SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14954  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA000760
Annotation
PREDICTED:_DNA-directed_RNA_polymerase_III_subunit_RPC1_[Bombyx_mori]
Full name
DNA-directed RNA polymerase subunit      
Location in the cell
Mitochondrial   Reliability : 1.362 Nuclear   Reliability : 1.911
 

Sequence

CDS
ATGCCTAAGGAACAATATAGAGAAACCTATGTCGGTCGAAAAATTTCGCATGTAACATTCAATGTAGACAGTCCATCGCTCATCCAGCAATCTGCTCACATTGAGGTCATCACCAAGAACTTATTTCTTCAAGATGGCCAACGTGTGCCGGCACCTCATGGAGTTCTTGACAGGCGAATGGGCACTAATCAGAAAGATGCCAACTGTGAAACTTGCGGATTGGGTTTGGCTGAATGTGTCGGGCACTTTGGGTACATACAACTCACATTGCCCGTGTTCCATGTTGGATACTTCCGAGCTATCATAACGATTCTACAGACCATATGCAAGGAATGTGCTAAAGTGATGTTACCTGAATCACTGAAGAAATCATACCGCAGGAAGTTCATCAACCCCGAAATGTCGTACCTGCTCAAGAAAAACCTCAAGGCAGTAGTCCACAAGAAAGCGAAGACCTTCAGCAAGTGTCCGTCGTGTGAGGCCATTAACGGCATGGTTAAAAAAAGTTCAATTGGCATATTAAAAATAGTGCATGAAAAGTATAGAGCTAAGAAACCAACAGATCCAATTGTAAAGAAAGTTTTAATGGATTTTCATGAAGCAAAGGAGTCCAATAAGGAGGTTGCGGCCATGATCAACAGCGGACTCGTTAAGGAAATGAGTCCTTTAGAGGTACTGAATTTATTTCGACGTATCCCAGACGAGGACATTCCCCTCCTCGGGATGAACGTGAAGCTCTCTCGTCCTGAGGACCTGATTCTGACCCGACTGCCGGTGCCGCCGCTCTGCATCCGACCTAGCGTCGTCTCCGACATCAAGGCTGGAACCAACGAAGACGACCTGACAATGAAGCAGTCTGAGATACTGCTGATCAACGACGTGATAGCGCGGCATTTGGCCAGCGCCGGCAAGTGCGAGCTCATACAGGAGGACTGGGACTACTTGCAGCTGCACGCGGCCCTCTACATCAACAGCGAGATGTCCGGGATACCGCTCGCGATGCAGCCCAAAAAACCGGGTCGGGGCTTAGTGCAGCGGCTCAAGGGCAAGCAGGGCCGGTTTAGGGGCAACTTGTCCGGGAAACGAGTGGATTTCTCGAGCAGAACTGTCATCTCGCCGGACCCGAACCTTCAGATACAAGAGGTGGGGGTCCCGGTGCACGTGGCCAAAATCCTGACGTACCCCGAGCGCGTGTTTCCCGCGAACCTGCAGTGGCTGCGGCGGCTCGTCTGCAACGGTCCCGATGTGCACCCCGGAGCCAACTACGTCCAGCAACGAGGGCTGAAGACCAAAAAGTACCTGAAGTACGGGAACAGGGAGAAGATCGCGCAAGAACTTAAGTGCGGCGACGTGGTGGAGCGACACCTGGTGGACGGTGATGTGGTGCTGTTCAACAGGCAGCCGTCCCTGCACAAGCTGTCCATCATGTGCCACCGAGCCAAGGTGCAGCCGCAGAGGACCTTCAGGTTTAACGAATGTGTGTGCACGCCTTACAACGCTGACTTCGACGGCGACGAGATGAACATGCACCTGCCGCAAACTGAGGAGGCGAGGGCCGAAGCTCTCATACTTATGGGGAACAAATCGAACCTGGTGACCCCTCGGAACGGGGAGCTCCTGATAGCGGCCACGCAAGACTTCATCACCGGCGGGTACCTCATCACCCAGAGGGACACGTTCTTCACGAAGAGCGAGGCTCAGCAGCTGGCGGCTTGTCTCCTGGCCGGCCCCGACGCCACCATGAGGATAGACATGCCGCCCCCCGCCATCATCAAACCGCGGAAGCTCTGGACCGGGAAGCAGATCTTCAGTTTGATTATGAGGCCCAACCGACGCTGCGAAGTCAAGGCCAATCTGGAAACTAAAGGGAAGAACTACACGGGGAACAAGGATTTGTGCGTGCAAGACTCTTACGTGATAATTAGGAACTCGGAGCTGGTCTGCGGGTCCATGGACAAGAGCACCCTCGGCTCTGGCACCAAGAGCAGCATCTTCTACATTCTGCTGAGGGACTGGGGCGAGGAGTATGCAGTTCGAGGAATGTGGAGGTTGGCTAGAATGGCGTCTTACTACATGATGAATCGTGGCTTCAGTTTCGGTATAATAGACGTGACGCCGGGCAAGAAACTCATAGAAGCTAAAAACAAACTTCTGGAGTCCGGGTACTCTAAATGCGACGGCTACATCCTGGAGATGGAGAAGGGCACGCTGCAGTGCCAGCCGGGATGCACCATGGAGGAGACCCTGGAGGCCGTCATGCTCAGCGAGCTCAGCAGCATAAGAGAGCTGGCAGCGAAGGCTTGCTTCCGGGAGCTTCATCCTACCAACGCGCCCCTGATCATGGCGCAGAGTGGCTCCAAAGGTTCCAACATCAACATATCGCAGATGATCGCGTGCGTGGGCCAGCAGGCGCTTAACGGGAAACGCGTACCGAACGGATTCGAAGACCGGTCCCTGCCGCACTTCGAGAGACACTCAAAGATCCCGGCTGCTCGCGGTTTCGTGGAGAACAGTTTCTACACCGGCCTGACGCCGACCGAGTTCTTCTTCCACACCATGGGAGGGCGCGAGGGGCTCGTGGACACCGCCGTCAAGACCGCAGAGACTGGCTACCTGCAGAGGCGACTTGTTAAGTCGCTGGAGGACCTGGTGCTGCAGTACGACATGACGGTCCGGAACGCGACCGGCGAGGTGGTGCAGTTCCGGTACGGCAGCGACGGCCTCGACCCCACCTACATGGAGGGCAAGGACCGCCCCGTGGACCTGGCCAGGGTGCTGGCGGACGTCAGAGCCAAGTGCCAGGATAAAAATGCAGAACCATTAGACGGTGACGGAATCGTGCTGGCCGCCGAAGAAACCCTAGCCCTGGACGACTTCAAAACCTCCACGGACGAGTTCAAGAACGAACTACTCTCGTTCCTGAAGGCGACGGCGGGGCGGGTCCGCGCGCTGCGGGCTCGGTACGCGGGCTGCGGGCGCGCGGCGCTGCAGCTGGAGCGCCTGACGCTGACGCAGCTGGTGCGCTTCCTGCGCGTGTGCCACCACAAGTACCAGCGCGGGGTCATCGAGCCCGGCACGGCGGTGGGCGCCCTCGCCGCGCAGAGTATCGGCGAGCCCGGCACCCAGATGACCCTGAAGACGTTCCATTTCGCCGGCGTCGCGTCCATGAACATAACCCAGGGGGTTCCCCGCGTCAAGGAGATCATCAACGCCTCCCGGAATATCTCCACTCCGATCATCACCGCCGAGCTCATGCAGCCTTACGACCAAGAGTTCGCCAGGAGGGTTAAAGGGAGGTTGGAGAAGACCACCCTTGGCGAGATAACGACGTACATAGAGGAAGTGTACCTGCCCTACGAATGTTTCCTGCTCATCAAGCTGGACGCGGAGAGGATAAGGCTGCTCTGTCTGGAGGTCGACGTCCATTCCATTGTGTATTCGATCTGCACGTCCAAGCTGAAGGTGAAGCCGGCGGAGGTGACGGCGGTGTCGGCCTGGGCCATCAAGGTGACGGGCGAGCCGTCCAAGAGCTGCGGCTGGCTGAACATGTCGCTGCAGCAGCTCGGGCGGCAGCTGCCCGCCGTGGTGGTGAAGGGCCTGCCGCAGGTGTCGCGCGCCGTCATCGCCTGCGACGACTCCTCGGAGAAGCCGGACCTGCCCGGCACCAAGTACAAGCTGTGCGTGGAGGGGGACGGCCTGAGGGACGTCATCGCCACCTTCGGAGTCAACGGCACGAAGACCACATCCAATAACATTCTAGAGGTGTACCACACGTTGGGGATAGAAGCCGCGAAATCTACCATCATCAGTGAGATCCAGGCCGTGATGGAAGGTCACGGCATGAGTGTGGACAGGAGGCACGTGGAGCTGCTGGCGGGGCAGATGACGGCGCGGGGGGAGGTGCTGGGCATCACCAGATACGGACTCGCCAGGATGAAGGAATCCGTTTTGAATTTGGCCAGTTTCGAGAAGACAGCTGATCATCTGTTCGACGCGGCGTTCTACGGGCAGTGCGACCGGATCGAGGGCGTGTCCGAGTCCATCATCGTGGGCACCCCCGCCGCGCTGGGCACCGGCGTGCTGCAGCTGCTGCACAAGCACCCCGACCCCGCGGACACCGCCACGCAGCAGGAGTTGCTGTTCGACAGACCGGAGTACCACCACTCCATATGGGACTGA
Protein
MPKEQYRETYVGRKISHVTFNVDSPSLIQQSAHIEVITKNLFLQDGQRVPAPHGVLDRRMGTNQKDANCETCGLGLAECVGHFGYIQLTLPVFHVGYFRAIITILQTICKECAKVMLPESLKKSYRRKFINPEMSYLLKKNLKAVVHKKAKTFSKCPSCEAINGMVKKSSIGILKIVHEKYRAKKPTDPIVKKVLMDFHEAKESNKEVAAMINSGLVKEMSPLEVLNLFRRIPDEDIPLLGMNVKLSRPEDLILTRLPVPPLCIRPSVVSDIKAGTNEDDLTMKQSEILLINDVIARHLASAGKCELIQEDWDYLQLHAALYINSEMSGIPLAMQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKILTYPERVFPANLQWLRRLVCNGPDVHPGANYVQQRGLKTKKYLKYGNREKIAQELKCGDVVERHLVDGDVVLFNRQPSLHKLSIMCHRAKVQPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGNKSNLVTPRNGELLIAATQDFITGGYLITQRDTFFTKSEAQQLAACLLAGPDATMRIDMPPPAIIKPRKLWTGKQIFSLIMRPNRRCEVKANLETKGKNYTGNKDLCVQDSYVIIRNSELVCGSMDKSTLGSGTKSSIFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGKKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCTMEETLEAVMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLQYDMTVRNATGEVVQFRYGSDGLDPTYMEGKDRPVDLARVLADVRAKCQDKNAEPLDGDGIVLAAEETLALDDFKTSTDEFKNELLSFLKATAGRVRALRARYAGCGRAALQLERLTLTQLVRFLRVCHHKYQRGVIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASRNISTPIITAELMQPYDQEFARRVKGRLEKTTLGEITTYIEEVYLPYECFLLIKLDAERIRLLCLEVDVHSIVYSICTSKLKVKPAEVTAVSAWAIKVTGEPSKSCGWLNMSLQQLGRQLPAVVVKGLPQVSRAVIACDDSSEKPDLPGTKYKLCVEGDGLRDVIATFGVNGTKTTSNNILEVYHTLGIEAAKSTIISEIQAVMEGHGMSVDRRHVELLAGQMTARGEVLGITRYGLARMKESVLNLASFEKTADHLFDAAFYGQCDRIEGVSESIIVGTPAALGTGVLQLLHKHPDPADTATQQELLFDRPEYHHSIWD

