SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14884  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012171
Annotation
PREDICTED:_spectrin_beta_chain?_non-erythrocytic_5_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.52 Nuclear   Reliability : 1.993
 

Sequence

CDS
ATGCGCGTGGACGACCGCCGCGTGCGCAGCGTGCGGGCGCTCGCCGACAAGCTGCTCAACCAGGGCCCCACCCAGCAGGCGGCCACGGTGGCGCAGCGCCGCGACGCCTTCCTGTCGAAGTGGGCGGCCCTCAGCGGAGCCCTACAGCGGTACCGGGACAACCTGGCCGCCGCCCTCGAGATACATTCGTTTAACAGAGACGTGGAAGATACGGCGGAGCGTATCTCGAAGAAGGCGGCCATCTTCAGCAGCACGGAGCGCGGGCGCGAGCTGGAGGCCGCCCACCTCCTGCGCCGCAGCCACCTGGCGCGCGCCGCCGAGGCCTCCGCCGTGCTCACCAGGATCCAGGAGCTTCAGGCGGACGGCACCGACCTCGCCACCAGACACCCAGAGCACGCTAAAGATATAGAGGAGAGTCTCCGCAACTTACGCGAGGGTTGGGACAACCTGCAGAAGTTGGCTGAGAGGAGAACCGCGCTGCTAGATGCGGCTATCAACGAGCACAAATTCGATGAGAACTTAAAGGAATTGGAAGTCTGGGTGTCGGAAGCCGTGAAGCAGATGGACGAAGTCGAGGACCCGGAGACGATGGCAGAAGCCCAGGCCTTGCTGGAGCTTCACGACGAGAAGAAGGCCGAAATCGACAACCGCCAGAAAGCCATAGCCTCGCTGAAGAAGGAGGCCGAGCAAACGCCGGAGAAGCTTAAGAAAGTCGAACACCTCTCCACCACCCTCGACCAAGCCTGGCTGAAGAGGAAGGAGAATTTGACTCAGGCGCACCAGTTACAGCTACTGAAGGAGCAAGCGAGACAGATTGAAGACTGGCTCTCGACTAAGGAGGCCTTCTTGAACAATGACGACTTGGGAGAGAACTTGGACGCCGTCGAGACCCTCATCCGTAAGCACGCTGAGTTCAGCAAGCTGCTGGAGAGCCAGATCTGCCGCGTCGACGAGCTGAGGAAGAGCGCTGAGGGCTTGAAGGACCATCCTCTGAGGGTCAGGGTGGACGACGTCCTCCGCAGGGCCGACAGACTCAAGGAGTCGTGTAAGTCGCGCGGAGACGTGCTGCAGCAGTCCAGACAGCTGCACCAGTTCCTACAGGACCTGCAGCACGAGAGGGAGTGGATCGCGCTCAAGATGCAGATCGCCAACGACCAGAATTACAGAGAACTGTCTAACCTGCAATCCAAGATACAGAGGCACGCCGCCTTTGAATCAGAGCTTGCGGCCAACAAGGGACGCATCGACGACGTCGCCAACAGAGGGGAGGCGCTTATTGAATCAAAACATTACGCTTCTCAAGAGATAGCGAAACACGTCGAGGAGTTGGAGAACCAGTGGCAGGAATTGCAGACCGCCGCTAAGCTGCGTCACGATCGCCTGCAAGAAGCCTACCAGGCCAGGATCTTCTTCCGAGGGTTAGACGACTTCACCACCTGGCTGGACGAGGTGGAGGCGCAGCTGCTCAGCGAGGACCACGGCAAGGACCTGGCGTCGGTGACGGTCCTTCTGAAGCGACACTCGCGTCTCGAGCAGCAGGTGTCGAGCAAGGCCGACACGGCGACGCAATTGGCCGACACCGCCCGCCAGCTCGCCGACACCAAGCACTTCATGGCACAGGAGATACTGGACAGAGCCGACCAGGCCGTCAAACGCTACCGCCAGCTACAAGAGCCGATACAGATCAGAAGAGATAATCTAGAAGATGCCGAGCTTCTCCACCGCTGGGATAGAGACGCCGACGAGGAATTCGCCTGGTTACAGGAACGGGAGCCCTTGGTGCACCAGGAGGACGCCGGCTCCTCGCTCCCGGAGGCGCAAGCTCTGCTGAAGAAGCACCTGTCTCTGGAAGCTGAGCTTATCGCCAGAGAGCCCACGGTCAGCGCCGTGTGCGGGCGCGCGGCGCAGCTATCCCGGCGAGGTCACTTCGCGTCGGGCGCCCTAGAGGCCCGGGCGCGCGAGTTGTCGGCGCTCATGCGGTCCCTGCTGCACGGCGCCAGCGTGAGGACCGCGGCACTGCAACGACGGTGCGACGTGCTTATGCTGGTGTCGGAGGTAGCGGAGGCGCGCGCGTGGCTGGCGGCGCGGCGGGGGGCGGTGGGGGGCGGGGCGGGGGCCGAGCCGCGGGACGAGGGGGAGGCTCGCGGCCTCACGCGCCGCCTGCACGCCGCGCTCGCAGACCTCACGCCTTTCGACCTCACGCTGGACAAGCTGTACAAGGCCTGCGCCGCTCTGCAGGAGCGCGGCGCGGGGGACGCGGACGAGGTCAAGCGCAGCATCGACGAGCTGAAGGCGGAGCATGAGGACATGAAGCTGCTGGCGGCCAGGAGGCAGCAGCGCCTCGAGCAGAGCGTCAAGTACTTCAAGTTCGTGGAGGAGTGCGAGGAGGTCTCCGAATGGATCGGGGAGCAGATGGCGGCGGCCGCCAGCGAGGACTACGGGCTGGACGTGGAGCACGTAGACACGCTGCAGCAGGCCTTCGCGAGCTTTTTGACTCAACTTAACGCGAACGAGGGTCGCATCGAGTCCGTCTGCGAGGCCGGCAACGTGCTGCTGGAAGAGAACAACCCTGAGTCGGACAAGGTGAAGCAACGGGTCGACGACATCAGGGGTCTGTGGGAGGACCTCAAGGAACTAGCGGTGGCGCGGCAGGAGGCGCTGGCCGGGGCGCGGCAGGTGCACGAGTTCGACCGCAGCGCGGACGAGACGGGCGCGTGGATCGAGGAGAAGGAGCGCGCGCTCAGCGAGCTCAGCCCCAGCGCGCACGCGCAGCCCGCGCACGGACGCGCGCTGCACGCCCTGCGCGCCGACCTGCACGCCGTGCGCGACCAGCACCAACGTCTGCGGGACGAGGCCGCCAGGCTGGGGGAAACGTTCCCTGACGCCCGCGAGCACCTGTCTTCGAAGCTGGAGGACGTGACGGAAGCCCTGGACGCCCTGGAGCGGCGCGCCGAGCACTGCGCGCAGCAGCAGGAGCTGGCCAGCCACCTGCAGGCCTACTTCGGCACCTACCAGGAGCTCCTGGCGTGGTGCAGCGCCACGCTGGCCCGGGTGACGGCGCCCGAGCTGTCCCGGGACGTGCCCGGGGCGGAGCGCCTGGTCGCCAGGCATGACGACATCAAGTCGGAGATCGACTCCAAGGACGAAGACTTCAACAAGTTCTACAGCGACGGCGAAAAGCTGGTCAGAGAAGGCCACTTCATGTCAGCCGAGATAGAGGAGAGGATGTCCGCCCTCCGCAGCCGCCGCGCCGTGCTGGACTCGTGCTGGAGCTCGCGAAGCAGGATCTACGCGCAACACCTGGACGCTCTGGTCTTCAAGCGCGATGCCATGACCCTGGACAACTGGATCACGAATAGAGTGCCGCTGGTGAGGGACGGGAAACTTGGTGAGAACGTGGCCCAAGTTGAGGAGTTGATCACGCGCCACCGAGACCTGGAGGAGACCATCGAGGCGCAGAGGGACAAGTTCAACGCCCTCAAGCGCATCACCCTGATCGAGCAAGCCTTCAAGGAGCAACAAGAAGCGGAGGCGGTGGCGCGTCGCCGGTCCGCCGAGAAGCAAGAGGCAGACCGGCTGCAGCAGTACAGGAGGAGGGAGATGGAACGCATCACCGAGGAGAGGAGGAGGGAAACTATCAGTAGAGAGACGGAGCACGCGCCGACGCAGCGGCCGCCCTCCCCGGAGGAGGGCCTGTCCCCGGCGCCGCAGTTCGACAAGCTGCCCAAGAGCGACGCCGGCGTCAAGCGCGCAGAGAGCATGAACGTCGTGAAGACGCCGAAGAGGACCCCCTCGTTCACGACCCGGCGTCGGACCCAGAGCTTCACCAGGCACCGGGGAGGGGACATCGACAAGCTACCGCCCGTGGAGATCGAAGGCTATTTGGAGCGCAAGCAGCAGGCCGGGTGCGGCGGGAAGCGCGCCACGGTCCGGTCGTGGCGCGGCTACCACGCCGTGCTCTGCGGGCAGCTGCTCTGCTTCTTCAGGGACCAGATGGACTTCGCAAGCACCAAGGCCGCGGCGCCGCCCGTCGCCATACTCAATGCGGAGTGCTCCGCGGCCCCGGACTACACCAAGCGCAGCCACGTGTTCCGGCTCCGCTGCGCCGACGGGGCCGAGTACCTGTTCTCGTGCGGCAGCCGCGCGCTGCTGCAGGACTGGGTCAACAAGATCTCCTTCCACGCGCGGCTGCCCCCGGAGCTGCAGCTGACGCCCTACGCCGCGCCCGGGGACTCGCCCACCGCCGAGATCCGAAGGCGGCTCCAACAAAACGCCTCGTCGTCGTCCGAAGAGGAACTGTCTCCGGAGCCCCAGCGCAAGTCCCGGTCCCAGGCGGAGATCCTGCAGGAGCACAGGAGCAGCCAGCAGGCGGCCAGGAGTAGCGCCACACCAGAGCGGACCACCACCACGACCGAAAGACTCATTGAGTCGACAGTGCTGCCGTCGCTGCCGCCCCGACAGCCGCCGCGCGAGGAGGAGGCCGCCGACGTCGTCCTCAGGAACGCGGAGCAGGCCGCCGGCGGGACCTGGGGCAGGTCCAGATTCTCAAACGGACGAGACATCAATTCAGACTTCATCAGGTCACAGAAAGACGCATACGGAGGTGGTGGAAGCGGTGCCAGGCCGGCGTCCGTGGCTGGTAGCGGAGGCTCTCCCGCCGTAGAGCGGCCCGCCTCGCGGTCGTCGGGCGAGTCGGAGCTGTCCGTGAGCAGTGTGACGAAAGACAAGAAAGAGAAGAAGGGAGTCTTCGGAGGCTTCTTCAGCAAGAAGAAGCGGCCGCAGAGTCACATGTAG
