Gene

KWMTBOMO14913

Pre Gene Modal

BGIBMGA000787

Annotation

PREDICTED:_paired_box_protein_Pax-1_[Papilio_polytes]

Location

Bomo_Chr25(+):324543-326127      View in EpiBrowser

Transcription factor

PAX

Location in the cell

Cytoplasmic   Reliability : 1.016 Mitochondrial   Reliability : 1.328 Nuclear   Reliability : 1.177

CDS

ATGGGCAATATAGGCGTGGGCGGCTCGGGTGGTCAACAGTATGGAGAAGTCAACCAGTTGGGCGGAGTGTTTGTCAATGGAAGACCTCTGCCCAATGCTGTGAGATTACGGATTGTGGAACTAGCGCAACTTGGAATCAGGCCTTGCGACATTAGCAGACAGCTGAGGGTCTCGCACGGATGCGTGTCCAAAATACTGGCCAGATACCACGAGACCGGGTCCATACTCCCCGGTGCTATCGGAGGATCCAAGCCGCGGGTCACTACTCCGAAGGTGGTTTCGTACATAAAGCAGTTGAAAGCGAAAGACCCTGGTATATTTGCGTGGGAGATCCGAGACCGGCTGTTAGCTGACGGGGTTTGTGACAAGTACAATGTGCCCTCAGTGTCTTCTATATCGAGGATATTGCGGAATAAGCTAGGCGGTGGGGCCTTGTAA

Protein

MGNIGVGGSGGQQYGEVNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKLGGGAL

Uniprot

A0A2W1BVW2   A0A194RM58   A0A194PM12   A0A2H1W1H7   H9IU57   A0A212EGZ4   + More
E9IJ40   A0A151X0R0   A0A2A3EEE9   A0A0L7RID0   E2B0B9   A0A154P624   A0A088AM06   A0A232ETR9   A0A151HXN7   A0A195C1F1   E9H4F4   A0A0J7KPM3   K7IQF4   T1J2R8   A0A026WUC8   A0A2J7QRZ8   A0A1B6DX14   A0A1Y1NGH4   A0A0P6I7H6   A0A158NJR3   C7EX12   A0A0P6AX49   A0A0C9Q600   D6WR50   A0A1W4XFN1   N6TNK0   A0A0L7L4A3   U4UBI9   E0VYJ2   A0A0B5KU90   A0A0K8SH82   A0A0A9W470   A0A146MGX1   A0A210Q9V4   A0A182YH05   A0A1B6L2S5   A0A0S7MDL9   A0A182LRZ6   A0A1S3J782   A0A182W405   A0A1S3J5W6   A0A182S6J2   A0A091P4M5   U6CZG1   A0A182UBQ5   Q2VL37   A0A091QLK8   A0A182WY60   A0A084VAV4   A0A182HIL0   A0A182PFD2   A0A132A842   A0A1B6IDD2   M4PWR0   H0X8E8   M4Q7W9   Q2VL39   Q2VL41   Q2VL38   Q2VL40   A0A182ULX0   M4PZJ0   Q2VL48   Q2VL45   Q2VL46   Q2VL49   Q2VL47   Q2VL43   E9KY40   R0LH92   G1K9H9   F5HJR8   Q2VL42   A0A218VDZ4   Q2VL44   A0A091VZ84   A0A093SGP0   A0A091HLM0   M4PZH8   A0A093GMP9   A0A091GA37   A0A182N040   A0A091F583   K1R7L8   M4PZH1   A0A1B0GIN3   A0A096M3J9   A0A087XBD5   Q9PSA1   A0A2C9JUX8   B4LYP2   A0A1B0DL58   K7FVX7   S4U7S5  

Pubmed

28756777    26354079    19121390    22118469    21282665    20798317    + More
28648823    21292972    20075255    24508170    30249741    28004739    21347285    18362917    19820115    23537049    26227816    20566863    25627710    25401762    26823975    28812685    25244985    16326750    24438588    26555130    23469040    21111400    12364791    14747013    17210077    22992520    7647370    15562597    17994087    17381049   

