Gene

KWMTBOMO14925  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000793

Annotation

PREDICTED:_protein_YIF1A_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(+):528533-533878      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.159

CDS

ATGAATTTTAACGCGTCCAGAAACGTAGGGCCTTCAGGTGCCATCCGTAAAGCAAAACGAGTAAGTGATGTAGCTGCCATGGGTACTCCAGCACCTAACCCTGCATTTAGTCCCACTGCATATAGCCCTGGGTATGCACCTACAGGACCTCCTCCGCCTTACCAGGAAAGCTTCCAATTAGATGCCAATCAAGATTTTAATACACATGCTCCTGCAGGTAATTTTGGATTTGCTGGGGGATTTCCTTCTCCAATGACTTCCCCGGCGCAAATAAGCTCTATGCTGCAACAACCTGTAGTCCAGGACATGGCTATTCAATACGGCAACCAGCTCGCGGCTCAAGGCAAGGAGGCTGTGCAACGAGAATTGCACAAGTTTGTGCCAGTCTCGAGGCTGCGGTACTATTTTGCAGTCGATACAAGATATGTTATAAGGAAACTAATGCTCATAGTCTTCCCCTATACTCATAAGGAGTGGATGGTGAAATACGATCAAGACACTCCAGTGCAGCCCCGGTACGACATCAACGCCCCGGACCTGTACATACCCTCCATGGGGTACGTCACGTACGTGCTGCTGGCCGGCTTCATGTTAGGTCTTCAGCACAGATTCTCACCGGAACAAATAGGCATCCAGGCGTCCAGTGCCCTGGCCTACATTATCTTCGAGATGCTGCTGTACCTCGTCACGCTGTACGTCACCAACACCAGCACCAGCCTCAAGACCCTGGACCTGCTGGCGTACTCCGGCTACAAGTACACCGTGATGATCTCCAGCCTGCTGGCCGGCCTGCTCGCGGGCAGGACGGGCTACTACTGCGGCCTGCTCTACAGCAGCTGCGCTTTGTCTTACTTTTTGGTGAAGACGCTTCGTCTCCAGTTGCTGTCGGGGTCTCAGGGTCCGGAGCAGCCCTCGTACGGGTTCCCCAACCCTCCCTACGCCGCCAACCCTTACTCCGACGCCTGGGACAAACCAACACCAGGAGGCACCAAGCGAAGGGTCTACTTCTTGCTGTTCGTGGCGATAACACAGCCGCTGCTGTGCTGGTGGCTGACTTACCATCTCGTGGCGTCGCCGCCTGGCGAGGGCGCGGGCCCGGCGCGATAG

Protein

MNFNASRNVGPSGAIRKAKRVSDVAAMGTPAPNPAFSPTAYSPGYAPTGPPPPYQESFQLDANQDFNTHAPAGNFGFAGGFPSPMTSPAQISSMLQQPVVQDMAIQYGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQDTPVQPRYDINAPDLYIPSMGYVTYVLLAGFMLGLQHRFSPEQIGIQASSALAYIIFEMLLYLVTLYVTNTSTSLKTLDLLAYSGYKYTVMISSLLAGLLAGRTGYYCGLLYSSCALSYFLVKTLRLQLLSGSQGPEQPSYGFPNPPYAANPYSDAWDKPTPGGTKRRVYFLLFVAITQPLLCWWLTYHLVASPPGEGAGPAR

