Gene

KWMTBOMO14899

Annotation

PREDICTED:_transcription_elongation_regulator_1-like?_partial_[Bombyx_mori]

Location

Bomo_Chr24(-):17278542-17283320      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.541

CDS

ATGCTGCGCGAGAAGAACGTCTCCGCCTTCAGCACCTGGGACAAGGAGCTGCACAAGATCGTCTTCGAGCCGCGCTACCTCGTGCTCAACTGCAAGGAGCGGCGCCAGATATTTAATCAGTACGTGACAGAACGCGCCGAGGAAGAGAGGAAGGAGAAGAAAAACCGATTGCTAGCAAAGAAGGCGAACTTCAAGCAACTCTTGGACGAAGCCAAGCTTCATACAAAGTCCTCGTTCCTGGACTTCTCCTCCAAGCACGGCCGAGACGAGCGGTTCAAGGCGATAGAGAAGCCGCGGGACAGGGAGGTATACTTCAACGAGTACCTCGCCGAGATCAGGAAGAGGGACAAGGAGGAGAAGGAGCGGAAGAGAGAACAGGCTAAACTGGAATTCATAGCGCTGCTCAAAGAGAAGTCGGTGGACCGCCACGCCAGGTGGGTCGATGTCAAGAAGAAGCTGGACTCGGAGGCGCGGTACAAGGCCGTGGAGACCAGCGGCCTGCGCGAGGACTACTTCCGGGAGTACTGCAAGCTCGTCAAGGAGGAGAGGAAGAAAGAAAAGGACGGGAAAGACAAGGGTGTTAGTAAGAAAGAGAAAAAAGACAAAGAACGCGATAAGGAGAAGAAGAAGAAAGAGAAGGGAGAGGTGAGTCGTACGCGTGCGTATGTGTCCCATCCGAGTTGTGACTTGTAG

Protein

MLREKNVSAFSTWDKELHKIVFEPRYLVLNCKERRQIFNQYVTERAEEERKEKKNRLLAKKANFKQLLDEAKLHTKSSFLDFSSKHGRDERFKAIEKPRDREVYFNEYLAEIRKRDKEEKERKREQAKLEFIALLKEKSVDRHARWVDVKKKLDSEARYKAVETSGLREDYFREYCKLVKEERKKEKDGKDKGVSKKEKKDKERDKEKKKKEKGEVSRTRAYVSHPSCDL

Uniprot

A0A1E1WDU0   A0A3S2L942   A0A2A4K6J8   S4PMU6   A0A212EQ08   V5GWX2   + More
A0A2P8ZER3   A0A1Y1K188   A0A2J7QCK5   A0A2J7QCM9   A0A2J7QCL5   A0A2J7QCL2   A0A1B6DZ77   A0A067RJJ6   A0A139WNL0   A0A0T6BC27   R7TBZ8   U5EVP3   A0A3L8D3M4   A0A1B6GNX3   A0A2R7VZ16   A0A026WXB4   E9J2D2   E2C8S8   V9ICJ3   A0A1B6G3D6   A0A2A3EM71   A0A087ZZH2   J9K0K3   K7J5I1   A0A023F221   A0A069DXB0   A0A2S2R4W3   A0A0P4VY59   A0A1B6K0X2   A0A210QC48   A0A0L7QNG4   A0A154PQ86   A0A2T7P7L4   A0A0V0G5I0   A0A1B6K274   A0A224XHS9   A0A232EVM4   A0A1W4X6X9   A0A0A9Z4R5   K1PX56   A0A0K8T0Z6   A0A0A9XR67   N6TYY6   A0A0K8VXL8   A0A1B0CG15   N6TSQ2   A0A1S8X4X2   F4X784   A0A1S3IML5   A0A1S3ING5   A0A158NDG1   C3Y4A7   A0A0A1WRP2   A0A3R7ESQ9   A0A1B6MFV8   G7YE87   A0A1B6KCA6   A0A183QK49   A0A183JWA6   G4LV18   A0A0L0BWR7   A0A0L8ICI2   A0A0L8IBB3   A0A1B0C3G9   A0A0L8IB45   A0A0L8IBG0   A0A034W1G8   A0A1A9VBD7   A0A1A9Y7F5   A0A1I8NIN5   A0A1B0G5G9   A0A1I8NIM8   A0A1A9WJE7   A0A1A9ZNU2   A0A1L8DIB5   A0A183L8E4   Q0JXE6   V4A902   T1ELW4   A0A3P8DX71   A0A183P3R0   A0A2H1BUV8   A0A1I8PUG3   A0A0M4EQ20   Q5D9W6   A0A310SNF2   A0A3S3P2R3   A0A2C9JU78   A0A183VTC5   Q2PCS9   A0A1I8HJF4   V9KB23   A0A0P8YFE0  

