Gene

KWMTBOMO14948

Pre Gene Modal

BGIBMGA000762

Annotation

PREDICTED:_thyroid_transcription_factor_1-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(-):946997-975052      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 4.082

CDS

ATGGGCGGGCTGGCGGCGTGTGCAGGTCCTGACGCCAAGCCCATGCAATTCCCGTTGGCGCAGCGGCGGAAGAGGAGAGTGCTCTTTACACAAGCCCAGGTTTACGAGCTGGAGCGGAGATTTAAGCAGCAGAAGTATCTGTCGGCGCCGGAGAGGGAGCACCTCGCTTCGCTCATTCACCTAACGCCGACCCAAGTCAAAATATGGTTTCAAAACCATCGTTACAAATGTAAGAGACAAGCTAAAGAGAAAGCAATGGCGGAACAGAACCAACATAATCAGGTAACGTATTGCCCGCAGTCGTCATCGTCGCCGCGACGGGTCGCAGTTCCCGTGCTGGTGAAGGACGGCAAGCCGTGCGGGGCGGGCGAGTCGTCCTCGCCGGCGCACAGCCACTGCGCCACGCCCACCTCCGGGTACTCGGCCCCTCAGGGCTCGCAGGCCGCCTGCAGCAACCCGCTGGTCTCCTCGTACCGGCAGCCCGCCGCGTACCAGCAGCAATGCTCGGGATACCTGCCGCTACAGGGTCGAGCCTGGTAG

Protein

MGGLAACAGPDAKPMQFPLAQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQVTYCPQSSSSPRRVAVPVLVKDGKPCGAGESSSPAHSHCATPTSGYSAPQGSQAACSNPLVSSYRQPAAYQQQCSGYLPLQGRAW

Uniprot

A0A2H1WDM0   A0A2A4K7T4   A0A2W1BT56   A0A194PGF3   A0A212EYG8   A0A1B0CEF2   + More
A0A1W4VYH7   A0A0R1E856   B4IV98   A0A0P9A989   A0A336N2U9   B3NJ53   A8Y527   B4GMA5   A0A3B0KT07   Q7PL95   A0A1J1IRY9   B3MWX3   A0A1A9W3K8   Q9NCG1   A0A336LTW9   D6WPZ8   B4KAU6   W8BN78   B4JHS5   B4NA09   B4LVR0   A0A1A9XZC3   A0A1B0BJE1   A0A1A9VEP0   A0A1A9ZXJ9   A0A0R1E8Q8   A0A0Q9WDS9   W8C9W6   A0A1Y9HAJ6   A0A034WVQ1   A0A1B0FAA0   A0A0K8W1D0   A0A0K8U9P1   A0A2J7PKS8   A0A0A1X2E8   A0A182LTG7   A0A026VVB2   T1JDL6   A0A195BNG0   A0A158NKN6   E0VIY7   A0A195CKW2   A0A2S2Q9G8   A0A2H8TGP7   J9JLF2   A0A0C9Q4P7   A0A2S2P6H3   A0A2A3ERV4   K7JAH5   A0A088A0E0   A0A3P9A4B5   A0A1S3S7P2   A0A3P8YF76   Q58A08   A0A3B3ZH48   A0A1S3M983   A0A226P406   Q58A09   A0A3Q3FAV0   A0A2D0Q012   A0A226MU60   A0A3B3S1H1   A0A3B3TAQ6   A0A3Q2X202  

Pubmed

28756777    26354079    22118469    17994087    17550304    10731132    + More
12537568    12537572    12537573    12537574    16110336    17569856    17569867    18057021    10842079    18362917    19820115    24495485    25348373    25830018    24508170    21347285    20566863    20075255    25069045    25463417    24621616    29240929   