Protein
MRVDDRRVRSVRALADKLLNQGPTQQAATVAQRRDAFLSKWAALSGALQRYRDNLAAALEIHSFNRDVEDTAERISKKAAIFSSTERGRELEAAHLLRRSHLARAAEASAVLTRIQELQADGTDLATRHPEHAKDIEESLRNLREGWDNLQKLAERRTALLDAAINEHKFDENLKELEVWVSEAVKQMDEVEDPETMAEAQALLELHDEKKAEIDNRQKAIASLKKEAEQTPEKLKKVEHLSTTLDQAWLKRKENLTQAHQLQLLKEQARQIEDWLSTKEAFLNNDDLGENLDAVETLIRKHAEFSKLLESQICRVDELRKSAEGLKDHPLRVRVDDVLRRADRLKESCKSRGDVLQQSRQLHQFLQDLQHEREWIALKMQIANDQNYRELSNLQSKIQRHAAFESELAANKGRIDDVANRGEALIESKHYASQEIAKHVEELENQWQELQTAAKLRHDRLQEAYQARIFFRGLDDFTTWLDEVEAQLLSEDHGKDLASVTVLLKRHSRLEQQVSSKADTATQLADTARQLADTKHFMAQEILDRADQAVKRYRQLQEPIQIRRDNLEDAELLHRWDRDADEEFAWLQEREPLVHQEDAGSSLPEAQALLKKHLSLEAELIAREPTVSAVCGRAAQLSRRGHFASGALEARARELSALMRSLLHGASVRTAALQRRCDVLMLVSEVAEARAWLAARRGAVGGGAGAEPRDEGEARGLTRRLHAALADLTPFDLTLDKLYKACAALQERGAGDADEVKRSIDELKAEHEDMKLLAARRQQRLEQSVKYFKFVEECEEVSEWIGEQMAAAASEDYGLDVEHVDTLQQAFASFLTQLNANEGRIESVCEAGNVLLEENNPESDKVKQRVDDIRGLWEDLKELAVARQEALAGARQVHEFDRSADETGAWIEEKERALSELSPSAHAQPAHGRALHALRADLHAVRDQHQRLRDEAARLGETFPDAREHLSSKLEDVTEALDALERRAEHCAQQQELASHLQAYFGTYQELLAWCSATLARVTAPELSRDVPGAERLVARHDDIKSEIDSKDEDFNKFYSDGEKLVREGHFMSAEIEERMSALRSRRAVLDSCWSSRSRIYAQHLDALVFKRDAMTLDNWITNRVPLVRDGKLGENVAQVEELITRHRDLEETIEAQRDKFNALKRITLIEQAFKEQQEAEAVARRRSAEKQEADRLQQYRRREMERITEERRRETISRETEHAPTQRPPSPEEGLSPAPQFDKLPKSDAGVKRAESMNVVKTPKRTPSFTTRRRTQSFTRHRGGDIDKLPPVEIEGYLERKQQAGCGGKRATVRSWRGYHAVLCGQLLCFFRDQMDFASTKAAAPPVAILNAECSAAPDYTKRSHVFRLRCADGAEYLFSCGSRALLQDWVNKISFHARLPPELQLTPYAAPGDSPTAEIRRRLQQNASSSSEEELSPEPQRKSRSQAEILQEHRSSQQAARSSATPERTTTTTERLIESTVLPSLPPRQPPREEEAADVVLRNAEQAAGGTWGRSRFSNGRDINSDFIRSQKDAYGGGGSGARPASVAGSGGSPAVERPASRSSGESELSVSSVTKDKKEKKGVFGGFFSKKKRPQSHM

