Gene

KWMTBOMO14927  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000798

Annotation

PREDICTED:_RNA-binding_protein_Nova-2_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr25(+):573393-621562      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.04 Mitochondrial   Reliability : 1.108

CDS

ATGGAACGCGCTTGTCTGATCACCGGCTCGGTGGAGGGGATCATGGTTGTGTTGGACTTCATTATGGAGAAGATTAAAGAGAAGCCAGAGCTCGTGAAGCCATTCCCGGAGGGAGTCGACACTAAAATGCCCCAGGACAGAGACAAACAGGTGAAGATCTTGGTGCCAAACTCGACAGCTGGCATGATAATCGGCAAAGGCGGCAACTACATCAAGCAGATCAAGGAACAGAGCGGCAGCTACGTTCAGATCTCGCAGAAGGCCAAGGAATTGTCCTTGCAGGAGAGGTGCATTACTGTTGTGGGCGAGAAGGAAAGCAACAAGAAGGCCTGCCTCATGATCCTTCAGAAGGTGGTTGATGACCCTCAGTCCGGGTCGTGCCCCAACGTATCATACGCGGACGTGGCCGGACCGGTCGCCAACTACAATCCGACGGGATCGCCCTACGCTGTACCCACCGCCGAGAGTCACGGGCTCGGCGGTGCGGTGGGCGGAGTGGGCGGGGTGCTGATGAACGGCGGCGGCGCGCTGGGCGGGCTGGGCGCGCTCGCCCTGCAGCTGTACCTGGCGCCGCCCGGCACCCCGCCCTCCGCGCCCATCACGCAGCACACCCTCGACCACATCAAGGGCGCGCTGCGGCAGGCCGGCTACAGCGAGGCTGGGGTGAGCGAGATCGGCGCGGCGCTGGGGCTGCTGGTGAAGCACGGCGTGCTGGGGCTGGGCGTGGGGGGCCCGATGCCCGCGCCGCCCGCGCTCTCCGCCGCCTACTTCCCACTGCCCGCGCAGGACCCGCCCGCCGTCTTCGGACCCCTCGCGCAGGTCTCGCTAGGCGGCGCGCGCGGCGGCTCGCTCGACCGTTTCGCGGAGGTTGCATTCGAGGCGCTTCGCCCCCCAGCCGTGGCGCCCATCTCGCTGCAAGGCGGCGTGCCGTTCCCGTCGGCCTCGCTGCTGCCGCTGTCCAAGAGCCCCACGCCGGCCGACGCGCAGCCCAAGGACTCTAAGAACGTCGAGATAGCGGAGGTCATCGTCGGCGCCATCCTCGGGCCGGGAGGGCGCAGCCTGGTGGAGATACAGCAGATGTCCGGGGCCAACATCCAGATCTCGAAGAAGGGCACGTTCGCTCCCGGCACCCGGAACCGCATCGTCACCATCTCCGGCTCGCAGACGGCCATCAGCAACGCTCACTACCTCATCGAGCAGAAGATCCAGGAGGAGGAGCTGAAGCGGACCAGGCACAACGCCATCTCGACCCTCATGCAGTAA

Protein

MERACLITGSVEGIMVVLDFIMEKIKEKPELVKPFPEGVDTKMPQDRDKQVKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKESNKKACLMILQKVVDDPQSGSCPNVSYADVAGPVANYNPTGSPYAVPTAESHGLGGAVGGVGGVLMNGGGALGGLGALALQLYLAPPGTPPSAPITQHTLDHIKGALRQAGYSEAGVSEIGAALGLLVKHGVLGLGVGGPMPAPPALSAAYFPLPAQDPPAVFGPLAQVSLGGARGGSLDRFAEVAFEALRPPAVAPISLQGGVPFPSASLLPLSKSPTPADAQPKDSKNVEIAEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGSQTAISNAHYLIEQKIQEEELKRTRHNAISTLMQ

