Gene

KWMTBOMO14974

Pre Gene Modal

BGIBMGA000822

Annotation

PREDICTED:_exosome_complex_component_RRP46_[Amyelois_transitella]

Location

Bomo_Chr25(+):1252622-1257506      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.143

CDS

ATGGTGACTGATATGAAGGATGTACAGGATTTTAAATTAAAACCTATGAAATGTGAATTCAACTTCCTGAGCAAATCTGATGGATCAGCTATTTTATCACAAGGGGATACTGTATCATTGGTGAGCGTAAATGGACCTTTAGATATAAAGATGACCAGTCAACGAATAGATAAGTCAACTCTTGAGGTTTTGTTCAGTAATAAGAATGGGAAACCGAGCGTGGAAAACAGATACAAAGAGAATATAGTGAAACAGACATGTGAAGCAGCAATACTTGGTTCTCTGTATCCTAGAACTGGTATAAATGTTACTATACAGGAACTAGAAGATTATGGTGGTTTTCTAGCATGTACATTGAACTGTACTTGCCTAGCGTTGTTAAACTCTGGCGTTTCGATGCGGAATGTTTTCGCTGCAGTCAGCTGTGCGGTGGACAATCAAGGCAACGTCATTCTAGATCCGACGCATGCACAGCTACAGACTTCCACAGCCACGATGACGTTCGTGTTTGACAGCAGAGATAAGAGTTTGATTACTTGTTTTACTGATGGATGCTTCAGCCAAGACGCCTACAGAGAGGCGCTGGAGCGAAGCAGATCAGCCAGCGATCTCGTTTTCGCGTTCTACAGGGATATAATCAGGAAATATTGTAATGTCATTGGATAA

Protein

MVTDMKDVQDFKLKPMKCEFNFLSKSDGSAILSQGDTVSLVSVNGPLDIKMTSQRIDKSTLEVLFSNKNGKPSVENRYKENIVKQTCEAAILGSLYPRTGINVTIQELEDYGGFLACTLNCTCLALLNSGVSMRNVFAAVSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLITCFTDGCFSQDAYREALERSRSASDLVFAFYRDIIRKYCNVIG

Uniprot

A0A2W1BKR6   A0A2A4JGM9   A0A194PGD9   S4PB76   A0A194RLZ5   A0A212F6D2   + More
A0A2H1VNH1   A0A1B6KD59   A0A1B6FIE5   A0A1B6JG49   A0A0L0C6S6   A0A088AB49   A0A1I8M6Y9   A0A1B6CIX3   A0A232EJK1   K7JNZ8   A0A1I8P356   A0A0C9S0M5   A0A2A3ERR9   A0A154P3L9   A0A1L8DXW4   A0A336KFE4   A0A1A9WB24   W8BW53   E9IM33   F4WYR8   A0A151J9C0   A0A0K8WLV5   A0A1A9VSM6   E2A4C9   B0XFZ4   V4CN34   U5EGR2   A0A1Q3F430   A0A034WB72   A0A182G214   C3ZLS8   V9L7Y9   A0A195F9D7   A0A1A9ZM92   A0A026W7A6   Q174Q5   D3TR50   A0A158NC52   A0A0L8FWW3   A0A195CMN8   A0A2P8XIG9   K1RHF5   G1T1E5   A0A067RN81   A0A0L7QYA9   A0A1J1J3X2   A0A2J7QI43   A0A286XM09   A0A0P6JG23   A0A0P4WKU0   A0A151I352   A0A151XCU0   A0A0N0BI12   A0A091DRE2   E1BAG2   W5PBY8   A0A0B6YE14   A0A1S3H3Z7   A0A2K5PER7   F6PGH0   S9WM98   W5UBH2   A0A3Q3M2Z8   A0A3Q3A8H6   R7TMD1   Q4KLC7   A0A3Q2DYG1   A0A3B4X0Y4   A0A0S7IU02   A0A3B4T2Z2   L8YB56   A0A3Q3VX05   A0A1L8F8Y2   A0A2Y9I2M2   B4N8W7   A0A3B5LZD8   A0A3P9MG84   A0A1A8H665   A0A1A8CA96   A0A1A8P3K8   A0A1A8JQU5   A0A1A8UGH2   A0A3B3XSG9   A0A3B3CQ24   A0A3B3TU15   A0A3B4ENF5   A0A3Q3DKG4   A0A3B5AUU8   A0A2U9B4C4   A0A3Q1HY75   A0A3Q4GFS0   A0A146NND7   A0A3B3HL18   A0A1A8MXJ8  

