Gene

KWMTBOMO14930

Pre Gene Modal

BGIBMGA000769

Annotation

PREDICTED:_hippocampus_abundant_transcript_1_protein_[Papilio_polytes]

Location

Bomo_Chr25(-):658197-669072      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.98

CDS

ATGACGCCCACGAAGACCACTAAAACCGAAGTAGAAATGGTGATACGGAACAGAAAAACAGTTATGAAAGACGGGATAATGACAATGTCTGGAATCGGCGAGCCTTCTGTTTTTCACGCTCTGGTCGTTATTTTTTTGGAGTTTTTCGCGTGGGGCTTGCTCACTATGCCGATAATATCGGTACTGAACGCGACCTTTCCCGACCACACGTTCCTGATGAACGGATTGATCATGGGAATCAAGGGCATACTGTCTTTCCTCTCCGCGCCACTCATCGGAGCCCTGTCGGACGTGTGGGGCCGCAAGTTCTTTCTGTTGGTGACGGTATTCTTCACATGTGCCCCGATCCCGCTCATGACTATCAATACCTGGTGGTTCTTCGCGATGATCAGCATCAGCGGAGTGTTCGCGGTCACGTTTTCGATAGTGTTCGCGTACGTGGCTGACGTGACGACCGAAGCGGAGCGGTCTCGCGCGTACGGCCTCGTCTCCGCTACGTTTGCGGCTAGTCTAGTCATATCACCCGCTTTGGGTGCCTACCTTATGGATTTGTATGGAGAGTCCCTCGTCGTGGCTGCCGCTACCGCTGTTGCTGTACTGGACGTGTTCTTTATTATGGTCGCGGTGCCTGAGAGCCTCCCAGAGAAAGTGAGACCAACCGGCTGGGGCCCTGTCATCAGCTGGGAACAAGCAGATCCTTTTGCTGCACTGAGGAAAGTTGGTGCTGAGCGCACTGTGCTCATGCTATGTGTGGCAGTATTCCTCTCCTATCTGCCTGAAGCTGGACAGTACTCATGCATATTTGTTTACTTGAAACTAGTGATGGGTTTTGGTGTAGTGCAAGTGGCCATATTTATTGCTATTGTTGGTGTTTTGAGCATCGGAGTGCAAGTTATTCTTGGATTTTTGATGAAGTCTCTGGGAGCAAAACACACAATAATGGTGGGACTATTGTTTGAGATGCTGCAATTGATGTGGTATGGATTTGGCAGTCGTACGTGGATGATGTGGGCTGCCGGTGTGTTAGCCGCACTTGGTTCCATCACATACCCAGCGATCAGTGCTTATGTGTCAGTAAACAGCCGTGCAGACCGACAGGGAGTTGTACAAGGCATGGTAACTGGAGTCCGTGGACTTTGTAATGGCCTGGGTCCAGCCATGTTTGGAGTAATCTTCTATCTCTTCCATGTAGATTTAAATGAAGGTCATAACAAAACTGGTAGGATTCCTGAAGAGAGGCATGCATTACTGGTTCCTGGGCCACCATTCGTTTTGGGTGCATTACTCGTCATTTGTGCATTGCTGGTGACCGCTTTCTTACCTGAGGAGGATTCAAATGGAAGACGTGCACCAGCCGATCTCCGATTCGAGATGGAGCGTGGGCGGCGTGTTGCTGGCCCTCTGTCTCCGCTCATGGCGCCCGAATCAGCAGCACTCTAG

Protein

MTPTKTTKTEVEMVIRNRKTVMKDGIMTMSGIGEPSVFHALVVIFLEFFAWGLLTMPIISVLNATFPDHTFLMNGLIMGIKGILSFLSAPLIGALSDVWGRKFFLLVTVFFTCAPIPLMTINTWWFFAMISISGVFAVTFSIVFAYVADVTTEAERSRAYGLVSATFAASLVISPALGAYLMDLYGESLVVAAATAVAVLDVFFIMVAVPESLPEKVRPTGWGPVISWEQADPFAALRKVGAERTVLMLCVAVFLSYLPEAGQYSCIFVYLKLVMGFGVVQVAIFIAIVGVLSIGVQVILGFLMKSLGAKHTIMVGLLFEMLQLMWYGFGSRTWMMWAAGVLAALGSITYPAISAYVSVNSRADRQGVVQGMVTGVRGLCNGLGPAMFGVIFYLFHVDLNEGHNKTGRIPEERHALLVPGPPFVLGALLVICALLVTAFLPEEDSNGRRAPADLRFEMERGRRVAGPLSPLMAPESAAL

Uniprot

H9IU39   A0A2H1WM46   A0A2W1BPA0   A0A194PFH9   A0A194RM40   A0A0L7L2K5   + More
A0A212EHB5   A0A2J7PY09   A0A023F3T5   A0A069DUL9   A0A2J7PY04   A0A2J7PY57   A0A1B6CFG6   A0A067RIP5   A0A0V0G4U9   A0A1B6KLN2   A0A2C9GPS2   A0A2M4DS10   A0A2M4DRY9   A0A1Q3G3K5   A0A0A9Z6I7   A0A1Q3G3I1   A0A146MFL6   A0A0K8T669   A0A0A9Z3D6   A0A0K8T6J8   A0A146LLD2   A0A1S4G638   A0A1Q3FVQ1   A0A182WJP5   A0A182RTW1   A0A182MG67   A7URI8   A0A1Q3FVS8   A0A182QU61   A0A182YMN8   A0A0C9QVD2   A0A2C9GPS1   W5J9G0   J9HIM6   A0A182FG87   A0A2M4BH10   A0A195FKR5   A0A2M4BHK7   Q7QJ38   A0A2M4AE48   A0A2M4AF96   A0A084VQV6   A0A2M3ZEZ9   A0A2M4AF13   A0A2M4BL74   A0A0A1WKP6   A0A2M4BL15   W8BRE4   T1I7T9   A0A1L8DDM4   A0A034VD19   A0A0K8WLU0   A0A2M4AF46   A0A034VE60   A0A1Q3G305   A0A0K8VJN2   A0A0K8WG72   A0A1Q3G338   A0A1Q3G3I6   A0A1Q3G307   V5G1J2   A0A1Q3G3I9   D2A581   A0A1Y1NGI5   A0A1Q3G3H1   A0A1I8N9N6   A0A1B0GCP9   A0A1B0B9G2   V9I9W0   A0A1S4G685   A0A1I8PCE8   A0A182H9N9   A0A182SR14   U5ETH7   A0A1S3DU92   A0A0A1XAL0   A0A0Q9WQX4   A0A0L0CC82   A0A2C9GPS5   A0A1I8N9P4   A0A195BAR9   A0A1B0AD35   A0A151WEU0   J9HZ23   A0A2M4A8G5   F4WR63   A0A026W5U4   J9HSW9   E9J2N1   A0A3B0J9A7   A0A2M4CJ57   A0A2M4DRW4   A0A158NU85   A0A158NU86  

Pubmed

19121390    28756777    26354079    26227816    22118469    25474469    + More
26334808    24845553    25401762    26823975    12364791    14747013    17210077    25244985    20920257    23761445    17510324    24438588    25830018    24495485    25348373    18362917    19820115    28004739    25315136    26483478    17994087    26108605    21719571    24508170    21282665    21347285   

