Gene

KWMTBOMO14953  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000813

Annotation

PREDICTED:_retinol_dehydrogenase_13-like_[Papilio_polytes]

Location

Bomo_Chr25(+):1028443-1038414      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.05 Mitochondrial   Reliability : 1.278

CDS

ATGTGGGTTCCCAGCACGCCGGTAACTTTGGTGACTGCAGTAGCGGCCGTGGCTGGTGGGGTGTGCATATTCAAAGATTACTACAGTGGTCCTCCGTACGACCGGTCCGTCCGTGCCGACAACAGAACAATTATAATTACTGGTGCTAACAGCGGTATCGGGAAAGCTGCAGCAAAAGACTTCGCCAAAAGGGGTGCTAAGGTGTTTATGGCGTGCCGTGACGTCAAGAAGTGCGAGGAGCAACGACGCGACATCGTGCTTGAGACGAACAACAAGTACGTGTACTGCAGACCCTGCGACCTGGCCAGCACGGCCTCCATCAGAGAGTTCGTTGCCAGATTCAAAGGAGAGGAGCCACACCTTCATGTGCTGGTCAATAACGCCGGGGTGATGGAACCACCCAAGGGAGTCACTAAGGACGGCTTCGAGACCCAGCTCGGGGTCAATCACCTCGGACATTTCTTGCTGACAAACTTGCTCCTGGATACGCTCAAGGCCTCAGCCCCGAGCCGCGTGGTGGTGGTGTCGAGCAGCGCGCACCAGCGCGGGCGGATCCACAAGCAGGACCTCAACATGAGCGAGAACTATGACGCGTCCGCCGCCTACAGCCAGAGCAAGCTCGCCAACCTACTGTTCGCGCGGGAGCTCGGCAGGAGGTTACTCGGAACTGGAGTGGCGACAATCGCAGTAGACCCTGGCCTCGTAGACACGGACATCACCCGCCACATGTCAATGATGAAAAGCGTTACTCGGTTCTTCATATACCCACTGTTCTGGCCCTTCATGAAGAAACCCGAAATCGGAGGGCAAACAGTAGTACACGCTGCCCTAGACCCTAAGCTGAAAGACTGCGCCGGAGACTATTACGTTGATATGAAGAAAGCTGAACCATCACAAGAAGCTCAAGACTTCGAGCTGGCTCAGTGGCTGTGGAGGGTCAGCGAGGCGTGGACCAAGCTGGACGAGCATAAACAAGCCATCGCCAAAGACACACGGAATTAG

Protein

MWVPSTPVTLVTAVAAVAGGVCIFKDYYSGPPYDRSVRADNRTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPCDLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVNHLGHFLLTNLLLDTLKASAPSRVVVVSSSAHQRGRIHKQDLNMSENYDASAAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGGQTVVHAALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRVSEAWTKLDEHKQAIAKDTRN

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9IU83   A0A2W1BPB9   A0A2H1V0I4   A0A2A4JGG3   A0A3S2NRJ6   A0A194PFG2   + More
A0A194RGS8   A0A1W4WYE7   A0A1B6H9T6   T1I4Q4   A0A1B0AAX4   A0A1A9UWG7   A0A1B6EUT9   A0A1B0AYR4   E9J8J2   A0A0T6BDA0   A0A224XTS0   A0A1A9YGG4   A0A195FCN8   A0A1B0FE94   A0A067RLP9   E2C6J3   A0A1B6LTS6   B3N9W1   A0A158NBV6   A0A0K8TLB0   A0A1I8M9J0   A0A2M4BTT4   B4J7Z2   B4H8I4   A0A2M3ZCQ8   A0A1W4VZF7   A0A0M4EVS0   W8CDP7   Q28YK4   A0A084W0X3   W5JL96   A0A1A9W9N4   F4X8E8   A0A151X9L1   A0A2M4BTU8   A0A2M4AW80   A0A195BEY3   A0A0J9R7K6   B4HR47   Q7JUS1   B4P1S7   B4QEQ2   A0A182TVW4   A0A182YCZ5   W8C5R8   A0A0J7KBW3   A0A151J924   A0A0L0C2H0   A0A0Q9W4U8   A0A182WKM2   U5EU75   A0A182TCC6   A0A182UVS1   A0A1C7CZE8   A0A182I1T9   A0A182X743   B0WVA8   Q7Q686   A0A1L8EH13   A0A3B0J367   A0A0M9A417   B4N649   A0A0R3NU57   B3MHR9   A0A182FGX8   A0A0Q9WH74   K7IUK5   A0A182K5N8   A0A182P5J6   A0A3L8DTE9   E2AR14   A0A1Q3FGF3   A0A232F458   A0A158NBV5   A0A1Q3FGI4   A0A1S4F244   A0A1Y1JX22   A0A1L8E4K6   A0A195C9Z0   A0A182REG7   A0A182NIK0   A0A1I8PH20   A0A2A3ERX9   A0A182MJR3   A0A087ZZP4   A0A336LUI6   A0A1B6C7X2   A0A182H592   A0A0K8VTD1   Q17I51   A0A0A1X931   A0A034W0F6   A0A026X3N1   N6SYJ7  