Uniprot

H9IU63   A0A194RHL2   A0A2H1W5X4   A0A194PHE7   A0A3S2NKD0   A0A212EHB2   + More
A0A1E1WQL9   A0A2W1BYE8   I4DP89   D6WTI1   V5GPC0   A0A1L8D967   A0A1L8D949   N6TID4   A0A067RD41   A0A1Q3FBX3   U5EVY5   A0A1W4XRD5   A0A1B0CS20   A0A023EPS3   B0XHY4   Q1HQJ2   A0A182MN20   T1EAH5   A0A182VYE2   A0A182XWI1   A0A182LQQ1   A0A2J7QBS7   A0A2J7QBT5   T1DRV1   A0A2J7QBS0   A0A336MTE9   A0A182FQN7   A0A182WZI9   Q7QK67   A0A0K8U137   A0A0K8W6F8   A0A2M4AI20   A0A2M4BR45   A0A0K8TMF3   A0A0A1XN97   W5J4W1   A0A0A1WEZ0   A0A182TD98   A0A034WEU8   A0A034WGE6   A0A182HZN8   A0A1A9XDJ3   A0A1B0C4H0   A0A1A9ZGF1   W8BUF6   W8C161   A0A182PEB3   A0A182IM96   A0A2M3Z6T9   A0A2M3ZHY3   D3TMP1   Q8MTA2   Q8IMR3   A0A336MJU1   H8F4V3   Q6NNZ6   Q9VBC5   Q8IMR4   A0A1A9WSG8   A0A336MM83   A0A182Q771   A0A182NMW1   A0A0L0CQF8   A0A1B6E7H8   B4NKN4   A0A1Y1L7J5   A0A1Y1L7H1   A0A336MDY0   A0A0M4EJ72   A0A1I8Q7P3   T1JB28   A0A1I8Q7S5   A0A0Q9WTC3   A0A0P4WE48   B4LWB2   A0A0Q9WHG8   T1PCH3   A0A0P9CAS5   A0A1I8MJV6   A0A1B6IJP9   A0A0Q9X2V1   B3M3C8   A0A0Q9X2G0   B4K8Y8   A0A0P8YNK6   A0A1I8MJW2   A0A1W4VM29   A0A1W4VLC4   A0A1W4V8Y5   A0A3B0JL82   A0A3B0K004   B4JY65   A0A3B0K7W4   A0A0R1E554  

Pubmed

19121390    26354079    22118469    28756777    22651552    18362917    + More
19820115    23537049    24845553    24945155    17204158    17510324    25244985    20966253    12364791    14747013    17210077    26369729    25830018    20920257    23761445    25348373    24495485    20353571    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    17994087    28004739    25315136    17550304   

EMBL

BABH01034187    KQ460205    KPJ17057.1    ODYU01006241    SOQ47904.1    KQ459604    + More
KPI92134.1    RSAL01000057    RVE49782.1    AGBW02014918    OWR40868.1    GDQN01001754    JAT89300.1    KZ149945    PZC76793.1    AK403473    BAM19729.1    KQ971354    EFA07180.1    GALX01002512    JAB65954.1    GFDF01011086    JAV02998.1    GFDF01011085    JAV02999.1    APGK01025209    KB740577    KB631756    ENN80184.1    ERL85820.1    KK852577    KDR20942.1    GFDL01009988    JAV25057.1    GANO01003201    JAB56670.1    AJWK01025575    GAPW01002071    JAC11527.1    DS233230    EDS28830.1    DQ440452    CH477345    ABF18485.1    EAT43008.1    AXCM01004865    GAMD01000407    JAB01184.1    NEVH01016296    PNF26032.1    PNF26035.1    GAMD01000490    JAB01101.1    PNF26034.1    UFQT01001170    SSX29248.1    AAAB01008799    EAA03725.5    GDHF01031855    JAI20459.1    GDHF01005556    JAI46758.1    GGFK01006937    MBW40258.1    GGFJ01006351    MBW55492.1    GDAI01002056    JAI15547.1    GBXI01001796    JAD12496.1    ADMH02002134    ETN58433.1    GBXI01016718    JAC97573.1    GAKP01006110    JAC52842.1    GAKP01006109    JAC52843.1    APCN01001988    JXJN01025444    GAMC01003713    JAC02843.1    GAMC01003712    JAC02844.1    GGFM01003463    MBW24214.1    GGFM01007287    MBW28038.1    EZ422693    ADD18969.1    AY118289    AAM48318.1    AE014297    BT044376    AAN14084.1    ACH92441.1    SSX29249.1    BT133343    AFF18559.1    BT011135    AAR82802.1    BT133010    AAF56617.1    AEX66196.1    AAN14083.1    UFQT01000773    SSX27128.1    AXCN02001551    JRES01000062    KNC34476.1    GEDC01003406    JAS33892.1    CH964272    EDW84095.2    GEZM01062522    GEZM01062515    JAV69663.1    GEZM01062526    GEZM01062517    JAV69629.1    SSX27129.1    CP012526    ALC46896.1    JH432008    CH940650    KRF83381.1    GDRN01065133    JAI64729.1    EDW67646.1    KRF83382.1    KA645643    AFP60272.1    CH902617    KPU80345.1    GECU01020560    JAS87146.1    CH933806    KRG02221.1    EDV43589.1    KRG02220.1    EDW16585.1    KPU80344.1    OUUW01000005    SPP81092.1    SPP81090.1    CH916377    EDV90627.1    SPP81091.1    CM000160    KRK04374.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000283053    UP000007151    UP000007266    + More
UP000019118    UP000030742    UP000027135    UP000192223    UP000092461    UP000002320    UP000008820    UP000075883    UP000075920    UP000076408    UP000075882    UP000235965    UP000069272    UP000076407    UP000007062    UP000000673    UP000075902    UP000075840    UP000092443    UP000092460    UP000092445    UP000075885    UP000075880    UP000000803    UP000091820    UP000075886    UP000075884    UP000037069    UP000007798    UP000092553    UP000095300    UP000008792    UP000007801    UP000095301    UP000009192    UP000192221    UP000268350    UP000001070    UP000002282   

