Gene

KWMTBOMO14931  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000800

Annotation

AP-2_complex_subunit_sigma_[Solenopsis_invicta]

Location

Bomo_Chr25(+):670303-673804      View in EpiBrowser

Full name

AP complex subunit sigma      

Location in the cell

Cytoplasmic   Reliability : 1.777

CDS

ATGATAAGATTCATTTTGATCCAGAACCGAGCAGGCAAGACTCGACTTGCGAAATGGTATATGAATTTTGATGATGACGAAAAACAGAAGTTGATAGAAGAAGTGCATGCAGTCGTCACCGTCAGAGACGCGAAACACACGAACTTTGTCGAGTTCAGAAATTTCAAGATAGTATACAGGAGGTATGCAGGTCTGTACTTCTGTATATGTGTCGATGTAAATGATAACAATTTGTGTTATCTCGAGGCCATACATAACTTTGTCGAGGTCCTAAATGAATATTTCCATAATGTTTGCGAGTTGGACTTGGTCTTCAATTTTTATAAAGTGTATACGGTTGTAGACGAAATGTTTTTGGCTGGTGAGATCAGGGAGACATCCCAAACTAAAGTGCTCAAACAACTCTTGATGCTGAACTCCTTAGAATAA

Protein

MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLNSLE

Similarity

Belongs to the adaptor complexes small subunit family.

Uniprot

A0A0N7Z9E3   A0A0L7L1Z4   A0A2W1BP11   D3KD02   A0A3S2M6A2   A0A139WEN5   + More
A0A0V0GA54   A0A2A3E807   A0A2H1WME0   R4UNW1   A0A067R3E0   A0A1B6M8Z8   H9IU70   S4PDF8   A0A1B6HSN1   A0A3L8D6I2   A0A212EHB3   A0A069DW12   R4FPH9   A0A1B6FDP5   A0A0A9Z3D8   A0A1E1W7T2   A0A023F9N7   A0A224Y0K2   A0A0M8ZQE2   A0A1L8EI68   I4DP90   A0A1Q3EU05   A0A2M4CSS3   E0VYJ3   A0A194PLZ1   A0A2M4AXX4   A0A1L8DVW5   W8C7F3   D3TRZ9   A0A1I8NA29   A0A1A9YLN8   A0A0K8TYF5   A0A1A9UJU0   T1DQR4   A0A1B0BYC5   U5EV46   A0A034W3Q0   A0A182Y3R7   A0A1I8PF61   A0A0L0CJ59   A0A0A1XPQ1   A0A1L8EHV3   A0A1B0GJ46   A0A2M4C2N5   A0A1A9WY15   A0A182PSK1   A0A182MIJ9   A0A182R0Q1   A0A182SGI8   A0A182UQG5   A0A182NRV0   A0A182JRZ7   B0WQZ7   A0A182VZK8   A0A182TPD2   Q1HRK8   A0A182JDS2   A0A182WSS0   Q7PY17   A0A182F7H8   A0A182RIM5   A0A182HLM3   A0A023EET5   A0A1Y1MM25   A0A195ELI6   A0A0K8TTG1   A0A151IMN4   K7IQF3   A0A0P6IV35   A0A162NMK5   E9GIN4   A0A0P5EYG0   A0A1W4VLI3   B4MBG9   B4R122   B4KCU9   A0A3B0KW73   Q29B05   B4GZ92   T1H1D9   B3LZ31   B4NKG7   B4IKI0   B3P034   Q9VDC3   Q6XI64   A0A1B6EGN2   C4WWX9   A0A232ETT8   T1JMU4   N6TR84   A0A1W4XC34   K9IRP1   A0A1L8EHU3  

Pubmed

27129103    26227816    28756777    18362917    19820115    24845553    + More
19121390    23622113    30249741    22118469    26334808    25401762    26823975    25474469    22651552    20566863    26354079    24495485    20353571    25315136    25348373    25244985    26108605    25830018    17204158    17510324    12364791    14747013    17210077    24945155    26483478    28004739    26369729    20075255    21292972    17994087    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    14525923    17550304    28648823    23537049   

EMBL

GDKW01000787    JAI55808.1    JTDY01003459    KOB69523.1    KZ149945    PZC76799.1    + More
GU471224    ADC34230.1    RSAL01000022    RVE52350.1    KQ971354    KYB26396.1    GECL01001315    JAP04809.1    KZ288353    PBC27319.1    ODYU01009603    SOQ54146.1    KC741041    AGM32865.1    KK852730    KDR17519.1    GEBQ01007653    JAT32324.1    BABH01034198    GAIX01003701    JAA88859.1    GECU01030018    JAS77688.1    QOIP01000012    RLU16077.1    AGBW02014918    OWR40875.1    GBGD01003385    JAC85504.1    ACPB03003281    GAHY01000874    JAA76636.1    GECZ01030336    GECZ01021449    GECZ01003015    JAS39433.1    JAS48320.1    JAS66754.1    GBHO01003833    GBHO01003832    GDHC01022005    GDHC01019040    JAG39771.1    JAG39772.1    JAP96623.1    JAP99588.1    GDQN01008143    GDQN01004941    JAT82911.1    JAT86113.1    GBBI01000520    GEMB01000443    JAC18192.1    JAS02681.1    GFTR01002487    JAW13939.1    KQ435916    KOX68797.1    GFDG01000483    JAV18316.1    AK403474    BAM19730.1    GFDL01016245    JAV18800.1    GGFL01004199    MBW68377.1    DS235845    EEB18449.1    KQ459604    KPI92125.1    GGFK01012322    MBW45643.1    GFDF01003516    JAV10568.1    GAMC01008046    JAB98509.1    EZ424201    ADD20477.1    GDHF01033023    JAI19291.1    GAMD01002309    JAA99281.1    JXJN01022585    GANO01001183    JAB58688.1    GAKP01010544    JAC48408.1    JRES01000409    KNC31514.1    GBXI01001739    JAD12553.1    GFDG01000487    JAV18312.1    AJWK01019307    GGFJ01010439    MBW59580.1    AXCM01000082    AXCN02000250    DS232047    EDS33084.1    DQ440086    CH478277    ABF18119.1    EAT33340.1    AXCP01000903    AAAB01008987    EAA01622.2    APCN01000909    JXUM01081971    GAPW01005706    KQ563280    JAC07892.1    KXJ74134.1    GEZM01031317    JAV84936.1    KQ978730    KYN28991.1    GDAI01000378    JAI17225.1    KQ977026    KYN06218.1    GDIQ01027321    JAN67416.1    LRGB01000568    KZS18122.1    GL732546    EFX80717.1    GDIQ01265288    JAJ86436.1    CH940656    EDW58440.1    CM000364    EDX12109.1    CH933806    EDW16971.2    OUUW01000013    SPP88228.1    CM000070    EAL27194.2    CH479198    EDW28110.1    CAQQ02381001    CH902617    EDV41905.1    CH964272    EDW85139.1    CH480853    EDW51584.1    CH954181    EDV48270.1    AE014297    BT010252    KX531360    AAF55874.1    AAQ23570.1    ANY27170.1    AY231968    CM000160    AAR09991.1    EDW96244.1    GEDC01030594    GEDC01003951    GEDC01000264    JAS06704.1    JAS33347.1    JAS37034.1    ABLF02024669    AK342337    BAH72399.1    NNAY01002238    OXU21754.1    JH431868    APGK01057866    KB741282    ENN70831.1    GABZ01002828    JAA50697.1    GFDG01000512    JAV18287.1   

