Gene

KWMTBOMO14966  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000756

Annotation

Programmed_cell_death_protein_11_[Operophtera_brumata]

Location

Bomo_Chr25(-):1197516-1202091      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.987

CDS

ATGGCAGACGCGGAAGAATACTTTCCGCGAGGTGGAAAGAAGCCTACCGGTGCACATTTTAAGCAGAGTGGCAACTTTTTAGGTGTTGCAGAAAAAGCAGAAAAAAAGAAGAAAAAACCTAAGAAAAAGTCTGAGGGTGATGACGGATATCTGTCTGACGAAGCCCAAGATTATTTGAAAACACACAAGTTAAATAATAATTTAATTTTCCTAAGTTCTAAGAGTTTAAGGCCTGGAATAAATTTACTTGGCAGGGTGATTCATGTATCCGATGTCAAAATAAAAGTATCTATGCCTTGCAAACTATTGGGCAATGTCATGGCATGTCACATCAGCGAGTCTTATAATAAGCTACTCGAAGCTTATGTTGAAGATAAGACAGAAAAAGTTCGTGAATTGTCACAAATGTTCAAACCGGGTCAGTACATAGCTGTGAGTGTAGTGGAACTGGCACCTGGCAACACCATGCTGACGACTATGCCTCAACACGTAAACAGTGGGAAACGACATACCGAAATTAAGAAAGGTGCCATATTCCAAGCAGCAGTGTCATCAGTTGAAGATCACGGGTATGTAATGGACCTCGGCATACCTAACACAACAGCGTTCCTGCCGAAGAAAGATGCCAATCCCGAAATAGATCTTGGTTGA

Protein

MADAEEYFPRGGKKPTGAHFKQSGNFLGVAEKAEKKKKKPKKKSEGDDGYLSDEAQDYLKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLPKKDANPEIDLG

Uniprot

H9IU26   A0A0L7L6Y1   A0A2A4JL54   A0A2H1W1Z5   A0A194PGE4   A0A194RHU9   + More
S4PAM9   A0A212EZM0   A0A2W1BG94   A0A0S7HN06   A0A2U9BQ26   A0A060XEB2   A0A0D7AI05   A0A224Z876   L7MDP3   A0A1S3L648   A0A1S3PZZ9   A0A131YL59   A0A060Y1B7   A0A165DXE7   A0A1W7RDR7   H3D3G1   H3C389   A0A3P8XE75   A0A3B3BXE4   A0A3Q1JI54   A0A3B4XA99   A0A3B5K9H7   A0A210PGQ6   A0A2I0MEN7   A0A1V4KKC0   D8PRX6   E2AIW6   A0A315V0Z2   A0A3P9MTE7   A0A0P4VTN3   A0A0C3PJT1   A0A1S3FAA6   A0A1S3FAY2   A0A1S3FB97   G1KDA1   A0A3Q3IL63   A0A087XK24   H2UHX7   A0A3P9H0N2   A0A3Q0RHH9   A0A1W4ZZV6   A0A3P9LQM6   A0A0P7VH63   M3ZR13   A0A0J7KGV7   A0A3B3VN07   W5N1N1   F6U429   A0A0C3CVE3   B7QE53   A0A218V879   A0A0D0E6F3   A0A091DJN5   A0A1Q3EB96   A0A3Q1GJG6   A0A3Q3LV39   A0A3M0KDY4   A0A3Q7S2P3   A0A3P8TTT8   Q58EE6   A0A0C2XR88   G3Q2K9   A0A146HHB6   A0A2A9NV17   A0A2G8SD84   A0A146R5G0   A0A146YF96   A0A371DEX7   A0A3Q1BC38   A0A3L8SIJ5   Q1ED11   A0A1D5PNA1   A8N2C6   A0A3P8VN06   A0A2Z6SE62   A0A3B4VIP4   A0A3B3VNK4   A0A0D0BFD3  

Pubmed

19121390    26227816    26354079    23622113    22118469    28756777    + More
24755649    25683379    28797301    25576852    26830274    26659563    26358130    15496914    25069045    29451363    21551351    28812685    23371554    20622885    20798317    29703783    17554307    23542700    19892987    26046933    30061923    30282656    15592404    20547848    24487278   