Pubmed

19121390    28756777    26354079    21282665    24845553    20798317    + More
17994087    21347285    26369729    25315136    24495485    15632085    24438588    20920257    23761445    21719571    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    25244985    26108605    20966253    12364791    14747013    17210077    20075255    30249741    28648823    28004739    26483478    17510324    25830018    25348373    24508170    23537049   

EMBL

BABH01034229    BABH01034230    KZ149945    PZC76818.1    ODYU01000125    SOQ34373.1    + More
NWSH01001542    PCG70909.1    RSAL01000004    RVE54553.1    KQ459604    KPI92106.1    KQ460205    KPJ17023.1    GECU01036314    JAS71392.1    ACPB03014599    GECZ01028004    JAS41765.1    JXJN01005924    GL769034    EFZ10865.1    LJIG01001628    KRT85312.1    GFTR01005075    JAW11351.1    KQ981673    KYN38405.1    CCAG010000559    KK852433    KDR23963.1    GL453160    EFN76395.1    GEBQ01012958    JAT27019.1    CH954177    EDV59657.1    ADTU01011331    GDAI01002635    JAI14968.1    GGFJ01007283    MBW56424.1    CH916367    EDW02222.1    CH479223    EDW35019.1    GGFM01005489    MBW26240.1    CP012524    ALC42025.1    GAMC01001576    JAC04980.1    CM000071    EAL25962.2    ATLV01019163    KE525263    KFB43867.1    ADMH02001240    ETN63539.1    GL888932    EGI57150.1    KQ982373    KYQ57052.1    GGFJ01007282    MBW56423.1    GGFK01011723    MBW45044.1    KQ976500    KYM83151.1    CM002911    KMY92051.1    CH480816    EDW46790.1    AE013599    AY122067    AAF59216.3    AAM52579.1    CM000157    EDW89213.1    CM000362    EDX06048.1    GAMC01001577    JAC04979.1    LBMM01009835    KMQ87853.1    KQ979433    KYN21565.1    JRES01000975    KNC26553.1    CH940648    KRF80051.1    GANO01002446    JAB57425.1    APCN01000093    DS232121    EDS35451.1    AAAB01008960    EAA10915.4    GFDG01000855    JAV17944.1    OUUW01000001    SPP75735.1    KQ435741    KOX76785.1    CH964154    EDW79838.2    KRT02701.1    CH902619    EDV36906.1    KRF80053.1    AAZX01004215    QOIP01000004    RLU23572.1    GL441846    EFN64160.1    GFDL01008421    JAV26624.1    NNAY01001089    OXU25177.1    GFDL01008390    JAV26655.1    GEZM01103119    JAV51556.1    GFDF01000414    JAV13670.1    KQ978068    KYM97530.1    KZ288191    PBC34450.1    AXCM01002675    UFQS01000102    UFQT01000102    SSW99637.1    SSX20017.1    GEDC01027702    JAS09596.1    JXUM01025925    KQ560738    KXJ81071.1    GDHF01010201    GDHF01002729    JAI42113.1    JAI49585.1    CH477243    EAT46307.1    GBXI01007042    JAD07250.1    GAKP01011739    JAC47213.1    KK107036    EZA62004.1    APGK01059446    KB741293    ENN70283.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000192223    + More
UP000015103    UP000092445    UP000078200    UP000092460    UP000092443    UP000078541    UP000092444    UP000027135    UP000008237    UP000008711    UP000005205    UP000095301    UP000001070    UP000008744    UP000192221    UP000092553    UP000001819    UP000030765    UP000000673    UP000091820    UP000007755    UP000075809    UP000078540    UP000001292    UP000000803    UP000002282    UP000000304    UP000075902    UP000076408    UP000036403    UP000078492    UP000037069    UP000008792    UP000075920    UP000075901    UP000075903    UP000075882    UP000075840    UP000076407    UP000002320    UP000007062    UP000268350    UP000053105    UP000007798    UP000007801    UP000069272    UP000002358    UP000075881    UP000075885    UP000279307    UP000000311    UP000215335    UP000078542    UP000075900    UP000075884    UP000095300    UP000242457    UP000075883    UP000005203    UP000069940    UP000249989    UP000008820    UP000053097    UP000019118   

