Gene

KWMTBOMO14970

Pre Gene Modal

BGIBMGA000821

Annotation

PREDICTED:_radial_spoke_head_protein_6_homolog_A_[Bombyx_mori]

Location

Bomo_Chr25(+):1228642-1230724      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.96

CDS

ATGTTGTGTTACCTTAGCGAACAGTGGATCTGTCTCCCGGATGTAACTCCTGATCAGATCAGAGTGGCCCGCCTCACTGTGCGTTGTATGACCGGAAATCTAGATGCTGAGGTTCAATCGTTTCCGCCGTTTGAGGGAACAGAGCGGAATTATCTGCGCGCTCAACTAGCTCGGATCCAAGCCGGCACGTCCGTGTCTCCTCAGGGCTTCTACACTTTTGGTTCTGGTGAAGAAGAAGATATTGATTTGGAGGAAGGCGGGGGAGATTTAAATTTCAACCCCAATCCGTTTTACCACGGCCACTCGATGAAGGACCTGCTGGACTCGAGCCTCACGTACTGGGTGCATCATGGACGACATATACTGAAACAGGGTAGGACTCTCTGGTGGAATCCTAATGCTGGAATGGAGTTTCTGTACTCTAGAACGGCTATGAGTAAGAAAATAACCTATGCCAAGCCACTAGCGAGGCAGTTAGAGAAGGCAGCGTCAATAATTATGGAGGAAGAAGAAGCACAATGCCGGAAATAA

Protein

MLCYLSEQWICLPDVTPDQIRVARLTVRCMTGNLDAEVQSFPPFEGTERNYLRAQLARIQAGTSVSPQGFYTFGSGEEEDIDLEEGGGDLNFNPNPFYHGHSMKDLLDSSLTYWVHHGRHILKQGRTLWWNPNAGMEFLYSRTAMSKKITYAKPLARQLEKAASIIMEEEEAQCRK

Uniprot

A0A212F6E7   A0A2W1B7R5   A0A2A4JFB4   A0A194RHU4   A0A194PLW4   A0A2H1VJ98   + More
A0A154P3P6   A0A0L7KW62   E0W087   D6WQE3   A0A158NCR3   A0A075AJR4   A0A1S8WLA3   A0A151I2R2   A0A310SUH3   A0A183B2V7   A0A3R7GRT6   A0A151XCQ9   E2A4D0   G7Y5T9   A0A151J996   A0A0L7QY67   H2KRA8   A0A1W4WQT0   F4WYR7   A0A3Q0KGB2   A0A1I8HZC7   A0A1I8GZ50   A0A1I8FY27   G4V5J5   A0A074YZD8   A0A088A5U1   A0A195CPE1   A0A183LKS7   A0A2A3EIV7   A0A183NYC3   A0A183K5E4   E4X3B0   T1F7C2   A0A3L8D4R2   A0A1I8INK1   H3BAM5   A0A026W6Y8   A0A095B2K7   A0A0B7B924   E9IM35   A0A0B7B639   A0A0N0BDF6   A0A3S1ASK2   O46178   W4YGB6   V4ABQ0   A0A0B7B9S3   A0A2G8JST0   R7UDR4   H2ZH03   A0A2Y9DDF4   A0A1S3D3V4   A0A2C9K7T3   A0A1B6K2V7   C4B8X4   A0A341CEV0   A0A093R2Y8   S7MG66   F7FU36   C3ZMT5   A0A091JCA6   A0A1W3JEG2   G1SY17   A0A183LJ54   A0A183K760   G1PTD3   U3KPB6   A0A095A255   A0A183RP67   A0A093J9S8   A0A2U3XT83   A0A3Q7SRB7   A0A2F0BCW9   A0A1S3IY04   G4VCB4   A0A087QR25   A0A091WAZ0   A0A2U3V606   A0A1S3I1H4   M3X9Z3   A0A3Q0KMB6   F6UPL6   A0A3M6UUI2   F6Q808   H0UU47   A0A340X040   A0A2Y9FD02   A0A287D6C0   A0A2U3ZDC7   G5AMZ9  

Pubmed

22118469    28756777    26354079    26227816    20566863    18362917    + More
19820115    21347285    20798317    22023798    21719571    22253936    26392545    21097902    23254933    30249741    9215903    24508170    22246508    21282665    9450971    29023486    15562597    12481130    15114417    19527718    18464734    18563158    21993624    17975172    16341006    30382153    19892987    21993625   

