SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14890  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006217
Annotation
PREDICTED:_uncharacterized_protein_LOC105841540_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.598
 

Sequence

CDS
ATGCCACCTGTAGCAGCTGTGCCGGTCGATTTAGCTGTGAAAGTATTAAAAAAATACATAGCTTATTTTGCCGATGATGAATTTCCGCAATGGAAGTCAGAAGTCTGGAAAAAAATTGCAAACGATCCCGAGCTGGAGGGTAAATGGTCTATTGGTAGCGTTAGAACGAATGTTAGAGAAGATAGAAGAGGAATTTTGAGTGAAGCCAGAAGACAGTGTGGTATCACTTTCGAAATAGAGGGCTTGGATCAAGAGCAGGACGCGTTGCAGAATGACGACAGTAATCAGTTCACGGAAGTCATTTACGTCGAGGAAAAACGAAACAAATCCCCGAAGCACGGTTATTTGTCCGCGAAAACTCCGAAATCACTAATGTCTGCGGAAAACACGCCCAAAAAGAAATATAAACGCAATAACAGTGACTTGTCGGATGAAAGGTCTTTTAATAACTGCAACAGTGCAACCCCGGATCAGCTCGATTCGTTTTTATTGTACATTAAAAGTCTTTTATTGCAAACCTCCCCGGAATTGTCGATGAAATTGCAAATGGAAATCCTGAATGTGGTTATGAGAGCCAAGATAAACGAAGCCCAGAGTAATACGAGTCTCGAGTTAAGTTCCAACGGCGGTAAGTGTACTGAGGAAGCGGACAAAGTGATCGTTACAGAAGCAGCGGGTGCCAGCGCCAGTGGTGATAGTTAA
Protein
MPPVAAVPVDLAVKVLKKYIAYFADDEFPQWKSEVWKKIANDPELEGKWSIGSVRTNVREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKRNNSDLSDERSFNNCNSATPDQLDSFLLYIKSLLLQTSPELSMKLQMEILNVVMRAKINEAQSNTSLELSSNGGKCTEEADKVIVTEAAGASASGDS

Summary

Pfam
PF02892   zf-BED
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR003656   Znf_BED       
SUPFAM
SSF57667   SSF57667       
ProteinModelPortal

Ontologies

GO

Topology

Length:
233
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00215
Exp number, first 60 AAs:
0.00194
Total prob of N-in:
0.01460
outside
1  -  233
 
 

Population Genetic Test Statistics

Pi
185.702614
Theta
138.970318
Tajima's D
0.783444
CLR
18.29464
CSRT
0.5985200739963
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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