EMBL

KZ149945    PZC76786.1    KQ460205    KPJ17066.1    KQ459604    KPI92145.1    + More
ODYU01005693    SOQ46806.1    BABH01034165    AGBW02014998    OWR40744.1    GL763626    EFZ19418.1    KQ982617    KYQ53810.1    KZ288282    PBC29546.1    KQ414584    KOC70589.1    GL444493    EFN60871.1    KQ434825    KZC07385.1    NNAY01002238    OXU21753.1    KQ976747    KYM75319.1    KQ978350    KYM94704.1    GL732591    EFX73373.1    LBMM01004544    KMQ92308.1    JH431807    KK107119    QOIP01000009    EZA58704.1    RLU18900.1    NEVH01011882    PNF31345.1    GEDC01007129    JAS30169.1    GEZM01002949    JAV97043.1    GDIQ01025306    JAN69431.1    ADTU01017937    ADTU01017938    GQ301536    ACT79976.1    GDIP01024153    JAM79562.1    GBYB01009558    JAG79325.1    KQ971354    EFA07436.2    APGK01057859    APGK01057860    APGK01057861    APGK01057862    KB741282    ENN70830.1    JTDY01003054    KOB70240.1    KB632233    ERL90407.1    DS235845    EEB18448.1    KJ957830    AJG44466.1    GBRD01013691    JAG52135.1    GBHO01040362    JAG03242.1    GDHC01000633    JAQ17996.1    NEDP02004483    OWF45508.1    GEBQ01021945    JAT18032.1    GBYX01066287    JAO99930.1    AXCM01010869    KK668444    KFQ02942.1    HAAF01003197    CCP75023.1    DQ067556    AAZ39853.1    KK800520    KFQ28405.1    ATLV01004493    KE524215    KFB35098.1    APCN01003999    JXLN01011331    KPM07114.1    GECU01022758    JAS84948.1    KC549941    AGH14164.1    AAQR03086031    KC549939    AGH14161.1    DQ067554    AAZ39851.1    DQ067552    AAZ39849.1    DQ067555    AAZ39852.1    DQ067553    AAZ39850.1    KC549943    AGH14167.1    DQ067545    AAZ39842.1    DQ067548    AAZ39845.1    DQ067547    AAZ39844.1    DQ067544    AAZ39841.1    DQ067546    AAZ39843.1    DQ067550    AAZ39847.1    HM214021    HM214022    HM214023    HM214024    HM214025    HM214026    HM214027    HM214028    HM214029    HM214030    HM214031    HM214032    HM214033    HM214034    HM214035    HM214036    HM214037    HM214038    HM214039    HM214040    HM214041    HM214042    HM214043    HM214044    ADR64954.1    KB742730    EOB05014.1    AAAB01008846    EGK96529.1    DQ067551    AAZ39848.1    MUZQ01000005    OWK64146.1    DQ067549    AAZ39846.1    KL411498    KFR08100.1    KL671375    KFW81899.1    KL217612    KFO97173.1    KC549931    AGH14152.1    KL216147    KFV68079.1    KL447879    KFO78201.1    KK719449    KFO63719.1    JH816175    EKC39574.1    KC549922    AGH14142.1    AJWK01015109    AJWK01015110    AJWK01015111    AJWK01015112    AJWK01015113    AJWK01015114    AYCK01003358    AYCK01003359    X82443    CAC16141.1    CH940650    EDW68062.2    AJVK01069398    AGCU01049873    AGCU01049874    AGCU01049875    JX233618    AGI43624.1   

Proteomes

UP000053240    UP000053268    UP000005204    UP000007151    UP000075809    UP000242457    + More
UP000053825    UP000000311    UP000076502    UP000005203    UP000215335    UP000078540    UP000078542    UP000000305    UP000036403    UP000002358    UP000053097    UP000279307    UP000235965    UP000005205    UP000007266    UP000192223    UP000019118    UP000037510    UP000030742    UP000009046    UP000242188    UP000076408    UP000075883    UP000085678    UP000075920    UP000075901    UP000075902    UP000076407    UP000030765    UP000075840    UP000075885    UP000005225    UP000075903    UP000001646    UP000007062    UP000197619    UP000053283    UP000053258    UP000054308    UP000053875    UP000053760    UP000075884    UP000052976    UP000005408    UP000092461    UP000028760    UP000076420    UP000008792    UP000092462    UP000007267   

PRIDE

H9IU57    E9KY40   

Pfam

PF00292   PAX

Interpro

IPR001523   Paired_dom        + More
IPR009057   Homeobox-like_sf       
IPR036388   WH-like_DNA-bd_sf       
IPR033206   PAX1       
IPR033204   PAX9       

SUPFAM

SSF46689   SSF46689       

Gene 3D

1.10.10.10    

CDD

cd00131  PAX

ProteinModelPortal

A0A2W1BVW2   A0A194RM58   A0A194PM12   A0A2H1W1H7   H9IU57   A0A212EGZ4   + More
E9IJ40   A0A151X0R0   A0A2A3EEE9   A0A0L7RID0   E2B0B9   A0A154P624   A0A088AM06   A0A232ETR9   A0A151HXN7   A0A195C1F1   E9H4F4   A0A0J7KPM3   K7IQF4   T1J2R8   A0A026WUC8   A0A2J7QRZ8   A0A1B6DX14   A0A1Y1NGH4   A0A0P6I7H6   A0A158NJR3   C7EX12   A0A0P6AX49   A0A0C9Q600   D6WR50   A0A1W4XFN1   N6TNK0   A0A0L7L4A3   U4UBI9   E0VYJ2   A0A0B5KU90   A0A0K8SH82   A0A0A9W470   A0A146MGX1   A0A210Q9V4   A0A182YH05   A0A1B6L2S5   A0A0S7MDL9   A0A182LRZ6   A0A1S3J782   A0A182W405   A0A1S3J5W6   A0A182S6J2   A0A091P4M5   U6CZG1   A0A182UBQ5   Q2VL37   A0A091QLK8   A0A182WY60   A0A084VAV4   A0A182HIL0   A0A182PFD2   A0A132A842   A0A1B6IDD2   M4PWR0   H0X8E8   M4Q7W9   Q2VL39   Q2VL41   Q2VL38   Q2VL40   A0A182ULX0   M4PZJ0   Q2VL48   Q2VL45   Q2VL46   Q2VL49   Q2VL47   Q2VL43   E9KY40   R0LH92   G1K9H9   F5HJR8   Q2VL42   A0A218VDZ4   Q2VL44   A0A091VZ84   A0A093SGP0   A0A091HLM0   M4PZH8   A0A093GMP9   A0A091GA37   A0A182N040   A0A091F583   K1R7L8   M4PZH1   A0A1B0GIN3   A0A096M3J9   A0A087XBD5   Q9PSA1   A0A2C9JUX8   B4LYP2   A0A1B0DL58   K7FVX7   S4U7S5  

PDB

1MDM     E-value=1.75402e-47,     Score=471

KEGG

101743636    K09382 paired box protein 1/9 | (RefSeq) paired box protein Pax-1

GO

GO:0007275   GO:0003677   GO:0003700   GO:0005634   GO:0009887   GO:0071363   GO:0042481   GO:0000977   GO:0001228   GO:0007492   GO:0045892   GO:0060325   GO:0042476   GO:0048813   GO:0007526   GO:0006355   GO:0007264   GO:0006468   GO:0004672   GO:0004697   GO:0007154   GO:0016020   GO:0005112   GO:0015930  

PANTHER

PTHR45636:SF15   PTHR45636:SF13  

Subcellular location

Nucleus  

Length:

145

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00143

Exp number, first 60 AAs:

0.00112

Total prob of N-in:

0.03910

outside

1  -  145

 

 

Pi

237.646966

Theta

205.704778

Tajima's D

0.48952

CLR

0.312819

CSRT

0.512224388780561

Interpretation

Uncertain