PRIDE

H9IU83    Q7JUS1   

Pfam

PF00106   adh_short        + More
PF05811   DUF842
PF03145   Sina

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       
IPR008560   DUF842_euk       
IPR013083   Znf_RING/FYVE/PHD       
IPR013010   Znf_SIAH       
IPR008974   TRAF-like       
IPR018121   7-in-absentia-prot_TRAF-dom       
IPR001841   Znf_RING       

SUPFAM

SSF51735   SSF51735        + More
SSF49599   SSF49599       

Gene 3D

2.60.210.10     3.30.40.10    

ProteinModelPortal

H9IU83   A0A2W1BPB9   A0A2H1V0I4   A0A2A4JGG3   A0A3S2NRJ6   A0A194PFG2   + More
A0A194RGS8   A0A1W4WYE7   A0A1B6H9T6   T1I4Q4   A0A1B0AAX4   A0A1A9UWG7   A0A1B6EUT9   A0A1B0AYR4   E9J8J2   A0A0T6BDA0   A0A224XTS0   A0A1A9YGG4   A0A195FCN8   A0A1B0FE94   A0A067RLP9   E2C6J3   A0A1B6LTS6   B3N9W1   A0A158NBV6   A0A0K8TLB0   A0A1I8M9J0   A0A2M4BTT4   B4J7Z2   B4H8I4   A0A2M3ZCQ8   A0A1W4VZF7   A0A0M4EVS0   W8CDP7   Q28YK4   A0A084W0X3   W5JL96   A0A1A9W9N4   F4X8E8   A0A151X9L1   A0A2M4BTU8   A0A2M4AW80   A0A195BEY3   A0A0J9R7K6   B4HR47   Q7JUS1   B4P1S7   B4QEQ2   A0A182TVW4   A0A182YCZ5   W8C5R8   A0A0J7KBW3   A0A151J924   A0A0L0C2H0   A0A0Q9W4U8   A0A182WKM2   U5EU75   A0A182TCC6   A0A182UVS1   A0A1C7CZE8   A0A182I1T9   A0A182X743   B0WVA8   Q7Q686   A0A1L8EH13   A0A3B0J367   A0A0M9A417   B4N649   A0A0R3NU57   B3MHR9   A0A182FGX8   A0A0Q9WH74   K7IUK5   A0A182K5N8   A0A182P5J6   A0A3L8DTE9   E2AR14   A0A1Q3FGF3   A0A232F458   A0A158NBV5   A0A1Q3FGI4   A0A1S4F244   A0A1Y1JX22   A0A1L8E4K6   A0A195C9Z0   A0A182REG7   A0A182NIK0   A0A1I8PH20   A0A2A3ERX9   A0A182MJR3   A0A087ZZP4   A0A336LUI6   A0A1B6C7X2   A0A182H592   A0A0K8VTD1   Q17I51   A0A0A1X931   A0A034W0F6   A0A026X3N1   N6SYJ7  

PDB

3RD5     E-value=7.79997e-29,     Score=316

KEGG

101746618    no KO assigned | (RefSeq) retinol dehydrogenase 13-like

GO

GO:0016491   GO:0052650   GO:0016021   GO:0007275   GO:0005634   GO:0008270   GO:0006511  

Length:

333

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.90627

Exp number, first 60 AAs:

6.78796

Total prob of N-in:

0.20817

outside

1  -  333

 

 

Pi

175.093735

Theta

160.219726

Tajima's D

0.541423

CLR

0.786309

CSRT

0.531073446327684

Interpretation

Uncertain