Uniprot

A0A194RHY9   A0A212EHC0   A0A194PFI4   A0A0L7LG18   A0A2H1VS90   A0A1Y1LIP9   + More
A0A1Y1LH63   V5GMR4   D6WPZ1   U4UI29   N6UC93   A0A2P8XX37   E2B6J6   A0A026WT92   A0A2A3ERT9   V9II74   A0A088AB41   A0A0J7KEI4   A0A182GXK6   A0A2M4A663   E9JAZ8   A0A195BH93   A0A195C006   A0A2M4A5S1   F4WFW8   A0A151JSH0   A0A195F1N4   E2ABZ7   A0A151XBI4   A0A3L8DAM9   Q16EY8   A0A182FAC2   A0A1L8DH20   A0A158NLA9   A0A1L8DG89   A0A023ESU8   T1DI40   A0A1B6ED52   A0A1B6DRI1   A0A1S4GG92   A0A2C9GQG9   Q7QD06   A0A1Y9H210   A0A182XHJ2   A0A182UTK8   A0A1B6EHS5   A0A2C9GXC1   A0A2C9GQA4   A0A0B4KFY5   A0A1B6M1I5   Q8T4D1   A0A0R1E1V8   A0A2C9GQA0   Q0KI96   A0A2C9GXB5   A0A182VRM5   Q9GQN4   Q9GQN3   B4HKD5   Q8INP0   A0A0B4LGY5   Q8IGS7   A0A182XV56   A0A0B4LI06   A0A023UKB8   A0A1Y9H2H6   A0A182P630   A0A182MM01   B4JEK8   A0A0B4JCX5   A0A0B4KGY6   A0A0R1E1W7   A0A0R1E6F8   A0A0R1E1W9   A0A0R1E6D5   A0A0R1E299   A0A1W4W2N2   A0A1W4VPY2   A0A0R1E2F8   A0A0R1E6D8   B4PUN7   B3NZS2   A0A0R1E3B8   A0A1W4W2M2   A0A023F1K7   A0A224XQ52   B7PQM3   A0A1W4VPL9   A0A1W4VPW7   A0A0K8T1F7   A0A0A9Y503   A0A2M4A7C4   W5J335   A0A2M3Z1X7   A0A0P6EHZ8   A0A2M4CH96   A0A2M4CGZ4  

Pubmed

26354079    22118469    26227816    28004739    18362917    19820115    + More
23537049    29403074    20798317    24508170    26483478    21282665    21719571    30249741    17510324    21347285    24945155    24330624    12364791    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17994087    17550304    25244985    25474469    25401762    26823975    20920257    23761445   

EMBL

KQ460205    KPJ17054.1    AGBW02014918    OWR40870.1    KQ459604    KPI92131.1    + More
JTDY01001252    KOB74397.1    ODYU01004145    SOQ43705.1    GEZM01057603    GEZM01057601    JAV72230.1    GEZM01057604    GEZM01057602    JAV72231.1    GALX01003077    JAB65389.1    KQ971354    EFA06153.2    KB632333    ERL92682.1    APGK01035299    KB740923    ENN78251.1    PYGN01001220    PSN36570.1    GL445975    EFN88688.1    KK107111    EZA58891.1    KZ288194    PBC33839.1    JR048992    AEY60828.1    LBMM01008781    KMQ88644.1    JXUM01095512    KQ564200    KXJ72596.1    GGFK01002797    MBW36118.1    GL770707    EFZ09994.1    KQ976488    KYM83524.1    KQ978501    KYM93506.1    GGFK01002657    MBW35978.1    GL888128    EGI66735.1    KQ978530    KYN30319.1    KQ981866    KYN34082.1    GL438389    EFN69015.1    KQ982320    KYQ57732.1    QOIP01000011    RLU16978.1    CH478548    EAT32800.1    GFDF01008332    JAV05752.1    ADTU01019250    ADTU01019251    ADTU01019252    ADTU01019253    ADTU01019254    GFDF01008730    JAV05354.1    GAPW01001236    JAC12362.1    GALA01001166    JAA93686.1    GEDC01001432    JAS35866.1    GEDC01009004    JAS28294.1    AAAB01008859    APCN01000586    EAA08028.5    GECZ01032290    JAS37479.1    AE014297    AGB95796.1    GEBQ01010195    JAT29782.1    AY089247    AAL89985.1    ABI31154.1    CM000160    KRK03260.1    ABI31152.1    ADV37292.1    ADV37293.1    AF220422    AAF54377.3    AAG36789.1    AAN13424.2    AAN13425.2    ADV37290.1    ADV37294.1    AF220423    AAF54378.2    AAG36790.1    CH480815    EDW42885.1    AAN13428.1    AHN57251.1    BT001623    AAN71378.1    AHN57252.1    BT150444    AHY03616.1    AXCM01000411    AXCM01000412    CH916369    EDV93139.1    ADV37291.1    AGB95797.1    KRK03259.1    KRK03268.1    KRK03261.1    KRK03269.1    KRK03258.1    KRK03257.1    KRK03263.1    KRK03264.1    KRK03271.1    KRK03266.1    EDW96654.1    KRK03265.1    KRK03267.1    KRK03270.1    CH954181    EDV49782.1    KRK03262.1    GBBI01003529    JAC15183.1    GFTR01006295    JAW10131.1    ABJB010402307    DS766405    EEC08895.1    GBRD01006821    JAG59000.1    GBHO01031266    GBHO01015482    GDHC01001637    JAG12338.1    JAG28122.1    JAQ16992.1    GGFK01003309    MBW36630.1    ADMH02002218    ETN57733.1    GGFM01001786    MBW22537.1    GDIQ01075248    JAN19489.1    GGFL01000451    MBW64629.1    GGFL01000442    MBW64620.1   

Proteomes

UP000053240    UP000007151    UP000053268    UP000037510    UP000007266    UP000030742    + More
UP000019118    UP000245037    UP000008237    UP000053097    UP000242457    UP000005203    UP000036403    UP000069940    UP000249989    UP000078540    UP000078542    UP000007755    UP000078492    UP000078541    UP000000311    UP000075809    UP000279307    UP000008820    UP000069272    UP000005205    UP000075840    UP000007062    UP000075884    UP000076407    UP000075903    UP000000803    UP000002282    UP000075920    UP000001292    UP000076408    UP000075885    UP000075883    UP000001070    UP000192221    UP000008711    UP000001555    UP000000673   

PRIDE

Q8T4D1    Q0KI96    Q9GQN4    Q9GQN3    Q8INP0    Q8IGS7    + More

Pfam

PF00013   KH_1

Interpro

IPR004088   KH_dom_type_1        + More
IPR004087   KH_dom       
IPR036612   KH_dom_type_1_sf       
IPR033086   NOVA1       

SUPFAM

SSF54791   SSF54791       

Gene 3D

3.30.1370.10    

ProteinModelPortal

A0A194RHY9   A0A212EHC0   A0A194PFI4   A0A0L7LG18   A0A2H1VS90   A0A1Y1LIP9   + More
A0A1Y1LH63   V5GMR4   D6WPZ1   U4UI29   N6UC93   A0A2P8XX37   E2B6J6   A0A026WT92   A0A2A3ERT9   V9II74   A0A088AB41   A0A0J7KEI4   A0A182GXK6   A0A2M4A663   E9JAZ8   A0A195BH93   A0A195C006   A0A2M4A5S1   F4WFW8   A0A151JSH0   A0A195F1N4   E2ABZ7   A0A151XBI4   A0A3L8DAM9   Q16EY8   A0A182FAC2   A0A1L8DH20   A0A158NLA9   A0A1L8DG89   A0A023ESU8   T1DI40   A0A1B6ED52   A0A1B6DRI1   A0A1S4GG92   A0A2C9GQG9   Q7QD06   A0A1Y9H210   A0A182XHJ2   A0A182UTK8   A0A1B6EHS5   A0A2C9GXC1   A0A2C9GQA4   A0A0B4KFY5   A0A1B6M1I5   Q8T4D1   A0A0R1E1V8   A0A2C9GQA0   Q0KI96   A0A2C9GXB5   A0A182VRM5   Q9GQN4   Q9GQN3   B4HKD5   Q8INP0   A0A0B4LGY5   Q8IGS7   A0A182XV56   A0A0B4LI06   A0A023UKB8   A0A1Y9H2H6   A0A182P630   A0A182MM01   B4JEK8   A0A0B4JCX5   A0A0B4KGY6   A0A0R1E1W7   A0A0R1E6F8   A0A0R1E1W9   A0A0R1E6D5   A0A0R1E299   A0A1W4W2N2   A0A1W4VPY2   A0A0R1E2F8   A0A0R1E6D8   B4PUN7   B3NZS2   A0A0R1E3B8   A0A1W4W2M2   A0A023F1K7   A0A224XQ52   B7PQM3   A0A1W4VPL9   A0A1W4VPW7   A0A0K8T1F7   A0A0A9Y503   A0A2M4A7C4   W5J335   A0A2M3Z1X7   A0A0P6EHZ8   A0A2M4CH96   A0A2M4CGZ4  

PDB

2ANR     E-value=1.69465e-24,     Score=279

KEGG

101744404    K14944 RNA-binding protein Nova | (RefSeq) RNA-binding protein Nova-2

GO

GO:0003723   GO:0005634   GO:0005829   GO:0000381   GO:0033120   GO:0097157   GO:0016787   GO:0003676   GO:0008270   GO:0004672   GO:0004697   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

PANTHER

PTHR10288:SF229  

Length:

420

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.68451

Exp number, first 60 AAs:

0.22221

Total prob of N-in:

0.07416

outside

1  -  420

 

 

Pi

221.331448

Theta

186.681759

Tajima's D

0.418185

CLR

0.631191

CSRT

0.499975001249937

Interpretation

Uncertain