Silkworm Genome Informatics Database

Gene

KWMTBOMO14962 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000757

Annotation

PREDICTED:_rRNA_biogenesis_protein_rrp5_[Amyelois_transitella]

Location

Bomo_Chr25(-):1167604-1183911 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.378

CDS

ATGGGCTGCGACACGGGCATGGTGTGCTGGTGCGCCGTGAAGTCGGTGAAGCAGACCGCGGACAGCAGCGTGGTGGCGCTGGGCGCGGCGCCGGACTGTCTGCAGGCGGCGCGGCTACAGCACAAGCCCGACTCGCAACTGCTGCCCGGCAACGCCCTCCACTTCACCGTCGACAGCGCCGTAGACAACGGGGTCAAAGGTTTCGTGTTCGACGATGTGCAGGCGTGCGTGCTGCGGCAACACTTAGATAAGGGCAAAGCGAAGAGACCGGCGGTCGGGCAGAAGGTAACCGCCCGTGTGCTGTTTGTGATGCCGCCGAGGAACATGCCCTATCTGACGCTGAAGAACATTTTCGAGACCACATACCCTGACCTCGAGCAGGAGAGGAAATACAAGGATGGGGACATCATTGAGGAGGCGCAGGTATTAAAGATAACAGGAAGATCGGTACATATGAAGTTGGACCACGGGTGTACCGCTGTGATGAGCATCAAGAGAATTGATATCGAAGAGGAAATGACGGACGAAGAAGTCATTGCCAAATCATATCCTGTTGGCAGCACCCACAGAGTGAGGGTCCTCAACTACAATCTATCTGACTACTTCTATTCCGTGACGGATGATCCCAGTGTTGTCAACGAGAAGTACTTCACCATGGAGCAGCTGTCCGTCGGCGAGATAGTCGACGGTCACGTGAAGACAGTCACCGACTCATACATCCTGGTCTCCCTGGGGAGGATGCACGGCTACGTCGGCCTCACTCACCTGACGGACACTGGAGTGCTGCTCGACCCCCGCCAGGGTTCCAATCCTAAGCTCACCAAAAAGTTTAAGGTGGGACAGCAGGTCCGCGCGAGGGTGCTGTCCGTGGACCCTGCCAAGCCGGCCCTCATGTTGACCCTGAAGCCGTCCCTCCTCGCAGCCGACCTCGACGTGCTGCAGCGCCACGACCAGGCCGTGATCGGGAAGGTGTACACCGGGGTCATATACGCGATCCGGGACTATATACTGGTGTCGTTCTTCAACAACCTGATGGCGTACGTTCCGAAGACGATGGTCTCGATCGAGCCGATAGAGAACCTAACCGAGGCCTTCCATGTCGGACAGATTGTGAGCTGCACGATACTGAATGTGGATATCGAGAACAAGAAACTGCTGGGCAGCCTCATACCGACGCAGACCTTTCGGATCAACAGAAAACGTAAAGCCAAAGAGAAGCACGATTCAATCGGAGAAGAGAGGGAAACCGAAGACGAGGGAGCAACACAAATTAATGAGGAAAAAGATAAACCAAAAAATAAACAGACATTAGCGAGCGGAGACGCTCCTGACAAAAAGAAGAAAAAGAAGAAAGACAATAGAGTAGACGGAGAGATGAATGGGAGGACAGAAGGAAAGACATCCGAGGAGAGTGACGCCATAGACACTGACTTATCCGAGGAGTGCGAGCAGGTGTTGACTCCGGAGGACCTGGCGCTGCTCGACCTCAGCCAGTGCCGCACCAAGAAGCAGTACAAGAAGAGGATCGATTCTATATTGAATGCGGTTAGCGAAATACACAGCGGCATTCCATTACTTGAGGAGAAAATCGCAAAAATAGAAGCCAAAGGTTTGACGACGAAAAACAAAATGTTGCACACCGCGCTGCACTCCGAGAAACTTATCAACGAGGAACGCGCCAAGAAACTTAACGAAGGTCTCGAGACGGCTCGACGCGCGCTCGCCGACCTGCGCGCCGAACCTCACAACAACTGCACCAAGCAAACCGACGACGTACAGCCTGAAGTGAAAGAGAATATTGAAAATGAAAACATACAAAAGAAAATCGATAAGAAACGTAAGGCAAATAAAGAAAGAAAAAACGCTAAAGACGAAACAGAAATACGCGATAAGAAGAGAAAAGGAACAGATGATGTCCGGAAAACAGAAGATAGCAAGACAGATCAGGGGAGGAAGGGACGAGGGGAGCCGGCGGAGAAAAGACGAACCGTAAATGTCACTGAGGAGCTGCGGCCCGTCCTGCACGCGCCCAGCGCCAAGGACTTCTGGAGTGGGACACTTGACAGTGGGAAGACCCTGCAGGACCAGCAGTCCAGCAGCAGCGATGATGAGGAAAAGGAACAACCGAAGAAGAAGCGAAAGAAGCTGTCAGTTGCGGAGAAGCTAGCCAAGGCGCGGGAGGAAGAGGAACGTCTCCGGGAAATGGAGAAAAGAGCAATAGAGAGTGACGCCCAGCCGCGCTCCGCCGACCACTTCCAACGAGCACTCCTCGCCAACCCCTCCGCCAGCCAACTGTGGATAGCCTACATGGCGTTCCACTTGCAGGCTACTGAGATAGAGAAGGCCCGTGCCGTGGCCAGGAAGGCGCTCAGTACAATTTGTTTCCGTGAAGAAGATGAGAAGTTGAACGTGTGGCTGGCACTCATCAACCTCGAGAACAGATTCGGCACTAAGGAGTCTCAACAGAAGACTTTAGAGGAAGCTTTGCAGATGAACGACACTTTCAAAGTCCACTCCAAGCTGCTGGACATATATGTGGACACTGGCAAGCAGCAGGAACTCTCCGCGCTCGTCGACCTCATGCTAAGGAAATACAAAAAGGATCCAAAAACCTATACGCTGTGCGGGACAGCCTGCTACAAACTGAATCTCAAAGAGAAAGCGAGATACGTTATGCAGAAAGCCTTGAACGTTTTGGAGAAGAAAGAACATGTACAAGTGTTGGTGCAGTTCGCCCTGCTAGAGCGAGACCGCGGCGAGCGAGAGCGCGCTGAAGCCTTACTCGAACAAGTGCTCGCTGTTTACCCGCAACGCGTCGACGTGTGTGCCGTGTACGTCGATATGCTCGTTAAGGAAAACGATATCGAACGCGTTAGACAAGTTATGGAACGCATCACGTCCCATCAGTTGCCAGCTAGAAAAATGAAAGTGCTCTATAAAAAATGGATTGAAGTCGAAGAGAAGATCGGTGATGAAGGGAAAGCGGAGATAATCCGACAGCGCGCCATAGAATATGTAGAAAAAGCAAAGTTCTAA