PRIDE

H9IU63    Q8MTA2    Q8IMR3    H8F4V3    Q6NNZ6    Q9VBC5    + More
Q8IMR4   

Pfam

PF03878   YIF1        + More
PF12335   SBF2

Interpro

IPR005578   Yif1_fam        + More
IPR039872   KIAA0513       
IPR022096   SBF1/SBF2       

ProteinModelPortal

H9IU63   A0A194RHL2   A0A2H1W5X4   A0A194PHE7   A0A3S2NKD0   A0A212EHB2   + More
A0A1E1WQL9   A0A2W1BYE8   I4DP89   D6WTI1   V5GPC0   A0A1L8D967   A0A1L8D949   N6TID4   A0A067RD41   A0A1Q3FBX3   U5EVY5   A0A1W4XRD5   A0A1B0CS20   A0A023EPS3   B0XHY4   Q1HQJ2   A0A182MN20   T1EAH5   A0A182VYE2   A0A182XWI1   A0A182LQQ1   A0A2J7QBS7   A0A2J7QBT5   T1DRV1   A0A2J7QBS0   A0A336MTE9   A0A182FQN7   A0A182WZI9   Q7QK67   A0A0K8U137   A0A0K8W6F8   A0A2M4AI20   A0A2M4BR45   A0A0K8TMF3   A0A0A1XN97   W5J4W1   A0A0A1WEZ0   A0A182TD98   A0A034WEU8   A0A034WGE6   A0A182HZN8   A0A1A9XDJ3   A0A1B0C4H0   A0A1A9ZGF1   W8BUF6   W8C161   A0A182PEB3   A0A182IM96   A0A2M3Z6T9   A0A2M3ZHY3   D3TMP1   Q8MTA2   Q8IMR3   A0A336MJU1   H8F4V3   Q6NNZ6   Q9VBC5   Q8IMR4   A0A1A9WSG8   A0A336MM83   A0A182Q771   A0A182NMW1   A0A0L0CQF8   A0A1B6E7H8   B4NKN4   A0A1Y1L7J5   A0A1Y1L7H1   A0A336MDY0   A0A0M4EJ72   A0A1I8Q7P3   T1JB28   A0A1I8Q7S5   A0A0Q9WTC3   A0A0P4WE48   B4LWB2   A0A0Q9WHG8   T1PCH3   A0A0P9CAS5   A0A1I8MJV6   A0A1B6IJP9   A0A0Q9X2V1   B3M3C8   A0A0Q9X2G0   B4K8Y8   A0A0P8YNK6   A0A1I8MJW2   A0A1W4VM29   A0A1W4VLC4   A0A1W4V8Y5   A0A3B0JL82   A0A3B0K004   B4JY65   A0A3B0K7W4   A0A0R1E554  

KEGG

101744076    K20362 protein transport protein YIF1 | (RefSeq) protein YIF1A

GO

GO:0016021   GO:0030173   GO:0005789   GO:0030134   GO:0005793   GO:0009306   GO:0000902   GO:0005801   GO:1905808   GO:0070971   GO:0006888  

PANTHER

PTHR14083   PTHR13663  

Length:

368

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

94.48418

Exp number, first 60 AAs:

0.01908

Total prob of N-in:

0.50628

outside

1  -  180

TMhelix

181  -  200

inside

201  -  212

TMhelix

213  -  235

outside

236  -  244

TMhelix

245  -  267

inside

268  -  333

TMhelix

334  -  356

outside

357  -  368

 

 

Pi

319.808884

Theta

212.545065

Tajima's D

1.639851

CLR

0.058184

CSRT

0.817909104544773

Interpretation

Uncertain