Proteomes

UP000037510    UP000283053    UP000007266    UP000242457    UP000027135    UP000005204    + More
UP000279307    UP000007151    UP000015103    UP000053105    UP000009046    UP000053268    UP000095301    UP000092443    UP000078200    UP000092460    UP000076408    UP000095300    UP000037069    UP000092461    UP000091820    UP000075885    UP000075883    UP000075886    UP000075901    UP000075903    UP000075884    UP000075881    UP000002320    UP000075920    UP000075902    UP000008820    UP000075880    UP000076407    UP000007062    UP000069272    UP000075900    UP000075840    UP000069940    UP000249989    UP000078492    UP000078542    UP000002358    UP000076858    UP000000305    UP000192221    UP000008792    UP000000304    UP000009192    UP000268350    UP000001819    UP000008744    UP000015102    UP000007801    UP000007798    UP000001292    UP000008711    UP000000803    UP000002282    UP000007819    UP000215335    UP000019118    UP000192223   

PRIDE

H9IU70    Q9VDC3   

Pfam

PF01217   Clat_adaptor_s

Interpro

IPR011012   Longin-like_dom_sf        + More
IPR000804   Clathrin_sm-chain_CS       
IPR016635   AP_complex_ssu       
IPR027156   APS2       
IPR022775   AP_mu_sigma_su       

SUPFAM

SSF64356   SSF64356       

ProteinModelPortal

A0A0N7Z9E3   A0A0L7L1Z4   A0A2W1BP11   D3KD02   A0A3S2M6A2   A0A139WEN5   + More
A0A0V0GA54   A0A2A3E807   A0A2H1WME0   R4UNW1   A0A067R3E0   A0A1B6M8Z8   H9IU70   S4PDF8   A0A1B6HSN1   A0A3L8D6I2   A0A212EHB3   A0A069DW12   R4FPH9   A0A1B6FDP5   A0A0A9Z3D8   A0A1E1W7T2   A0A023F9N7   A0A224Y0K2   A0A0M8ZQE2   A0A1L8EI68   I4DP90   A0A1Q3EU05   A0A2M4CSS3   E0VYJ3   A0A194PLZ1   A0A2M4AXX4   A0A1L8DVW5   W8C7F3   D3TRZ9   A0A1I8NA29   A0A1A9YLN8   A0A0K8TYF5   A0A1A9UJU0   T1DQR4   A0A1B0BYC5   U5EV46   A0A034W3Q0   A0A182Y3R7   A0A1I8PF61   A0A0L0CJ59   A0A0A1XPQ1   A0A1L8EHV3   A0A1B0GJ46   A0A2M4C2N5   A0A1A9WY15   A0A182PSK1   A0A182MIJ9   A0A182R0Q1   A0A182SGI8   A0A182UQG5   A0A182NRV0   A0A182JRZ7   B0WQZ7   A0A182VZK8   A0A182TPD2   Q1HRK8   A0A182JDS2   A0A182WSS0   Q7PY17   A0A182F7H8   A0A182RIM5   A0A182HLM3   A0A023EET5   A0A1Y1MM25   A0A195ELI6   A0A0K8TTG1   A0A151IMN4   K7IQF3   A0A0P6IV35   A0A162NMK5   E9GIN4   A0A0P5EYG0   A0A1W4VLI3   B4MBG9   B4R122   B4KCU9   A0A3B0KW73   Q29B05   B4GZ92   T1H1D9   B3LZ31   B4NKG7   B4IKI0   B3P034   Q9VDC3   Q6XI64   A0A1B6EGN2   C4WWX9   A0A232ETT8   T1JMU4   N6TR84   A0A1W4XC34   K9IRP1   A0A1L8EHU3  

PDB

4UQI     E-value=1.34749e-67,     Score=644

KEGG

101744646    K11827 AP-2 complex subunit sigma-1 | (RefSeq) AP-2 complex subunit sigma

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0030122   GO:0016192   GO:0006886   GO:0008565   GO:0005623   GO:0016020   GO:0043231   GO:0016021   GO:0006897   GO:0006810   GO:0015031   GO:0030117   GO:0007154   GO:0005112   GO:0015930  

PANTHER

PTHR11753   PTHR11753:SF6  

Length:

142

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.12991

Exp number, first 60 AAs:

0.00228

Total prob of N-in:

0.19955

outside

1  -  142

 

 

Pi

171.256439

Theta

150.539161

Tajima's D

0.432624

CLR

0.778442

CSRT

0.501174941252937

Interpretation

Uncertain