Pubmed

23622113    22118469    29403074    28004739    24845553    18362917    + More
19820115    23254933    30249741    24508170    21282665    20798317    20075255    25474469    26334808    27129103    28812685    28648823    25401762    22992520    23537049    21719571    21347285    18563158    25830018    22023798    22253936    26108605    25348373    25315136    16904200    16617374    15562597    26392545    24402279    17994087   

EMBL

GDQN01005947    JAT85107.1    RSAL01000437    RVE41720.1    NWSH01000116    PCG79393.1    + More
GAIX01003370    JAA89190.1    AGBW02013337    OWR43582.1    GALX01003683    JAB64783.1    PYGN01000078    PSN54986.1    GEZM01096053    JAV55183.1    NEVH01016289    PNF26321.1    PNF26325.1    PNF26324.1    PNF26326.1    GEDC01006323    JAS30975.1    KK852643    KDR19568.1    KQ971311    KYB29457.1    LJIG01002057    KRT84883.1    AMQN01014029    KB310685    ELT91022.1    GANO01000930    JAB58941.1    QOIP01000014    RLU14826.1    GECZ01005716    JAS64053.1    KK854182    PTY12712.1    KK107070    EZA60695.1    GL767845    EFZ13028.1    GL453694    EFN75645.1    JR039811    AEY58853.1    GECZ01012814    JAS56955.1    KZ288212    PBC32818.1    ABLF02035484    GBBI01003738    JAC14974.1    GBGD01000438    JAC88451.1    GGMS01015832    MBY85035.1    GDKW01001038    JAI55557.1    GECU01002622    JAT05085.1    NEDP02004212    OWF46304.1    KQ414855    KOC60104.1    KQ435034    KZC14049.1    PZQS01000005    PVD29410.1    GECL01002879    JAP03245.1    GECU01002137    JAT05570.1    GFTR01008733    JAW07693.1    NNAY01001988    OXU22375.1    GBHO01006804    JAG36800.1    JH819121    EKC23634.1    GBRD01006637    JAG59184.1    GBHO01021513    JAG22091.1    APGK01003750    APGK01003751    APGK01003752    KB735412    ENN83378.1    GDHF01008710    JAI43604.1    AJWK01010639    APGK01002399    APGK01002400    APGK01002401    APGK01011261    APGK01011262    APGK01011263    APGK01023260    APGK01023261    APGK01023262    KB740478    KB738424    KB734770    ENN80576.1    ENN82608.1    ENN83509.1    KV892005    OON21748.1    GL888828    EGI57696.1    ADTU01012473    GG666484    EEN65133.1    GBXI01012785    JAD01507.1    NIRI01001987    RJW64218.1    GEBQ01005192    JAT34785.1    DF143132    GAA51270.1    GEBQ01030894    JAT09083.1    UZAK01032225    VDP24458.1    CABG01000005    CCD58760.1    JRES01001227    KNC24473.1    KQ416087    KOF98735.1    KOF98732.1    JXJN01024951    KOF98733.1    KOF98734.1    GAKP01011329    JAC47623.1    CCAG010000321    GFDF01007901    JAV06183.1    UZAI01000011    VDO26527.1    AM269755    CAK32500.1    KB200702    ESP00419.1    AMQM01002920    KB095959    ESO09267.1    UZAL01029351    VDP47600.1    KZ434623    PIS78918.1    CP012526    ALC47014.1    AY815658    AAW27390.1    KQ761906    OAD56459.1    NCKU01003859    RWS06816.1    UZAO01051317    VDP99610.1    AJ630269    CAF34437.1    JW862567    AFO95084.1    CH902617    KPU80110.1   