Protein

MGCDTGMVCWCAVKSVKQTADSSVVALGAAPDCLQAARLQHKPDSQLLPGNALHFTVDSAVDNGVKGFVFDDVQACVLRQHLDKGKAKRPAVGQKVTARVLFVMPPRNMPYLTLKNIFETTYPDLEQERKYKDGDIIEEAQVLKITGRSVHMKLDHGCTAVMSIKRIDIEEEMTDEEVIAKSYPVGSTHRVRVLNYNLSDYFYSVTDDPSVVNEKYFTMEQLSVGEIVDGHVKTVTDSYILVSLGRMHGYVGLTHLTDTGVLLDPRQGSNPKLTKKFKVGQQVRARVLSVDPAKPALMLTLKPSLLAADLDVLQRHDQAVIGKVYTGVIYAIRDYILVSFFNNLMAYVPKTMVSIEPIENLTEAFHVGQIVSCTILNVDIENKKLLGSLIPTQTFRINRKRKAKEKHDSIGEERETEDEGATQINEEKDKPKNKQTLASGDAPDKKKKKKKDNRVDGEMNGRTEGKTSEESDAIDTDLSEECEQVLTPEDLALLDLSQCRTKKQYKKRIDSILNAVSEIHSGIPLLEEKIAKIEAKGLTTKNKMLHTALHSEKLINEERAKKLNEGLETARRALADLRAEPHNNCTKQTDDVQPEVKENIENENIQKKIDKKRKANKERKNAKDETEIRDKKRKGTDDVRKTEDSKTDQGRKGRGEPAEKRRTVNVTEELRPVLHAPSAKDFWSGTLDSGKTLQDQQSSSSDDEEKEQPKKKRKKLSVAEKLAKAREEEERLREMEKRAIESDAQPRSADHFQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTICFREEDEKLNVWLALINLENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYVDTGKQQELSALVDLMLRKYKKDPKTYTLCGTACYKLNLKEKARYVMQKALNVLEKKEHVQVLVQFALLERDRGERERAEALLEQVLAVYPQRVDVCAVYVDMLVKENDIERVRQVMERITSHQLPARKMKVLYKKWIEVEEKIGDEGKAEIIRQRAIEYVEKAKF

Uniprot

H9IU27

Pubmed

19121390

EMBL

BABH01034246 BABH01034247

Proteomes

UP000005204

PRIDE

H9IU27

Pfam

PF05843 Suf + More
PF00575 S1

Interpro

IPR012340   NA-bd_OB-fold        + More
IPR013026   TPR-contain_dom
IPR011990   TPR-like_helical_dom_sf
IPR003107   HAT
IPR008847   Suf
IPR003029   S1_domain
IPR022967   S1_dom

SUPFAM

SSF50249 SSF50249 + More
SSF48452 SSF48452

ProteinModelPortal

H9IU27

PDB

5WYJ E-value=5.15757e-43, Score=443

KEGG

101747169 K14792 rRNA biogenesis protein RRP5 | (RefSeq) protein RRP5 homolog

GO

GO:0003676 GO:0006397 GO:0005634 GO:0005515 GO:0006396 GO:0035091 GO:0007154 GO:0016020 GO:0005112 GO:0015930

Length:

1011

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0624600000000001

Exp number, first 60 AAs:

0.00098

Total prob of N-in:

0.00284

outside

1 - 1011

Pi

221.743605

Theta

153.339618

Tajima's D

1.351696

CLR

0.68287

CSRT

0.751562421878906

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics