A0A182K2H4   E0VV75   A0A170YAQ0   A0A182FIX8   A0A182WW66   A0A182W4F5   A0A182M7F2   A0A293LCA3   A0A182RPF9   A0A2R5LHM8   A0A1Y3BFJ2  

Pubmed

22118469    26354079    23550759    23622113    28756777    26227816    + More
25348373    25830018    17994087    17550304    17204158    17510324    26483478    24845553    24945155    27129103    14525923    18362917    19820115    21292972    26369729    25244985    20566863   

EMBL

AGBW02012265    OWR45308.1    RSAL01000009    RVE53855.1    KQ460205    KPJ16995.1    + More
JX870003    JX870004    JX870005    JX870006    JX870007    AGA19582.1    GAIX01008622    JAA83938.1    GDQN01001614    JAT89440.1    KQ459604    KPI92081.1    NWSH01000636    PCG75127.1    KZ150023    PZC74861.1    JTDY01008186    KOB64692.1    ODYU01009335    SOQ53686.1    AGBW02009011    OWR51875.1    GAKP01012046    GAKP01012044    JAC46906.1    GBXI01003855    JAD10437.1    CH954182    EDV53968.1    GDHF01000635    JAI51679.1    CM000160    EDW98185.1    DQ440239    CH478321    ABF18272.1    EAT33234.1    CH477669    EAT37500.1    JXUM01037208    JXUM01102818    KQ564754    KQ561121    KXJ71783.1    KXJ79642.1    KK852683    KDR18542.1    GAPW01004968    JAC08630.1    LNIX01000004    OXA56346.1    GDKW01000446    JAI56149.1    GAPW01004967    JAC08631.1    OUUW01000007    SPP83042.1    AY232151    AAR10174.1    GAPW01005171    JAC08427.1    KQ971352    EFA07507.1    CH940650    KRF83782.1    GFDL01008561    JAV26484.1    EDW68335.1    GFDL01008692    JAV26353.1    GEDC01015224    JAS22074.1    GL732571    EFX76036.1    GDAI01001617    JAI15986.1    KK854252    PTY13749.1    CVRI01000006    CRK88341.1    GGFK01006996    MBW40317.1    DS235804    EEB17281.1    GEMB01003486    JAR99729.1    AXCM01002197    GFWV01001603    MAA26333.1    GGLE01004880    MBY09006.1    MUJZ01022107    OTF79632.1   

Proteomes

UP000007151    UP000283053    UP000053240    UP000053268    UP000218220    UP000037510    + More
UP000008711    UP000002282    UP000008820    UP000069940    UP000249989    UP000027135    UP000198287    UP000095300    UP000268350    UP000007266    UP000008792    UP000000305    UP000091820    UP000075885    UP000183832    UP000076408    UP000075881    UP000009046    UP000069272    UP000076407    UP000075920    UP000075883    UP000075900   

Pfam

PF00595   PDZ

Interpro

IPR034804   SQR/QFR_C/D        + More
IPR007992   CybS       
IPR015482   Syntrophin       
IPR036034   PDZ_sf       
IPR001478   PDZ       

SUPFAM

SSF81343   SSF81343        + More
SSF50156   SSF50156       

Gene 3D

1.20.1300.10    

CDD

cd03496  SQR_TypeC_CybS

ProteinModelPortal

A0A212EUX9   A0A3S2M986   A0A194RI39   L0CRD8   S4P5H2   A0A1E1WR06   + More
A0A194PFD8   A0A2A4JSV9   A0A2W1BKQ6   A0A0L7KN38   A0A2H1WL42   A0A212FDM2   A0A034VUA1   A0A0A1XHK1   B3P8E4   A0A0K8WKU5   B4PNX5   Q1HR55   Q16SP7   A0A182H1A0   A0A067R7U5   A0A023EI85   A0A226EIG9   A0A0P4VVR8   A0A023EI91   A0A1I8QAZ5   A0A3B0JRP6   Q6XHN2   A0A023EGE8   D6WTA5   A0A0Q9WIL1   A0A1Q3FG07   B4M0F6   A0A1Q3FFN0   A0A1B6D8P8   E9GWY0   A0A1A9W2N4   A0A0K8TPB5   A0A2R7W2E2   A0A182PT43   A0A1J1HJY9   A0A2M4AHU1   A0A182Y7P4   A0A182K2H4   E0VV75   A0A170YAQ0   A0A182FIX8   A0A182WW66   A0A182W4F5   A0A182M7F2   A0A293LCA3   A0A182RPF9   A0A2R5LHM8   A0A1Y3BFJ2  

PDB

5C3J     E-value=2.47596e-11,     Score=161

KEGG

101737567    K00237 succinate dehydrogenase (ubiquinone) membrane anchor subunit | (RefSeq) putative succinate de

PATHWAY

00020    Citrate cycle (TCA cycle) - Bombyx mori (domestic silkworm)
00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0005743   GO:0046872   GO:0006099   GO:0005749   GO:0006121   GO:0020037   GO:0048039   GO:0005740   GO:0005198   GO:0016791   GO:0006470   GO:0008138   GO:0035091   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

PANTHER

PTHR13337   PTHR10554  

Subcellular location

Mitochondrion inner membrane  

Length:

183

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

48.06255

Exp number, first 60 AAs:

0.00748

Total prob of N-in:

0.74316

inside

1  -  102

TMhelix

103  -  125

outside

126  -  139

TMhelix

140  -  162

inside

163  -  183

 

 

Pi

279.64087

Theta

196.491009

Tajima's D

1.390927

CLR

0.168384

CSRT

0.760861956902155

Interpretation

Uncertain