EMBL

BABH01034248    JTDY01002537    KOB71222.1    NWSH01001137    PCG72448.1    ODYU01005797    + More
SOQ47043.1    KQ459604    KPI92098.1    KQ460205    KPJ17014.1    GAIX01004931    JAA87629.1    AGBW02011278    OWR46907.1    KZ150248    PZC71846.1    GBYX01439018    JAO42337.1    CP026250    AWP06151.1    FR905259    CDQ77761.1    KN881666    KIY51212.1    GFPF01011544    MAA22690.1    GACK01002959    JAA62075.1    GEDV01008870    JAP79687.1    FR906723    CDQ85272.1    KV427627    KZT05820.1    GDAY02002167    JAV49265.1    NEDP02076714    OWF35668.1    AKCR02000017    PKK28138.1    LSYS01003057    OPJ84257.1    GL377302    EFJ03890.1    GL439905    EFN66645.1    NHOQ01002459    PWA16932.1    GDRN01097667    JAI59092.1    KN831957    KIO08444.1    AYCK01001624    JARO02002383    KPP72797.1    LBMM01007760    KMQ89446.1    AHAT01017380    AHAT01017381    KN831769    KIM47826.1    ABJB010341792    ABJB010430943    ABJB010626337    ABJB010758290    DS918780    EEC17125.1    MUZQ01000028    OWK62285.1    KN824831    KIL00557.1    KN122182    KFO32334.1    BDGU01000190    GAW04399.1    QRBI01000108    RMC11429.1    BC091949    AAH91949.1    KN818222    KIL71753.1    DF844078    GAT47852.1    KZ301969    PFH54835.1    AYKW01000012    PIL31719.1    GCES01122700    JAQ63622.1    GCES01034121    JAR52202.1    KZ857396    RDX51109.1    QUSF01000019    RLW02239.1    BC117594    AAI17595.1    AADN05000306    AACS02000001    EAU92721.1    BEXD01004211    GBC08360.1    KN835138    KIK48434.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053268    UP000053240    UP000007151    + More
UP000246464    UP000193380    UP000087266    UP000076871    UP000007303    UP000265140    UP000261560    UP000265040    UP000261360    UP000005226    UP000242188    UP000053872    UP000190648    UP000007431    UP000000311    UP000242638    UP000054217    UP000081671    UP000001646    UP000261600    UP000028760    UP000265200    UP000261340    UP000192224    UP000265180    UP000034805    UP000002852    UP000036403    UP000261500    UP000018468    UP000002281    UP000053424    UP000001555    UP000197619    UP000054538    UP000028990    UP000188533    UP000257200    UP000261640    UP000269221    UP000286640    UP000265080    UP000054549    UP000007635    UP000242287    UP000230002    UP000256964    UP000257160    UP000276834    UP000000539    UP000001861    UP000265120    UP000247702    UP000261420    UP000054485   

PRIDE

H9IU26    L7MDP3    Q1ED11   

Pfam

PF00575   S1        + More
PF05843   Suf
PF01535   PPR

Interpro

IPR003029   S1_domain        + More
IPR012340   NA-bd_OB-fold       
IPR022967   S1_dom       
IPR011990   TPR-like_helical_dom_sf       
IPR003107   HAT       
IPR008847   Suf       
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       
IPR002885   Pentatricopeptide_repeat       

SUPFAM

SSF50249   SSF50249        + More
SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9IU26   A0A0L7L6Y1   A0A2A4JL54   A0A2H1W1Z5   A0A194PGE4   A0A194RHU9   + More
S4PAM9   A0A212EZM0   A0A2W1BG94   A0A0S7HN06   A0A2U9BQ26   A0A060XEB2   A0A0D7AI05   A0A224Z876   L7MDP3   A0A1S3L648   A0A1S3PZZ9   A0A131YL59   A0A060Y1B7   A0A165DXE7   A0A1W7RDR7   H3D3G1   H3C389   A0A3P8XE75   A0A3B3BXE4   A0A3Q1JI54   A0A3B4XA99   A0A3B5K9H7   A0A210PGQ6   A0A2I0MEN7   A0A1V4KKC0   D8PRX6   E2AIW6   A0A315V0Z2   A0A3P9MTE7   A0A0P4VTN3   A0A0C3PJT1   A0A1S3FAA6   A0A1S3FAY2   A0A1S3FB97   G1KDA1   A0A3Q3IL63   A0A087XK24   H2UHX7   A0A3P9H0N2   A0A3Q0RHH9   A0A1W4ZZV6   A0A3P9LQM6   A0A0P7VH63   M3ZR13   A0A0J7KGV7   A0A3B3VN07   W5N1N1   F6U429   A0A0C3CVE3   B7QE53   A0A218V879   A0A0D0E6F3   A0A091DJN5   A0A1Q3EB96   A0A3Q1GJG6   A0A3Q3LV39   A0A3M0KDY4   A0A3Q7S2P3   A0A3P8TTT8   Q58EE6   A0A0C2XR88   G3Q2K9   A0A146HHB6   A0A2A9NV17   A0A2G8SD84   A0A146R5G0   A0A146YF96   A0A371DEX7   A0A3Q1BC38   A0A3L8SIJ5   Q1ED11   A0A1D5PNA1   A8N2C6   A0A3P8VN06   A0A2Z6SE62   A0A3B4VIP4   A0A3B3VNK4   A0A0D0BFD3  

PDB

5WYJ     E-value=8.25274e-09,     Score=141

KEGG

101747169    K14792 rRNA biogenesis protein RRP5 | (RefSeq) protein RRP5 homolog

GO

GO:0003676   GO:0006397   GO:0005634   GO:0006396   GO:0005730   GO:0005829   GO:0032040   GO:0008134   GO:0035091   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

Length:

216

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02285

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.05277

outside

1  -  216

 

 

Pi

205.406107

Theta

161.057745

Tajima's D

1.306939

CLR

0.62771

CSRT

0.738363081845908

Interpretation

Uncertain