Proteomes

UP000283053    UP000218220    UP000007151    UP000245037    UP000235965    UP000027135    + More
UP000007266    UP000014760    UP000279307    UP000053097    UP000008237    UP000242457    UP000005203    UP000007819    UP000002358    UP000242188    UP000053825    UP000076502    UP000245119    UP000215335    UP000192223    UP000005408    UP000019118    UP000092461    UP000007755    UP000085678    UP000005205    UP000001554    UP000050792    UP000050789    UP000008854    UP000037069    UP000053454    UP000092460    UP000078200    UP000092443    UP000095301    UP000092444    UP000091820    UP000092445    UP000050790    UP000277204    UP000030746    UP000015101    UP000050791    UP000095300    UP000092553    UP000285301    UP000076420    UP000050795    UP000095280    UP000007801   

Pfam

PF01846   FF        + More
PF00397   WW
PF00400   WD40
PF01390   SEA

Interpro

IPR002713   FF_domain        + More
IPR036517   FF_domain_sf       
IPR036020   WW_dom_sf       
IPR001202   WW_dom       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR000082   SEA_dom       
IPR036364   SEA_dom_sf       
IPR036691   Endo/exonu/phosph_ase_sf       

SUPFAM

SSF81698   SSF81698        + More
SSF51045   SSF51045       
SSF50978   SSF50978       
SSF82671   SSF82671       
SSF56219   SSF56219       

Gene 3D

1.10.10.440     2.130.10.10     3.60.10.10    

CDD

cd00201  WW

ProteinModelPortal

A0A1E1WDU0   A0A3S2L942   A0A2A4K6J8   S4PMU6   A0A212EQ08   V5GWX2   + More
A0A2P8ZER3   A0A1Y1K188   A0A2J7QCK5   A0A2J7QCM9   A0A2J7QCL5   A0A2J7QCL2   A0A1B6DZ77   A0A067RJJ6   A0A139WNL0   A0A0T6BC27   R7TBZ8   U5EVP3   A0A3L8D3M4   A0A1B6GNX3   A0A2R7VZ16   A0A026WXB4   E9J2D2   E2C8S8   V9ICJ3   A0A1B6G3D6   A0A2A3EM71   A0A087ZZH2   J9K0K3   K7J5I1   A0A023F221   A0A069DXB0   A0A2S2R4W3   A0A0P4VY59   A0A1B6K0X2   A0A210QC48   A0A0L7QNG4   A0A154PQ86   A0A2T7P7L4   A0A0V0G5I0   A0A1B6K274   A0A224XHS9   A0A232EVM4   A0A1W4X6X9   A0A0A9Z4R5   K1PX56   A0A0K8T0Z6   A0A0A9XR67   N6TYY6   A0A0K8VXL8   A0A1B0CG15   N6TSQ2   A0A1S8X4X2   F4X784   A0A1S3IML5   A0A1S3ING5   A0A158NDG1   C3Y4A7   A0A0A1WRP2   A0A3R7ESQ9   A0A1B6MFV8   G7YE87   A0A1B6KCA6   A0A183QK49   A0A183JWA6   G4LV18   A0A0L0BWR7   A0A0L8ICI2   A0A0L8IBB3   A0A1B0C3G9   A0A0L8IB45   A0A0L8IBG0   A0A034W1G8   A0A1A9VBD7   A0A1A9Y7F5   A0A1I8NIN5   A0A1B0G5G9   A0A1I8NIM8   A0A1A9WJE7   A0A1A9ZNU2   A0A1L8DIB5   A0A183L8E4   Q0JXE6   V4A902   T1ELW4   A0A3P8DX71   A0A183P3R0   A0A2H1BUV8   A0A1I8PUG3   A0A0M4EQ20   Q5D9W6   A0A310SNF2   A0A3S3P2R3   A0A2C9JU78   A0A183VTC5   Q2PCS9   A0A1I8HJF4   V9KB23   A0A0P8YFE0  

PDB

3HFH     E-value=7.94932e-33,     Score=348

KEGG

101739300    K12824 transcription elongation regulator 1 | (RefSeq) transcription elongation regulator 1-like

GO

GO:0005634   GO:0016021  

Length:

230

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06111

outside

1  -  230

 

 

Pi

171.706273

Theta

154.451365

Tajima's D

0.018993

CLR

0.805261

CSRT

0.369731513424329

Interpretation

Uncertain