Gene

KWMTBOMO14965

Annotation

S33901_reverse_transcriptase_-_silkworm_transposon_Pao

Location

Bomo_Chr25(+):1193922-1196776      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.402

CDS

ATGAATTCATTTACAAAAACAGAAAATATAAACAGACTCAGAAGGAACCTGAAAGGAAGGGCAAAGGAAGCCGTTGACGGATTACTTATAACGAACGCTGATCCGTCCGACGTCATAAGAAGTCTAGAAGCGCGATTCGGAAGACCGGAAACAATAGCCATAACGGAGTTAGACACGCTACGAGCTCTGCCAAGACTAACAGAAACACCAAGAGACATTTGTATATTCTCCAGTAAGGTGACCAACGCCGTAGCTACGCTTCGTGCATTAAATTGCACACATTACTTATATAATCCGGAAACTACCAAAACAATGTTAGAAAAACTCACACCAACACTACGTTACCGATACTACGACTTCACCGCGATACAACCGAAGGAGGATCCGGATCTGATTAAATTTGAAAAATTCATGAAAAGAGAAGCCGAACTGTGCAGCCCTTATGCACAGCCTGAACAGGTGGGGCACTACTCGCAGCCCGCACAACATAACAGACGCACACAAAACGTGCACATAGTCAGTGAGAAGCCATCACGAGCTAAATGTCCGGTATGTAGCAACACTGAACACACCACAACAGACTGCTACATATTCAAGAAGGCAGACTCAAACACAAGATGGGATATCGCTAAGAATAAACACCTGTGTTTCCGATGTCTCAAGTATAGAAATAAAACCCACCACTGTAAACCGAAGACGTGTGGCATTAATGATTGCAAATATACTCACAACAAGATGCTACACTTCGACAGAAAAATTGAAAAAACAGACAAGAGTGACAAGGAAACAACAGAGAACATTAATTCCGCTTGGACCGGAAAACAGAAACAGTCCTATTTGAAAATAATCCCAGTCCAAGTACAAGGACCGATAGGCACGGTTGATACATACGCGCTGCTCGACGATGGATCAACGGTGACACTCATAGACGAAATCATTTGCAAGAAGACTGGAATAACAGGACCAATCGATCCGTTACACATACAGGCGATTAACAACATAAAATCAACGGAAACAAGGTCAAGAAGAGTCAACCTCACGCTCAGAGGCCTCAACAGTCGAAAAGAAATAATACAAGCGAGAACAGTTAACGACCTACAAGCAACAGCACAAAAAATACCAAAGGAACAGATAGATGAGTATTCGCACCTACGAGACATCAGTGACATCATCACGTACGAGAACGCGAAACCTGGAATCCTGATTGGCCAAGACAACTGGCACATGTTACTAACTTCAAAAGTTAGACGAGGCAACAGGAATCAGCCAATAGCGTCACTGACACCTCTAGGCTGGGTATTGCATGGAGGTCGCACTCGTACCCTAGGCCACCACATAAACTACATAAATCATGCTAGCGAAACCCAAGAAGATGATAAAATAGAAAATCTGATAAAACAGTATTTCGCTATGGATGCGCTATGCATCACACCAAGAAAACCAAAAACAGACCCAGAGGAACAGGCGCTTCGCATCCTCAACAGCAATACAGTCCACACAACAGATGGAAGATACGAAACTGCTCTGCTCTGGAAAACAGATAATGTCAGTCTACCAGACAACTACAATAACTCGTTAAAGCGACTGATAAATATAGAAAACAAACTCGATCGTAATCCGGAACTGAAACAGAAATACACAGAACAGATGGAAGCACTCGTCGCGAAAAGCTACGCCGAGCCCGCTCCAAAAACAAAAACAGAGAACAGAACGTGGTATCTACCTCACTTCGCCGTCGTGAACCCCCTGAAGCCGGAAAAACTCCGAGTCGTCCACGACGCCGCCGCCAGAACAAGAGGGGTAGCTTTGAATGATATGCTGCTTAAGGGACCGGACCTACTCCAATCACTACCAGGAGTGATAATGCGATTTAGACAGCATAATATAGCAGTAACAGCAGACATCAAGGAGATGTTAATGCAAGTGAAATTAAGACATGAAGACAGAGACGCGCTCCGTTATCTCTGGCGCAAAGATCAGCGAGATGACAAGCCCCCAGAAGAAAACAGAATGACCTCGTTGATCTTCGGGGCGTCAAGTTCTCCTTCCACAGCAATGTATGTAAAGAACTTGACCGCCCAGAAACAAGAAGCCACGCACCCGGAGGCGGCAGTCGCAGTACAGAACAGACACTACGTCGACGACTACTTGAACAGCTTCAAAAGTTTAAAAGTACACACAACTACAGACTTTCGTCGAAAACACGAAAGAAAACCGACCTCGAAGACCTTCTGGACCGACAGTAAGATAGTGTTGAGACGGACAAGGACGGGATCACGCTCGTACAAACCTTACGTCACCCAACGCCTGACAGCTATAGAAGACAGTGCAACAGTAAACGGGAGGCGATGGTTACCCACGAAGCATAACTCAGCCGACGACGTGACCCGCGACGTCCCAATGCCGTACCACAACGAACATAGATGGTTCAGAGGGCCAGAATTCCTATGCCAACGACGAGACTCCTGGCCCACGGAAACGGCGACAGTAACAACAACAAAATTAATAGATAAAGTAAACATAGCAGCCACAGCACCGGCGGGAGCCTCATGGCCGAGGCGTCGCCATGAAAAGTGGAAGTGCCAGCCACGAAATACACGCATGCGAGGGAAAAGTGATAGCGACATATTCAGATCCCGACAACGTGGGGCGCACCGTATACATCAAAACCAAGGGTGGAGTTCTACGGAGACCAGTACGAAAACTACTGATCCTGCCCATCGAAGAAGACCATCCTGCACCGAGAAGAATGCGACTGACTCGCACGGCGGGAGTAATGTGCAGGACGAAATAGGGTTTTAA