Pubmed

28756777    26354079    23622113    22118469    26108605    25315136    + More
28648823    20075255    24495485    21282665    21719571    20798317    23254933    25348373    26483478    18563158    24402279    24508170    30249741    17510324    20353571    21347285    29403074    22992520    21993624    24845553    19393038    20809919    17495919    23149746    23127152    23385571    27762356    17994087    17554307    29451363    25186727   

EMBL

KZ150023    PZC74871.1    NWSH01001601    PCG70744.1    KQ459604    KPI92093.1    + More
GAIX01006062    JAA86498.1    KQ460205    KPJ17006.1    AGBW02010046    OWR49296.1    ODYU01003508    SOQ42385.1    GEBQ01030632    JAT09345.1    GECZ01019819    JAS49950.1    GECU01036016    GECU01011921    GECU01011388    GECU01009516    JAS71690.1    JAS95785.1    JAS96318.1    JAS98190.1    JRES01000835    KNC27937.1    GEDC01023909    JAS13389.1    NNAY01004009    OXU18502.1    GBYB01014131    JAG83898.1    KZ288194    PBC33819.1    KQ434809    KZC06535.1    GFDF01002796    JAV11288.1    UFQS01000362    UFQT01000362    SSX03169.1    SSX23535.1    GAMC01013126    JAB93429.1    GL764129    EFZ18472.1    GL888463    EGI60572.1    KQ979425    KYN21617.1    GDHF01000275    JAI52039.1    GL436635    EFN71676.1    DS232974    EDS27152.1    KB199905    ESP03795.1    GANO01003339    JAB56532.1    GFDL01012734    JAV22311.1    GAKP01007914    JAC51038.1    JXUM01138256    KQ568707    KXJ68907.1    GG666642    EEN46551.1    JW874984    AFP07501.1    KQ981727    KYN37215.1    KK107366    QOIP01000014    EZA51873.1    RLU15130.1    CH477407    EAT41543.1    EZ423902    ADD20178.1    ADTU01011562    KQ425619    KOF69221.1    KQ977565    KYN01973.1    PYGN01002018    PSN31799.1    JH817465    EKC43209.1    KK852526    KDR22065.1    KQ414694    KOC63554.1    CVRI01000066    CRL06150.1    NEVH01013960    PNF28246.1    AAKN02054853    GEBF01000292    JAO03341.1    GDRN01064942    JAI64755.1    KQ976508    KYM82747.1    KQ982298    KYQ58130.1    KQ435736    KOX76988.1    KN122065    KFO33652.1    AMGL01028955    HACG01007548    CEK54413.1    KB017481    EPY77328.1    JT410904    AHH39225.1    AMQN01013425    KB310211    ELT92240.1    BC099290    AAH99290.1    GBYX01425589    JAO55659.1    KB364659    ELV12200.1    CM004480    OCT68051.1    CH964232    EDW80472.1    HAEB01001064    HAEC01010717    SBQ78933.1    HADZ01012861    HAEA01006897    SBP76802.1    HAEH01005180    HAEI01010771    SBR75843.1    HAED01006122    HAEE01002455    SBR22475.1    HADY01006102    HAEJ01005945    SBS46402.1    CP026245    AWO98601.1    GCES01153357    JAQ32965.1    HAEF01020188    SBR61347.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000037069    UP000005203    + More
UP000095301    UP000215335    UP000002358    UP000095300    UP000242457    UP000076502    UP000091820    UP000007755    UP000078492    UP000078200    UP000000311    UP000002320    UP000030746    UP000069940    UP000249989    UP000001554    UP000078541    UP000092445    UP000053097    UP000279307    UP000008820    UP000005205    UP000053454    UP000078542    UP000245037    UP000005408    UP000001811    UP000027135    UP000053825    UP000183832    UP000235965    UP000005447    UP000078540    UP000075809    UP000053105    UP000028990    UP000009136    UP000002356    UP000085678    UP000233040    UP000002280    UP000221080    UP000261640    UP000264800    UP000014760    UP000265020    UP000261360    UP000261420    UP000011518    UP000261620    UP000186698    UP000248481    UP000007798    UP000261380    UP000265180    UP000261480    UP000261560    UP000261500    UP000261440    UP000264820    UP000261400    UP000246464    UP000265040    UP000261580    UP000001038   

