Gene

KWMTBOMO14971

Pre Gene Modal

BGIBMGA000821

Annotation

PREDICTED:_radial_spoke_head_protein_6_homolog_A_[Bombyx_mori]

Location

Bomo_Chr25(+):1231542-1233139      View in EpiBrowser

Full name

Radial spoke head protein 6 homolog A      

Alternative Name

Radial spoke head-like protein 1

Location in the cell

Mitochondrial   Reliability : 1.22

CDS

ATGACGGCGTGGAGTGTCCGCAGCAGTTCGTCGCTGACGCCGGAGCGAGCGGTCGCCGCGCTCAGGAGCAACCTGTGGCCCGGAGCCGCCGCCTTCGCCACGTCCGGACAAAAGTCTGAATGTATGTACATCGGTTGGGGCTTGAAGTTCGATCCGCCGAACTACGGGCCGGCTCAGTTGCCGCGGCCGCAAGACGAGTACCCCATCGGGCCGGAGGTCATGGAGATGGCGGACCCCACCTTCGCCGACGAAGAGTGA

Protein

MTAWSVRSSSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWGLKFDPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEE

Similarity

Belongs to the flagellar radial spoke RSP4/6 family.

Keywords

Complete proteome   Polymorphism   Reference proteome  

Feature

chain  Radial spoke head protein 6 homolog A
sequence variant  In dbSNP:rs12459916.

Uniprot

H9IU91   A0A2H1VJ98   A0A2A4JFB4   A0A212F6E7   A0A194RGR4   A0A194PLW4   + More
A0A3S2N5C8   A0A3Q0E911   A0A3B3DQJ7   A0A3B3CBJ3   A0A287AGL6   A0A3P9J4C6   A0A1S3GH53   L5KPB7   A0A2U3Z4J1   A0A1Y1N7H9   A0A151I2R2   A0A3P9KUY4   A0A151J996   A0A2K6EXC9   A0A2K5UMD7   G7NMZ3   A0A2K5ZND9   A0A1W4WQT0   A0A0A0MX28   A0A2K5LN59   A0A0D9S235   A0A2K6N5Q3   A0A1U7RFT8   A0A195FA12   A0A2K5J5W2   A0A3Q3W4B8   A0A2K6QL33   A0A3Q7TXI3   A0A2K6DHE5   A0A2Y9EJF9   A0A2J8U6Q0   E2RJH9   A0A383YZZ7   M0R103   A0A091CN90   L5LUI7   A0A151XCQ9   U6CQL0   H0WDN9   A0A3L7H5C2   A0A1U7RD98   G3QLI9   H0X964   A0A2K5QMD4   H2NZ98   A0A212DCP2   G1QPH1   A0A2J8U6P3   A0A158NCR3   B9EGB4   Q9H0K4   A0A2J8K199   D6WQE3   A0A341DC29   A0A1S3AB13   M3XDJ2   A0A2U4BBK5   A0A3Q3IR29   A0A3B4CIL2   A0A3B4CIE9   A0A3L8D4R2   A0A026W6Y8   A0A2K5C5H4   A0A0L7KQL0   S7MRH7   G9KM08   Q99MM9   A0A1A6GF39   A0A3Q1MNM0   A0A2Y9DVL3   A0A2R9CLD0   A0A088A5U1   H2QGM0   G2HHW4   A0A154P3P6   A0A2K5WPN8   L8IM98   A0A2Y9GCV5   B2RQM5   Q8CDR2   E1BJG2   M3X9Z3   A0A2U3VZV6   A0A3Q7NPN0   I3LYQ8   A0A2Y9P1V0   A0A1B6IWW3   A0A2K5WPM6   A0A3Q7VQM2   A0A340XAZ0   E2A4D0   M3Y2E1   G5AUY1   A0A384C3I9  

Pubmed

19121390    22118469    26354079    29451363    17554307    23258410    + More
28004739    22002653    25362486    16341006    15057824    21993624    29704459    22398555    29294181    21347285    15489334    11230166    18362917    19820115    17975172    30249741    24508170    26227816    23236062    11237735    19468303    21183079    19393038    22722832    16136131    21484476    22751099    12040188    16141072    20798317    21993625   