Protein

MNSFTKTENINRLRRNLKGRAKEAVDGLLITNADPSDVIRSLEARFGRPETIAITELDTLRALPRLTETPRDICIFSSKVTNAVATLRALNCTHYLYNPETTKTMLEKLTPTLRYRYYDFTAIQPKEDPDLIKFEKFMKREAELCSPYAQPEQVGHYSQPAQHNRRTQNVHIVSEKPSRAKCPVCSNTEHTTTDCYIFKKADSNTRWDIAKNKHLCFRCLKYRNKTHHCKPKTCGINDCKYTHNKMLHFDRKIEKTDKSDKETTENINSAWTGKQKQSYLKIIPVQVQGPIGTVDTYALLDDGSTVTLIDEIICKKTGITGPIDPLHIQAINNIKSTETRSRRVNLTLRGLNSRKEIIQARTVNDLQATAQKIPKEQIDEYSHLRDISDIITYENAKPGILIGQDNWHMLLTSKVRRGNRNQPIASLTPLGWVLHGGRTRTLGHHINYINHASETQEDDKIENLIKQYFAMDALCITPRKPKTDPEEQALRILNSNTVHTTDGRYETALLWKTDNVSLPDNYNNSLKRLINIENKLDRNPELKQKYTEQMEALVAKSYAEPAPKTKTENRTWYLPHFAVVNPLKPEKLRVVHDAAARTRGVALNDMLLKGPDLLQSLPGVIMRFRQHNIAVTADIKEMLMQVKLRHEDRDALRYLWRKDQRDDKPPEENRMTSLIFGASSSPSTAMYVKNLTAQKQEATHPEAAVAVQNRHYVDDYLNSFKSLKVHTTTDFRRKHERKPTSKTFWTDSKIVLRRTRTGSRSYKPYVTQRLTAIEDSATVNGRRWLPTKHNSADDVTRDVPMPYHNEHRWFRGPEFLCQRRDSWPTETATVTTTKLIDKVNIAATAPAGASWPRRRHEKWKCQPRNTRMRGKSDSDIFRSRQRGAHRIHQNQGWSSTETSTKTTDPAHRRRPSCTEKNATDSHGGSNVQDEIGF

Uniprot

V9GZQ1   Q2MGA5   A0A3S2N5J7   A0A2A4IX21   A0A1Y1LL75   A0A226DIM6   + More
A0A226DM06   A0A1W7R699   A0A226DH22   A0A226EKF8   A0A1W7R681   A0A182G158   A0A226EDU9   A0A226D351   A0A226EEI4   A0A226E2P7   A0A2M4A568   A0A2M4A5H2   A0A2M4A5G3   A0A2M4A5C7   A0A2M4A5D7   A0A182H5B8   A0A1W7R6M1   A0A0K3CPX7   A0A2M4AQD0   A0A2M4CKI9   K7JCQ3   A0A1Y1LL65   A0A2M4CKZ0   W8AJC8   A0A1Y1LN76   A0A2M3Z5X5   A0A2M4B8T5   A0A182HDB0   A0A2M4CKZ8   A0A2M4B8I4   A0A182HEF9   A0A1W7R6A0   A0A2M4CVY8   A0A182HCB4   A0A2M4B931   A0A2M4B962   A0A0N8ES95   A0A182H4A2   A0A2M4AMX4   A0A1W7R6H4   A0A1W7R6F7   A0A1W7R6E5   A0A2M4BAL5   A0A2M4B963   A0A2M4B9W9   A0A2M4B9D0   A0A2M4B9E1   A0A2M4B8V2   A0A2M4B8T6   W5J8X7   A0A226DV68   A0A226D8R4   A0A0N5DFH0   A0A182HDR0   A0A1W7R6D5   A0A226EFR1   A0A3R7G4M2   W4XEJ7   A0A074ZCE8   A0A085NQS3   G7Y7I6   A0A0N5DP73   A0A2B4R8F3   W4XEJ9   A0A085N9I5   A0A0V1C2G4   Q4QQD2   A0A0V1LPB1   A0A3R7C5I8   A0A0N5E7C4   A0A085N2A4  

Pubmed

8389039    28004739    26483478    23552491    20075255    24495485    + More
26999592    20920257    23761445    24929829    22023798    15939396   

EMBL

L09635    AAA75005.1    AF530470    AAQ09229.1    RSAL01000375    RVE42106.1    + More
NWSH01005440    PCG64209.1    GEZM01052588    GEZM01052587    GEZM01052586    JAV74402.1    LNIX01000019    OXA44537.1    LNIX01000015    OXA46575.1    GEHC01000956    JAV46689.1    OXA44855.1    LNIX01000003    OXA57597.1    GEHC01000967    JAV46678.1    JXUM01136032    KQ568367    KXJ69026.1    LNIX01000004    OXA55408.1    LNIX01000039    OXA39294.1    OXA55241.1    LNIX01000007    OXA52015.1    GGFK01002635    MBW35956.1    GGFK01002641    MBW35962.1    GGFK01002631    MBW35952.1    GGFK01002609    MBW35930.1    GGFK01002619    MBW35940.1    JXUM01111221    KQ565482    KXJ70922.1    GEHC01000872    JAV46773.1    LN877231    CTR11689.1    GGFK01009497    MBW42818.1    GGFL01001682    MBW65860.1    AAZX01014669    JAV74399.1    GGFL01001842    MBW66020.1    GAMC01017930    JAB88625.1    JAV74401.1    GGFM01003133    MBW23884.1    GGFJ01000302    MBW49443.1    JXUM01034199    KQ561015    KXJ80028.1    GGFL01001727    MBW65905.1    GGFJ01000218    MBW49359.1    JXUM01005879    KQ560203    KXJ83865.1    GEHC01000947    JAV46698.1    GGFL01005193    MBW69371.1    JXUM01127084    KQ567147    KXJ69602.1    GGFJ01000402    MBW49543.1    GGFJ01000401    MBW49542.1    GDUN01000090    JAN95829.1    JXUM01109099    KQ565290    KXJ71123.1    GGFK01008809    MBW42130.1    GEHC01000914    JAV46731.1    GEHC01000945    JAV46700.1    GEHC01000955    JAV46690.1    GGFJ01000935    MBW50076.1    GGFJ01000432    MBW49573.1    GGFJ01000487    MBW49628.1    GGFJ01000471    MBW49612.1    GGFJ01000470    MBW49611.1    GGFJ01000333    MBW49474.1    GGFJ01000306    MBW49447.1    ADMH02001934    ETN60411.1    LNIX01000012    OXA48116.1    LNIX01000027    OXA41945.1    JXUM01130316    KQ567562    KXJ69370.1    GEHC01000921    JAV46724.1    OXA56382.1    NIRI01000132    RJW72731.1    AAGJ04115911    KL596795    KER24838.1    KL367480    KFD71819.1    DF142918    GAA48921.1    LSMT01001301    PFX12555.1    KL367527    KFD66131.1    JYDH01000001    KRY43517.1    BN000804    CAJ00252.1    JYDW01000021    KRZ61212.1    NIRI01002071    RJW63586.1    KL367570    KFD63600.1   

Proteomes

UP000283053    UP000218220    UP000198287    UP000069940    UP000249989    UP000002358    + More
UP000000673    UP000046395    UP000007110    UP000225706    UP000054776    UP000054721   

PRIDE

V9GZQ1   

Pfam

PF03564   DUF1759        + More
PF05380   Peptidase_A17
PF00665   rve
PF18701   DUF5641
PF17921   Integrase_H2C2
PF05585   DUF1758
PF00628   PHD
PF01565   FAD_binding_4
PF09129   Chol_subst-bind
PF00078   RVT_1
PF01425   Amidase
PF01048   PNP_UDP_1
PF13855   LRR_8
PF18738   HEPN_DZIP3

Interpro

IPR005312   DUF1759        + More
IPR040676   DUF5641       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR041588   Integrase_H2C2       
IPR001878   Znf_CCHC       
IPR008737   Peptidase_asp_put       
IPR019786   Zinc_finger_PHD-type_CS       
IPR001965   Znf_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR019787   Znf_PHD-finger       
IPR011011   Znf_FYVE_PHD       
IPR006094   Oxid_FAD_bind_N       
IPR016166   FAD-bd_PCMH       
IPR016164   FAD-linked_Oxase-like_C       
IPR016170   Cytok_DH_C_sf       
IPR015213   Cholesterol_OX_subst-bd       
IPR036318   FAD-bd_PCMH-like_sf       
IPR016169   FAD-bd_PCMH_sub2       
IPR016167   FAD-bd_PCMH_sub1       
IPR001841   Znf_RING       
IPR000477   RT_dom       
IPR002999   Tudor       
IPR036875   Znf_CCHC_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000048   IQ_motif_EF-hand-BS       
IPR000253   FHA_dom       
IPR023631   Amidase_dom       
IPR036928   AS_sf       
IPR003961   FN3_dom       
IPR035994   Nucleoside_phosphorylase_sf       
IPR000845   Nucleoside_phosphorylase_d       
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR041249   HEPN_DZIP3       
IPR003591   Leu-rich_rpt_typical-subtyp       

SUPFAM

SSF53098   SSF53098        + More
SSF57903   SSF57903       
SSF56176   SSF56176       
SSF55103   SSF55103       
SSF57756   SSF57756       
SSF75304   SSF75304       
SSF53167   SSF53167       

Gene 3D

3.30.420.10     3.30.40.10     3.30.43.10     3.30.465.10     3.40.462.10     2.40.70.10     3.90.1300.10     3.40.50.1580     3.80.10.10    

CDD

cd00063  FN3

ProteinModelPortal

V9GZQ1   Q2MGA5   A0A3S2N5J7   A0A2A4IX21   A0A1Y1LL75   A0A226DIM6   + More
A0A226DM06   A0A1W7R699   A0A226DH22   A0A226EKF8   A0A1W7R681   A0A182G158   A0A226EDU9   A0A226D351   A0A226EEI4   A0A226E2P7   A0A2M4A568   A0A2M4A5H2   A0A2M4A5G3   A0A2M4A5C7   A0A2M4A5D7   A0A182H5B8   A0A1W7R6M1   A0A0K3CPX7   A0A2M4AQD0   A0A2M4CKI9   K7JCQ3   A0A1Y1LL65   A0A2M4CKZ0   W8AJC8   A0A1Y1LN76   A0A2M3Z5X5   A0A2M4B8T5   A0A182HDB0   A0A2M4CKZ8   A0A2M4B8I4   A0A182HEF9   A0A1W7R6A0   A0A2M4CVY8   A0A182HCB4   A0A2M4B931   A0A2M4B962   A0A0N8ES95   A0A182H4A2   A0A2M4AMX4   A0A1W7R6H4   A0A1W7R6F7   A0A1W7R6E5   A0A2M4BAL5   A0A2M4B963   A0A2M4B9W9   A0A2M4B9D0   A0A2M4B9E1   A0A2M4B8V2   A0A2M4B8T6   W5J8X7   A0A226DV68   A0A226D8R4   A0A0N5DFH0   A0A182HDR0   A0A1W7R6D5   A0A226EFR1   A0A3R7G4M2   W4XEJ7   A0A074ZCE8   A0A085NQS3   G7Y7I6   A0A0N5DP73   A0A2B4R8F3   W4XEJ9   A0A085N9I5   A0A0V1C2G4   Q4QQD2   A0A0V1LPB1   A0A3R7C5I8   A0A0N5E7C4   A0A085N2A4  

KEGG

NA   

GO

GO:0003964   GO:0015074   GO:0003676   GO:0008270   GO:0046872   GO:0071949   GO:0016491   GO:0016301   GO:0004040   GO:0003824   GO:0009116   GO:0016021  

Length:

933

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00425999999999999

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00022

outside

1  -  933

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

51.983228

CSRT

0

Interpretation

Uncertain