Summary

EMBL
BABH01031739    BABH01031740    BABH01031741    BABH01031742    BABH01031743    BABH01031744    + More
BABH01031745    BABH01031746    BABH01031747    BABH01031748    NWSH01000005    PCG80995.1    PCG80996.1    ODYU01005424    SOQ46253.1    KQ458863    KPJ04733.1    KQ435885    KOX69621.1    JR039834    AEY58867.1    JR039833    AEY58866.1    KZ288295    PBC28978.1    NNAY01000364    OXU28868.1    GBYB01009365    JAG79132.1    GBYB01009830    JAG79597.1    GBYB01009366    JAG79133.1    KQ768090    OAD53242.1    GDHC01006421    JAQ12208.1    GBRD01009523    JAG56301.1    GGMR01005673    MBY18292.1    GFXV01006801    MBW18606.1    JXUM01064422    JXUM01064423    JXUM01064424    JXUM01064425    KQ562297    KXJ76213.1    CH477381    EAT42207.1    GANO01003796    JAB56075.1    GL452568    EFN77073.1    GAMC01021547    JAB85008.1    GAMC01021546    JAB85009.1    KK107139    EZA57818.1    QOIP01000003    RLU24811.1    GAMC01021545    JAB85010.1    GAKP01022575    JAC36377.1    GDHF01022195    GDHF01003466    JAI30119.1    JAI48848.1    KQ977394    KYN03044.1    ADTU01005248    ADTU01005249    ADTU01005250    ADTU01005251    KQ976440    KYM86614.1    KQ982074    KYQ60465.1    CH480817    EDW50332.1    CM002912    KMY97350.1    KMY97352.1    KMY97348.1    KMY97355.1    KMY97349.1    KMY97346.1    CM000159    EDW93267.2    KRK01062.1    KMY97351.1    KMY97353.1    KRK01058.1    KRK01063.1    KRK01059.1    KRK01060.1    KMY97354.1    KQ979955    KYN18507.1    KRK01061.1    KMY97347.1    KRK01057.1    GGLE01001873    MBY05999.1    LBMM01002799    KMQ94348.1    AE014296    AAS64957.1    AGB94063.1    AGB94062.1    ABW08452.2    AAF47766.1    ADV37478.1    AAS64958.1    CH954178    KQS43499.1    KQS43498.1    KQS43500.1    EDV50775.2    KQS43502.1    KQS43503.1    KQS43501.1    CH902618    EDV39946.2    KPU78310.1    KQ434839    KZC07978.1    KPU78313.1    KPU78314.1    KPU78311.1    KPU78312.1    JRES01001060    KNC25934.1    KQ414663    KOC65284.1    KA647177    AFP61806.1    KA647176    AFP61805.1    CP012525    ALC43341.1    NEVH01022647    PNF18326.1    PNF18328.1    PNF18333.1    PNF18330.1    OUUW01000012    SPP87215.1    PNF18334.1    PNF18327.1    PNF18331.1    PNF18332.1    SPP87216.1    SPP87212.1    SPP87213.1    SPP87211.1    KQ971312    EEZ98593.1    PNF18335.1   
Pfam
PF14604   SH3_9        + More
PF00307   CH
PF15410   PH_9
PF00435   Spectrin
PF00018   SH3_1
Interpro
IPR036028   SH3-like_dom_sf        + More
IPR001849   PH_domain       
IPR001589   Actinin_actin-bd_CS       
IPR002017   Spectrin_repeat       
IPR011993   PH-like_dom_sf       
IPR041681   PH_9       
IPR001605   PH_dom-spectrin-type       
IPR001715   CH-domain       
IPR036872   CH_dom_sf       
IPR018159   Spectrin/alpha-actinin       
IPR001452   SH3_domain       
SUPFAM
SSF47576   SSF47576        + More
SSF50044   SSF50044       
Gene 3D
PDB
1U4Q     E-value=3.91787e-27,     Score=308

Ontologies

Topology

Length:
1597
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00153
Exp number, first 60 AAs:
0.001
Total prob of N-in:
0.00007
outside
1  -  1597
 
 

Population Genetic Test Statistics

Pi
242.158201
Theta
160.053613
Tajima's D
1.286487
CLR
0.40034
CSRT
0.729563521823909
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
27530593 RLLPEPTSPISIDTASQCSSKS 100.00 2e-09
26280517 AAAPIIDVANSHQNIK 95.45 9e-08
28467696 AAAPAPKPAAPAPKPAAPAPK 95.45 9e-08
26280517 AAAHVTGGGIIHNIPR 95.24 2e-07
28556443 LLEIISGER 100.00 2e-04
28467696 PASTSDMEPIREK 100.00 4e-04
28556443 LVPTEVWEEEPVER 100.00 0.005
26280517 SAAHSPQAEGGAADWTEVK 100.00 0.027
28467696 SADDSATTAKDDIPVAPETSDDKNK 100.00 0.027
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