Pfam

PF01138   RNase_PH        + More
PF03725   RNase_PH_C

Interpro

IPR027408   PNPase/RNase_PH_dom_sf        + More
IPR001247   ExoRNase_PH_dom1       
IPR036345   ExoRNase_PH_dom2_sf       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR015847   ExoRNase_PH_dom2       

SUPFAM

SSF54211   SSF54211        + More
SSF55666   SSF55666       

Gene 3D

3.30.230.70    

ProteinModelPortal

A0A2W1BKR6   A0A2A4JGM9   A0A194PGD9   S4PB76   A0A194RLZ5   A0A212F6D2   + More
A0A2H1VNH1   A0A1B6KD59   A0A1B6FIE5   A0A1B6JG49   A0A0L0C6S6   A0A088AB49   A0A1I8M6Y9   A0A1B6CIX3   A0A232EJK1   K7JNZ8   A0A1I8P356   A0A0C9S0M5   A0A2A3ERR9   A0A154P3L9   A0A1L8DXW4   A0A336KFE4   A0A1A9WB24   W8BW53   E9IM33   F4WYR8   A0A151J9C0   A0A0K8WLV5   A0A1A9VSM6   E2A4C9   B0XFZ4   V4CN34   U5EGR2   A0A1Q3F430   A0A034WB72   A0A182G214   C3ZLS8   V9L7Y9   A0A195F9D7   A0A1A9ZM92   A0A026W7A6   Q174Q5   D3TR50   A0A158NC52   A0A0L8FWW3   A0A195CMN8   A0A2P8XIG9   K1RHF5   G1T1E5   A0A067RN81   A0A0L7QYA9   A0A1J1J3X2   A0A2J7QI43   A0A286XM09   A0A0P6JG23   A0A0P4WKU0   A0A151I352   A0A151XCU0   A0A0N0BI12   A0A091DRE2   E1BAG2   W5PBY8   A0A0B6YE14   A0A1S3H3Z7   A0A2K5PER7   F6PGH0   S9WM98   W5UBH2   A0A3Q3M2Z8   A0A3Q3A8H6   R7TMD1   Q4KLC7   A0A3Q2DYG1   A0A3B4X0Y4   A0A0S7IU02   A0A3B4T2Z2   L8YB56   A0A3Q3VX05   A0A1L8F8Y2   A0A2Y9I2M2   B4N8W7   A0A3B5LZD8   A0A3P9MG84   A0A1A8H665   A0A1A8CA96   A0A1A8P3K8   A0A1A8JQU5   A0A1A8UGH2   A0A3B3XSG9   A0A3B3CQ24   A0A3B3TU15   A0A3B4ENF5   A0A3Q3DKG4   A0A3B5AUU8   A0A2U9B4C4   A0A3Q1HY75   A0A3Q4GFS0   A0A146NND7   A0A3B3HL18   A0A1A8MXJ8  

PDB

6H25     E-value=7.6131e-35,     Score=365

KEGG

101736615    K12590 exosome complex component RRP46 | (RefSeq) exosome complex component RRP46

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0004527   GO:0005730   GO:0000177   GO:0034475   GO:0016075   GO:0071051   GO:0000176   GO:0034427   GO:0071028   GO:0035327   GO:0051607   GO:0043928   GO:0000178   GO:0045006   GO:0010468   GO:0005737  

Length:

221

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.648549999999999

Exp number, first 60 AAs:

0.00891

Total prob of N-in:

0.22342

outside

1  -  221

 

 

Pi

184.923879

Theta

134.086085

Tajima's D

1.012803

CLR

0.44634

CSRT

0.665666716664167

Interpretation

Uncertain