EMBL

AGBW02010046    OWR49294.1    KZ150248    PZC71842.1    NWSH01001601    PCG70747.1    + More
KQ460205    KPJ17009.1    KQ459604    KPI92095.1    ODYU01002874    SOQ40898.1    KQ434809    KZC06536.1    JTDY01005195    KOB67269.1    DS235857    EEB19043.1    KQ971354    EFA06085.1    ADTU01011560    ADTU01011561    KL596621    KER33839.1    KV906164    OON15227.1    KQ976508    KYM82746.1    KQ760329    OAD60867.1    UZAN01055346    VDP90814.1    NIRI01002532    RJW60925.1    KQ982298    KYQ58129.1    GL436635    EFN71677.1    DF142882    GAA48325.1    KQ979425    KYN21616.1    KQ414694    KOC63553.1    DF143135    GAA36169.2    GL888463    EGI60571.1    NIVC01000777    NIVC01000776    PAA76946.1    PAA76963.1    NIVC01000387    PAA84117.1    HE601624    CCD75639.1    KL597101    KER20038.1    KQ977565    KYN01974.1    UZAI01001401    VDO61528.1    KZ288229    PBC31705.1    UZAL01027998    VDP37586.1    UZAK01033649    VDP38917.1    FN653023    CBY18114.1    AMQM01004758    KB096676    ESO03028.1    QOIP01000014    RLU15131.1    AFYH01070735    AFYH01070736    KK107366    EZA51872.1    KL251872    KGB41421.1    HACG01041961    CEK88826.1    GL764129    EFZ18520.1    HACG01041954    CEK88819.1    KQ435877    KOX70098.1    RQTK01001303    RUS70929.1    U73123    AAC38955.1    AAGJ04104728    AAGJ04104729    KB201847    ESO94242.1    HACG01041955    CEK88820.1    MRZV01001315    PIK38778.1    AMQN01008104    KB302198    ELU04530.1    GECU01001921    JAT05786.1    EAAA01000632    AB501298    BAH59283.1    KL436421    KFW93010.1    KE161334    EPQ03174.1    GG666648    EEN46075.1    KK501736    KFP17433.1    AAGW02029260    AAGW02029261    AAGW02029262    UZAI01001152    VDO59249.1    AAPE02018719    KL251636    KGB40907.1    KL217263    KFV75669.1    NTJE010141188    MBW00854.1    HE601625    CCD77539.1    KL225822    KFM03679.1    KK735119    KFR12704.1    AANG04000169    AAEX03000382    RCHS01000676    RMX57332.1    AAKN02003415    AGTP01123348    AGTP01123349    AGTP01123350    JH166111    EHA98409.1   

Proteomes

UP000007151    UP000218220    UP000053240    UP000053268    UP000076502    UP000037510    + More
UP000009046    UP000007266    UP000005205    UP000078540    UP000050740    UP000075809    UP000000311    UP000078492    UP000053825    UP000192223    UP000007755    UP000008854    UP000095280    UP000215902    UP000005203    UP000078542    UP000050790    UP000277204    UP000242457    UP000050791    UP000050789    UP000015101    UP000279307    UP000008672    UP000053097    UP000053105    UP000271974    UP000007110    UP000030746    UP000230750    UP000014760    UP000007875    UP000248480    UP000079169    UP000076420    UP000008144    UP000252040    UP000002279    UP000001554    UP000053119    UP000001811    UP000001074    UP000050792    UP000053875    UP000245341    UP000286640    UP000085678    UP000053286    UP000053605    UP000245320    UP000011712    UP000002254    UP000275408    UP000002281    UP000005447    UP000265300    UP000248484    UP000005215    UP000245340    UP000006813   

Pfam

PF04712   Radial_spoke        + More
PF01138   RNase_PH
PF04802   SMK-1

Interpro

IPR006802   Radial_spoke        + More
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR036345   ExoRNase_PH_dom2_sf       
IPR001247   ExoRNase_PH_dom1       
IPR027408   PNPase/RNase_PH_dom_sf       
IPR006887   DUF625       
IPR011993   PH-like_dom_sf       
IPR016024   ARM-type_fold       

SUPFAM

SSF55666   SSF55666        + More
SSF54211   SSF54211       
SSF48371   SSF48371       

Gene 3D

3.30.230.70     2.30.29.30    

ProteinModelPortal

A0A212F6E7   A0A2W1B7R5   A0A2A4JFB4   A0A194RHU4   A0A194PLW4   A0A2H1VJ98   + More
A0A154P3P6   A0A0L7KW62   E0W087   D6WQE3   A0A158NCR3   A0A075AJR4   A0A1S8WLA3   A0A151I2R2   A0A310SUH3   A0A183B2V7   A0A3R7GRT6   A0A151XCQ9   E2A4D0   G7Y5T9   A0A151J996   A0A0L7QY67   H2KRA8   A0A1W4WQT0   F4WYR7   A0A3Q0KGB2   A0A1I8HZC7   A0A1I8GZ50   A0A1I8FY27   G4V5J5   A0A074YZD8   A0A088A5U1   A0A195CPE1   A0A183LKS7   A0A2A3EIV7   A0A183NYC3   A0A183K5E4   E4X3B0   T1F7C2   A0A3L8D4R2   A0A1I8INK1   H3BAM5   A0A026W6Y8   A0A095B2K7   A0A0B7B924   E9IM35   A0A0B7B639   A0A0N0BDF6   A0A3S1ASK2   O46178   W4YGB6   V4ABQ0   A0A0B7B9S3   A0A2G8JST0   R7UDR4   H2ZH03   A0A2Y9DDF4   A0A1S3D3V4   A0A2C9K7T3   A0A1B6K2V7   C4B8X4   A0A341CEV0   A0A093R2Y8   S7MG66   F7FU36   C3ZMT5   A0A091JCA6   A0A1W3JEG2   G1SY17   A0A183LJ54   A0A183K760   G1PTD3   U3KPB6   A0A095A255   A0A183RP67   A0A093J9S8   A0A2U3XT83   A0A3Q7SRB7   A0A2F0BCW9   A0A1S3IY04   G4VCB4   A0A087QR25   A0A091WAZ0   A0A2U3V606   A0A1S3I1H4   M3X9Z3   A0A3Q0KMB6   F6UPL6   A0A3M6UUI2   F6Q808   H0UU47   A0A340X040   A0A2Y9FD02   A0A287D6C0   A0A2U3ZDC7   G5AMZ9  

KEGG

101740053    no KO assigned | (RefSeq) radial spoke head protein 6 homolog A

GO

GO:0035082   GO:0005730   GO:0005654   GO:0003341   GO:0005930   GO:0001534   GO:0060271   GO:0060294  

PANTHER

PTHR13159  

Length:

176

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00249

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.08030

outside

1  -  176

 

 

Pi

290.388966

Theta

181.576377

Tajima's D

2.015551

CLR

0.3539

CSRT

0.883755812209389

Interpretation

Uncertain