Summary

Description
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Catalytic Activity
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
Similarity
Belongs to the RNA polymerase beta' chain family.
EC Number
2.7.7.6
EMBL
NWSH01001542    PCG70910.1    BABH01034231    BABH01034232    BABH01034233    BABH01034234    + More
BABH01034235    KQ459604    KPI92105.1    KZ149945    PZC76819.1    JXUM01099391    JXUM01099392    JXUM01099393    JXUM01099394    JXUM01099395    KQ564488    KXJ72208.1    NEVH01019371    PNF22743.1    KK852667    KDR18934.1    UFQS01000611    UFQT01000611    SSX05372.1    SSX25733.1    AXCN02001896    AAAB01008968    EAA13195.5    AXCM01000528    ADMH02001922    ETN60492.1    GFDL01003296    JAV31749.1    GGFL01000822    MBW65000.1    CVRI01000007    CRK88416.1    APCN01009101    AGBW02013344    OWR43555.1    GAIX01003781    JAA88779.1    GAKP01020353    JAC38599.1    GAMC01016003    JAB90552.1    KZ288322    PBC28132.1    JXJN01018749    CCAG010018793    NNAY01000821    OXU26333.1    GEZM01036154    JAV82934.1    GBYB01007068    GBYB01007070    GBYB01007158    JAG76835.1    JAG76837.1    JAG76925.1    GBGD01000103    JAC88786.1    GFTR01008787    JAW07639.1    KQ971324    EFA01191.1    GBBI01002594    JAC16118.1    ACPB03002065    GDHF01022555    JAI29759.1    GBRD01005771    JAG60050.1    GBHO01026554    JAG17050.1    GDHC01008721    JAQ09908.1    KQ414954    KOC59073.1    DS235387    EEB15462.1    GFDL01003272    JAV31773.1    GDIQ01073081    JAN21656.1    GDIQ01267150    GDIQ01232174    GDIQ01200534    GDIQ01199282    GDIQ01184643    GDIQ01169002    GDIQ01136415    GDIQ01132912    GDIQ01128865    GDIQ01099521    GDIQ01098478    GDIQ01096567    GDIQ01035056    GDIQ01032755    GDIQ01031756    JAK19551.1    GDIP01109622    GDIP01087274    JAL94092.1    GDIQ01253727    GDIQ01203686    JAK48039.1    GDIQ01155747    JAK95978.1    GDIQ01244123    JAK07602.1    GDIQ01092523    JAL59203.1    GDIQ01214128    JAK37597.1    GDIQ01121759    JAL29967.1    GL732534    EFX84687.1    AE014298    ABW09418.2    GDIQ01158007    JAK93718.1    GDIP01191564    GDIP01186964    JAJ31838.1    GDIP01040238    JAM63477.1    GDIQ01075879    JAN18858.1    GDIQ01182795    JAK68930.1    BT133481    AFI25034.1    GDIP01120178    JAL83536.1    GDIP01203413    JAJ19989.1    GDIP01104721    JAL98993.1    GDIP01191565    JAJ31837.1    GDIP01203414    JAJ19988.1    BT031250    ABY20491.1    GDIP01177325    JAJ46077.1    GDIQ01037850    JAN56887.1    GDIP01118072    JAL85642.1    CM000162    EDX01825.1    CH902620    EDV30796.2    CH954180    EDV46964.1    GDIQ01168147    JAK83578.1    GDIQ01021512    JAN73225.1    GDIP01025151    JAM78564.1    GDIP01034941    GDIP01027503    JAM76212.1    GDIP01177321    JAJ46081.1    GDIP01060433    JAM43282.1    GDIP01156865    JAJ66537.1    GDIQ01065937    JAN28800.1    GDIQ01036497    JAN58240.1    GDIQ01014994    JAN79743.1    GDIP01032239    JAM71476.1    CH963851    EDW75315.1   
Pfam
PF00623   RNA_pol_Rpb1_2        + More
PF04997   RNA_pol_Rpb1_1
PF05000   RNA_pol_Rpb1_4
PF04998   RNA_pol_Rpb1_5
PF04983   RNA_pol_Rpb1_3
Interpro
IPR007083   RNA_pol_Rpb1_4        + More
IPR006592   RNA_pol_N       
IPR035697   RNAP_III_RPC1_N       
IPR038120   Rpb1_funnel_sf       
IPR000722   RNA_pol_asu       
IPR035698   RNAP_III_Rpc1_C       
IPR042102   RNA_pol_Rpb1_3_sf       
IPR007081   RNA_pol_Rpb1_5       
IPR007080   RNA_pol_Rpb1_1       
IPR007066   RNA_pol_Rpb1_3       
Gene 3D
PDB
6F44     E-value=0,     Score=3284

Ontologies

Topology

Length:
1392
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.86614
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.08395
outside
1  -  1392
 
 

Population Genetic Test Statistics

Pi
190.581271
Theta
167.530517
Tajima's D
0.21383
CLR
1.264712
CSRT
0.430028498575071
Interpretation
Uncertain
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