EMBL

BABH01034198    ODYU01009603    SOQ54145.1    KZ149945    PZC76798.1    KQ459604    + More
KPI92126.1    KQ460205    KPJ17051.1    JTDY01003459    KOB69524.1    AGBW02014918    OWR40874.1    NEVH01020851    PNF21229.1    GBBI01002656    JAC16056.1    GBGD01001244    JAC87645.1    PNF21228.1    PNF21230.1    GEDC01025124    JAS12174.1    KK852455    KDR23637.1    GECL01003392    JAP02732.1    GEBQ01027627    JAT12350.1    APCN01000180    GGFL01016124    MBW80302.1    GGFL01016123    MBW80301.1    GFDL01000674    JAV34371.1    GBHO01004641    JAG38963.1    GFDL01000680    JAV34365.1    GDHC01000105    JAQ18524.1    GBRD01004807    GBRD01004806    JAG61014.1    GBHO01004640    JAG38964.1    GBRD01004810    GBRD01004809    JAG61011.1    GDHC01009871    JAQ08758.1    GFDL01003523    JAV31522.1    AXCM01002723    AAAB01008807    EDO64630.1    GFDL01003522    JAV31523.1    AXCN02000543    GBYB01004632    JAG74399.1    ADMH02002078    ETN59490.1    CH477491    EJY57734.1    GGFJ01003181    MBW52322.1    KQ981512    KYN40852.1    GGFJ01003147    MBW52288.1    EAA04080.3    GGFK01005742    MBW39063.1    GGFK01006071    MBW39392.1    ATLV01015332    KE525006    KFB40350.1    GGFM01006341    MBW27092.1    GGFK01006016    MBW39337.1    GGFJ01004664    MBW53805.1    GBXI01017220    GBXI01015329    JAC97071.1    JAC98962.1    GGFJ01004604    MBW53745.1    GAMC01007132    JAB99423.1    ACPB03016780    GFDF01009523    JAV04561.1    GAKP01018553    JAC40399.1    GDHF01023626    GDHF01012563    GDHF01000494    JAI28688.1    JAI39751.1    JAI51820.1    GGFK01006046    MBW39367.1    GAKP01018555    JAC40397.1    GFDL01000848    JAV34197.1    GDHF01013215    JAI39099.1    GDHF01002153    JAI50161.1    GFDL01000831    JAV34214.1    GFDL01000694    JAV34351.1    GFDL01000840    JAV34205.1    GALX01004576    JAB63890.1    GFDL01000672    JAV34373.1    KQ971345    EFA05115.2    GEZM01002995    JAV97002.1    GFDL01000690    JAV34355.1    CCAG010002182    JXJN01010373    JR037674    AEY57908.1    JXUM01030417    JXUM01030418    JXUM01030419    JXUM01030420    JXUM01030421    JXUM01030422    GANO01001912    JAB57959.1    GBXI01006574    JAD07718.1    CH940647    KRF83857.1    JRES01000611    KNC29860.1    KQ976532    KYM81633.1    KQ983238    KYQ46363.1    EJY57735.1    GGFK01003738    MBW37059.1    GL888284    EGI63290.1    KK107390    EZA51378.1    EJY57733.1    GL767899    EFZ12923.1    OUUW01000002    SPP76512.1    GGFL01000740    MBW64918.1    GGFL01016116    MBW80294.1    ADTU01026288   

Proteomes

UP000005204    UP000053268    UP000053240    UP000037510    UP000007151    UP000235965    + More
UP000027135    UP000075840    UP000075920    UP000075900    UP000075883    UP000007062    UP000075886    UP000076408    UP000000673    UP000008820    UP000069272    UP000078541    UP000030765    UP000015103    UP000007266    UP000095301    UP000092444    UP000092460    UP000095300    UP000069940    UP000075901    UP000079169    UP000008792    UP000037069    UP000078540    UP000092445    UP000075809    UP000007755    UP000053097    UP000268350    UP000005205   

PRIDE

H9IU39   

Pfam

PF07690   MFS_1        + More
PF02854   MIF4G
PF09088   MIF4G_like
PF09090   MIF4G_like_2

Interpro

IPR020846   MFS_dom        + More
IPR036259   MFS_trans_sf       
IPR001958   Tet-R_TetA/multi-R_MdtG       
IPR005829   Sugar_transporter_CS       
IPR011701   MFS       
IPR015174   MIF4G-like_typ-2       
IPR027159   CBP80       
IPR016021   MIF4-like_sf       
IPR003890   MIF4G-like_typ-3       
IPR016024   ARM-type_fold       
IPR015172   MIF4G-like_typ-1       