EMBL

ODYU01007941    SOQ51151.1    NWSH01000070    PCG79974.1    KZ149945    PZC76815.1    + More
KQ459604    KPI92108.1    AGBW02011506    OWR46543.1    AJWK01008827    AJWK01008828    AJWK01008829    CH892673    KRK05528.1    EDX00263.2    CH902627    KPU74873.1    UFQS01002127    UFQT01002127    SSX13282.1    SSX32718.1    CH954178    EDV52836.2    AE014296    EDP28066.2    CH479185    EDW37979.1    OUUW01000014    SPP88361.1    EAA45970.1    CVRI01000059    CRL03005.1    EDV33953.2    KPU74875.1    AF220096    AAF26436.1    UFQT01000189    SSX21375.1    KQ971354    EFA07447.2    CH933806    EDW13619.1    KRG00508.1    KRG00509.1    GAMC01006293    GAMC01006289    JAC00263.1    CH916369    EDV93914.1    CH964232    EDW81764.2    CH940650    EDW66483.1    JXJN01015373    JXJN01015374    KRK05529.1    KRF82707.1    GAMC01006295    GAMC01006292    GAMC01006291    JAC00265.1    AXCN02001164    GAKP01001089    JAC57863.1    CCAG010015604    GDHF01007420    JAI44894.1    GDHF01029016    GDHF01016634    GDHF01008293    GDHF01004783    GDHF01000477    JAI23298.1    JAI35680.1    JAI44021.1    JAI47531.1    JAI51837.1    NEVH01024531    PNF16935.1    GBXI01009226    JAD05066.1    AXCM01004066    AXCM01004067    KK107796    EZA47723.1    JH432107    KQ976439    KYM86736.1    ADTU01018930    ADTU01018931    ADTU01018932    ADTU01018933    ADTU01018934    ADTU01018935    DS235215    EEB13343.1    KQ977649    KYN00719.1    GGMS01005164    MBY74367.1    GFXV01001406    MBW13211.1    ABLF02019158    GBYB01009058    JAG78825.1    GGMR01012396    MBY25015.1    KZ288194    PBC33946.1    AAZX01004917    AAZX01008692    AB159044    BAD93686.1    AWGT02000182    OXB74320.1    AB159043    BAD93685.1    MCFN01000463    OXB58539.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000092461    UP000192221    UP000002282    + More
UP000007801    UP000008711    UP000000803    UP000008744    UP000268350    UP000183832    UP000091820    UP000007266    UP000009192    UP000001070    UP000007798    UP000008792    UP000092443    UP000092460    UP000078200    UP000092445    UP000075886    UP000092444    UP000235965    UP000075883    UP000053097    UP000078540    UP000005205    UP000009046    UP000078542    UP000007819    UP000242457    UP000002358    UP000005203    UP000265140    UP000087266    UP000261520    UP000198419    UP000261660    UP000221080    UP000198323    UP000261540    UP000264840   

PRIDE

Q7PL95    Q9NCG1   

Pfam

PF00046   Homeodomain

Interpro

IPR009057   Homeobox-like_sf        + More
IPR020479   Homeobox_metazoa       
IPR001356   Homeobox_dom       
IPR017970   Homeobox_CS       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

A0A2H1WDM0   A0A2A4K7T4   A0A2W1BT56   A0A194PGF3   A0A212EYG8   A0A1B0CEF2   + More
A0A1W4VYH7   A0A0R1E856   B4IV98   A0A0P9A989   A0A336N2U9   B3NJ53   A8Y527   B4GMA5   A0A3B0KT07   Q7PL95   A0A1J1IRY9   B3MWX3   A0A1A9W3K8   Q9NCG1   A0A336LTW9   D6WPZ8   B4KAU6   W8BN78   B4JHS5   B4NA09   B4LVR0   A0A1A9XZC3   A0A1B0BJE1   A0A1A9VEP0   A0A1A9ZXJ9   A0A0R1E8Q8   A0A0Q9WDS9   W8C9W6   A0A1Y9HAJ6   A0A034WVQ1   A0A1B0FAA0   A0A0K8W1D0   A0A0K8U9P1   A0A2J7PKS8   A0A0A1X2E8   A0A182LTG7   A0A026VVB2   T1JDL6   A0A195BNG0   A0A158NKN6   E0VIY7   A0A195CKW2   A0A2S2Q9G8   A0A2H8TGP7   J9JLF2   A0A0C9Q4P7   A0A2S2P6H3   A0A2A3ERV4   K7JAH5   A0A088A0E0   A0A3P9A4B5   A0A1S3S7P2   A0A3P8YF76   Q58A08   A0A3B3ZH48   A0A1S3M983   A0A226P406   Q58A09   A0A3Q3FAV0   A0A2D0Q012   A0A226MU60   A0A3B3S1H1   A0A3B3TAQ6   A0A3Q2X202  

PDB

1FTT     E-value=5.37326e-23,     Score=262

KEGG

101739075    K09342 homeobox protein Nkx-2.1 | (RefSeq) thyroid transcription factor 1-like

GO

GO:0043565   GO:0006355   GO:0005634   GO:0048813   GO:0003677   GO:0030154   GO:0045944   GO:0003700   GO:0000978   GO:0016021   GO:0001046   GO:0006886   GO:0016192   GO:0030117   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

Subcellular location

Nucleus  

Length:

179

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00181

Exp number, first 60 AAs:

0.00069

Total prob of N-in:

0.02564

outside

1  -  179

 

 

Pi

173.449962

Theta

168.396863

Tajima's D

0.270832

CLR

1.030159

CSRT

0.44322783860807

Interpretation

Possibly Positive selection