EMBL

BABH01034251    BABH01034252    BABH01034253    BABH01034254    ODYU01002874    SOQ40898.1    + More
NWSH01001601    PCG70747.1    AGBW02010046    OWR49294.1    KQ460205    KPJ17008.1    KQ459604    KPI92095.1    CM012440    RVE73844.1    AEMK02000041    KB030659    ELK12771.1    GEZM01014119    JAV92196.1    KQ976508    KYM82746.1    KQ979425    KYN21616.1    CM001271    EHH30163.1    AHZZ02014536    AHZZ02014537    AQIB01135878    AQIB01135879    AQIB01135880    AQIB01135881    AQIB01135882    AQIB01135883    KQ981727    KYN37216.1    NDHI03003467    PNJ40947.1    AAEX03000871    AC011530    AC092301    KN125239    KFO18968.1    KB107801    ELK29685.1    KQ982298    KYQ58129.1    HAAF01001084    CCP72910.1    AAKN02048247    RAZU01000277    RLQ61075.1    CABD030113976    CABD030113977    CABD030113978    CABD030113979    CABD030113980    CABD030113981    AAQR03153742    AAQR03153743    AAQR03153744    ABGA01243161    ABGA01243162    ABGA01243163    ABGA01243164    ABGA01243165    ABGA01243166    ABGA01243167    ABGA01243168    ABGA01243169    ABGA01243170    MKHE01000004    OWK15999.1    ADFV01102050    ADFV01102051    ADFV01102052    ADFV01102053    ADFV01102054    PNJ40946.1    ADTU01011560    ADTU01011561    BC136351    BC136352    AAI36352.1    AL136761    AK223347    CH471126    BC057785    NBAG03000399    PNI28779.1    KQ971354    EFA06085.1    AANG04000747    QOIP01000014    RLU15131.1    KK107366    EZA51872.1    JTDY01007182    KOB65400.1    KE161938    EPQ05995.1    JP017339    AES05937.1    AC170864    AF329191    AAK19322.1    LZPO01097126    OBS64846.1    AJFE02059353    AJFE02059354    AJFE02059355    AJFE02059356    AJFE02059357    AJFE02059358    AJFE02059359    AACZ04019599    PNI28778.1    AK306328    BAK63322.1    KQ434809    KZC06536.1    AQIA01049552    JH880960    ELR57665.1    BC137992    CH466639    AAI37993.1    EDL23102.1    AF329192    AK029699    AANG04000169    AGTP01097034    GECU01016366    JAS91340.1    GL436635    EFN71677.1    AEYP01068395    AEYP01068396    AEYP01068397    JH167046    EHB00842.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000189704    + More
UP000261560    UP000008227    UP000265200    UP000081671    UP000010552    UP000245341    UP000078540    UP000265180    UP000078492    UP000233160    UP000233100    UP000233140    UP000192223    UP000028761    UP000233060    UP000029965    UP000233180    UP000189706    UP000078541    UP000233080    UP000261620    UP000233200    UP000286640    UP000233120    UP000248484    UP000002254    UP000261681    UP000005640    UP000028990    UP000075809    UP000005447    UP000273346    UP000001519    UP000005225    UP000233040    UP000001595    UP000001073    UP000005205    UP000007266    UP000252040    UP000079721    UP000011712    UP000245320    UP000261600    UP000261440    UP000279307    UP000053097    UP000233020    UP000037510    UP000000589    UP000092124    UP000009136    UP000248480    UP000240080    UP000005203    UP000002277    UP000076502    UP000248481    UP000245340    UP000286641    UP000005215    UP000248483    UP000286642    UP000265300    UP000000311    UP000000715    UP000006813    UP000261680   

PRIDE

H9IU91    M0R103    Q9H0K4    Q8CDR2   

Pfam

PF04712   Radial_spoke        + More
PF12295   Symplekin_C

Interpro

IPR006802   Radial_spoke        + More
IPR016024   ARM-type_fold       
IPR022075   Symplekin_C       

SUPFAM

SSF48371   SSF48371       

ProteinModelPortal

H9IU91   A0A2H1VJ98   A0A2A4JFB4   A0A212F6E7   A0A194RGR4   A0A194PLW4   + More
A0A3S2N5C8   A0A3Q0E911   A0A3B3DQJ7   A0A3B3CBJ3   A0A287AGL6   A0A3P9J4C6   A0A1S3GH53   L5KPB7   A0A2U3Z4J1   A0A1Y1N7H9   A0A151I2R2   A0A3P9KUY4   A0A151J996   A0A2K6EXC9   A0A2K5UMD7   G7NMZ3   A0A2K5ZND9   A0A1W4WQT0   A0A0A0MX28   A0A2K5LN59   A0A0D9S235   A0A2K6N5Q3   A0A1U7RFT8   A0A195FA12   A0A2K5J5W2   A0A3Q3W4B8   A0A2K6QL33   A0A3Q7TXI3   A0A2K6DHE5   A0A2Y9EJF9   A0A2J8U6Q0   E2RJH9   A0A383YZZ7   M0R103   A0A091CN90   L5LUI7   A0A151XCQ9   U6CQL0   H0WDN9   A0A3L7H5C2   A0A1U7RD98   G3QLI9   H0X964   A0A2K5QMD4   H2NZ98   A0A212DCP2   G1QPH1   A0A2J8U6P3   A0A158NCR3   B9EGB4   Q9H0K4   A0A2J8K199   D6WQE3   A0A341DC29   A0A1S3AB13   M3XDJ2   A0A2U4BBK5   A0A3Q3IR29   A0A3B4CIL2   A0A3B4CIE9   A0A3L8D4R2   A0A026W6Y8   A0A2K5C5H4   A0A0L7KQL0   S7MRH7   G9KM08   Q99MM9   A0A1A6GF39   A0A3Q1MNM0   A0A2Y9DVL3   A0A2R9CLD0   A0A088A5U1   H2QGM0   G2HHW4   A0A154P3P6   A0A2K5WPN8   L8IM98   A0A2Y9GCV5   B2RQM5   Q8CDR2   E1BJG2   M3X9Z3   A0A2U3VZV6   A0A3Q7NPN0   I3LYQ8   A0A2Y9P1V0   A0A1B6IWW3   A0A2K5WPM6   A0A3Q7VQM2   A0A340XAZ0   E2A4D0   M3Y2E1   G5AUY1   A0A384C3I9  

KEGG

101740053    no KO assigned | (RefSeq) radial spoke head protein 6 homolog A

GO

GO:0005622   GO:0005929   GO:0005930   GO:0003341   GO:0005654   GO:0005730   GO:0035082   GO:0001534   GO:0060271   GO:0060294  

PANTHER

PTHR13159  

Length:

85

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01857

Exp number, first 60 AAs:

0.01857

Total prob of N-in:

0.40058

outside

1  -  85

 

 

Pi

190.954619

Theta

142.25153

Tajima's D

1.201083

CLR

0.435451

CSRT

0.715914204289785

Interpretation

Uncertain