SUPFAM

SSF103473   SSF103473        + More
SSF48371   SSF48371       

Gene 3D

1.25.40.180    

CDD

cd06174  MFS

ProteinModelPortal

H9IU39   A0A2H1WM46   A0A2W1BPA0   A0A194PFH9   A0A194RM40   A0A0L7L2K5   + More
A0A212EHB5   A0A2J7PY09   A0A023F3T5   A0A069DUL9   A0A2J7PY04   A0A2J7PY57   A0A1B6CFG6   A0A067RIP5   A0A0V0G4U9   A0A1B6KLN2   A0A2C9GPS2   A0A2M4DS10   A0A2M4DRY9   A0A1Q3G3K5   A0A0A9Z6I7   A0A1Q3G3I1   A0A146MFL6   A0A0K8T669   A0A0A9Z3D6   A0A0K8T6J8   A0A146LLD2   A0A1S4G638   A0A1Q3FVQ1   A0A182WJP5   A0A182RTW1   A0A182MG67   A7URI8   A0A1Q3FVS8   A0A182QU61   A0A182YMN8   A0A0C9QVD2   A0A2C9GPS1   W5J9G0   J9HIM6   A0A182FG87   A0A2M4BH10   A0A195FKR5   A0A2M4BHK7   Q7QJ38   A0A2M4AE48   A0A2M4AF96   A0A084VQV6   A0A2M3ZEZ9   A0A2M4AF13   A0A2M4BL74   A0A0A1WKP6   A0A2M4BL15   W8BRE4   T1I7T9   A0A1L8DDM4   A0A034VD19   A0A0K8WLU0   A0A2M4AF46   A0A034VE60   A0A1Q3G305   A0A0K8VJN2   A0A0K8WG72   A0A1Q3G338   A0A1Q3G3I6   A0A1Q3G307   V5G1J2   A0A1Q3G3I9   D2A581   A0A1Y1NGI5   A0A1Q3G3H1   A0A1I8N9N6   A0A1B0GCP9   A0A1B0B9G2   V9I9W0   A0A1S4G685   A0A1I8PCE8   A0A182H9N9   A0A182SR14   U5ETH7   A0A1S3DU92   A0A0A1XAL0   A0A0Q9WQX4   A0A0L0CC82   A0A2C9GPS5   A0A1I8N9P4   A0A195BAR9   A0A1B0AD35   A0A151WEU0   J9HZ23   A0A2M4A8G5   F4WR63   A0A026W5U4   J9HSW9   E9J2N1   A0A3B0J9A7   A0A2M4CJ57   A0A2M4DRW4   A0A158NU85   A0A158NU86  

PDB

3WDO     E-value=0.0280798,     Score=88

KEGG

101744983    no KO assigned | (RefSeq) hippocampus abundant transcript 1 protein

GO

GO:0005215   GO:0055085   GO:0016021   GO:0051028   GO:0045292   GO:0000339   GO:0005846   GO:0005524   GO:0006468   GO:0004672   GO:0004697   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

PANTHER

PTHR12412  

Length:

479

Number of predicted TMHs:

12

Exp number of AAs in TMHs:

260.26093

Exp number, first 60 AAs:

22.76401

Total prob of N-in:

0.99909

POSSIBLE N-term signal

sequence

inside

1  -  36

TMhelix

37  -  59

outside

60  -  73

TMhelix

74  -  96

inside

97  -  102

TMhelix

103  -  121

outside

122  -  124

TMhelix

125  -  147

inside

148  -  159

TMhelix

160  -  182

outside

183  -  186

TMhelix

187  -  209

inside

210  -  244

TMhelix

245  -  267

outside

268  -  281

TMhelix

282  -  304

inside

305  -  310

TMhelix

311  -  330

outside

331  -  334

TMhelix

335  -  357

inside

358  -  377

TMhelix

378  -  397

outside

398  -  416

TMhelix

417  -  439

inside

440  -  479

 

 

Pi

248.971941

Theta

208.279821

Tajima's D

0.542117

CLR

0.529276

CSRT

0.534573271336433

Interpretation

Uncertain