Silkworm Genome Informatics Database

Gene

KWMTBOMO14901

Annotation

PREDICTED:_transcription_elongation_regulator_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr24(-):17293132-17301610 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.825

CDS

ATGGAAGATGGTTATATGGAACAGCAGGACGTGTCGTTGAACGAAGTTAGCCGAAGCGACGCACCCGAAGCAGAGGCTGGGAAGGACTTCGCCGAATACACTGGTTATGAAGAAGGTTACGAAGAGGAAGACGGCGGTAACAACTTTCGCGGTAATCGGGGCCGTGGGAGCTTCAGAAGCCGTGGTCGCGGCCCCCCGCCTGGTTGGATGAACGGTCCGCCGCCGCCTATGCGATTTCGTGGACGCGGCTACGGACCCACAGGACCTCCAATGCGCGGACGAGGCTTCTTCAGAGGACGGGGCGGACCCCGTTTCGGACCCAATGGACCGAATTTCGACAACAATTGGGGACCGATGGGTCCCCCGCCTCCCAACATGATGTGTCCGCCGCCCTTCGGCCCCCCTCCCGGCATGATGCCTCCCGGGGGGCCGATGGGTCCCCCTCCTAATATGATGAATCAGCCCCCATATGGAGGACCACCTGGTATGCCGCCCCCTGGTATGAACCCTGAAGTATGGGTGGAAACGAAGACAGATGAAGGCAAATCATACTATTACCATGCTCGGTCCCGGGAAACTACATGGACCAGGCCAGTGGAGGGACCGAACTGCAAGGTCATCACACACGGTGAGATGGAGATACTGGTAGCTTCAGGACAAATCCCCCAAATATCGGCACAAGGGGTCGGCATGAACGGTCCCATGGGCCAGGCGCCGCTCGTGATGCCCAACGGCATGATGCTGCCCGGCGCGCAGCACCAGTACATGGGGCCGCCGCCCTGGGGGAAGGACGATAAAGACAAAGCCTCTGAGTCTGTAGTGAGCAGTATGACTGATAACGATGAAATGCCACCGGGAGAAGCAGTCCCTGGACAGCAGCAAACCAATGGTTACAACGCATACCAGCAGGGAGAGTCATACGGGCCCCCGGGCTGGCCGGCCTGGGGCTGGCCTCCCGCCGTGAACAACCCCAGCAACCCCGAAGCGGCCCCGGGCGCGTGGCCTAGCAGCGGCGCCGCGCCGCAGTGCGAGCCCGCAGAGCAGCCCCGGGCGCCGCCCACCGTGCCCATGCCCAAGAAGGAAACCGTTCGTATACACATTACTTACGTCTTTTTTTTTTATTGCTTTGATGGATGGACGAGCTCACAGCTCACCTGGCGTTAA

Protein

MEDGYMEQQDVSLNEVSRSDAPEAEAGKDFAEYTGYEEGYEEEDGGNNFRGNRGRGSFRSRGRGPPPGWMNGPPPPMRFRGRGYGPTGPPMRGRGFFRGRGGPRFGPNGPNFDNNWGPMGPPPPNMMCPPPFGPPPGMMPPGGPMGPPPNMMNQPPYGGPPGMPPPGMNPEVWVETKTDEGKSYYYHARSRETTWTRPVEGPNCKVITHGEMEILVASGQIPQISAQGVGMNGPMGQAPLVMPNGMMLPGAQHQYMGPPPWGKDDKDKASESVVSSMTDNDEMPPGEAVPGQQQTNGYNAYQQGESYGPPGWPAWGWPPAVNNPSNPEAAPGAWPSSGAAPQCEPAEQPRAPPTVPMPKKETVRIHITYVFFFYCFDGWTSSQLTWR

Uniprot

NA

ProteinModelPortal

NA

PDB

2YSI E-value=0.000599597, Score=102

KEGG

101740118 K12824 transcription elongation regulator 1 | (RefSeq) transcription elongation regulator 1

PATHWAY

03040 Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005515 GO:0008270 GO:0046872 GO:0003676 GO:0016701 GO:0006355 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Length:

387

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.85256

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02767

outside

1 - 387

Pi

220.629283

Theta

194.310873

Tajima's D

0.597348

CLR

1.123374

CSRT

0.541922903854807

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics