SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14883  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012171
Annotation
PREDICTED:_spectrin_beta_chain?_non-erythrocytic_5_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.542 Nuclear   Reliability : 1.554
 

Sequence

CDS
ATGGCGTTTTTAATTATGGCGCCTTGCCTGCTGGCGGCGGCCAAGGACCGTAAGGCGAGGTTGGAGGACGCTCGTAACCTGTACCAATTCCTGGAGGACCACGAAGAAGAAGAAGGTTGGGTGACGGAGAAGCAGCGCATATGTCGCACCGACGTCGCCGCCAAGGACCTGAGAGGAGTGCTGGCGCTGAAGCAGAAGCACACGGGGCTGATGCACGAGCTGAGGGCCAGGGAGCACGTCTCCCAGCGACACAAGTCCAAGGGTCAGAGCCTCATAGACGCCGGTCACCCGAAGAGCGCCGAGATCGAGCGGCGCCTGACCTCGCTCAGCAAGCAGTGGGAGACGCTCAGGGACCTGGCTGCAGCACGAGAGAAACAACTGGCTGACGCTGCAGAGGCTCACCAGTTCTACGGGGACGCGAACGAGGCGGAGTCCTGGATGAAGGAGAAGCGTCCGCTGGTGAGCACCGCGGACTGCGGGCAGGACGCCGCCGGCGCCGCCGCCCTGCTGGCCCGCCACCGCGCGCTGCACGACGCCATCCGCGCGCACCACGCCGAGCTGCAGACCCTCGCCGCGCACGCAGCCCGCCTGCAGCAGGCCGGCATACAGTGCCTCCAGTTACCAACGGAAGTGGAGTCCACTCAGGGCATGGAAGACGAGGAGTGGGTGAACGAGTCCAGGCTGGTGCCGACCGAGGTGTGGGAGGAGGAGCCGGTCGAGAGACTCGAGCACAGGACCGTCACCGAGGAGAGACAAGTACCGCAGGTGAAAGCGCTGTACCCATTCACGGGCCAAGGGATATCGATGCAGAAGGGCGAGGTCATGTTCCTGATCAACAAGACGAACCCGGACTGGTGGTCGGTGCGGAAGGCGGACAGGACCGACGGCTTCGTGCCCGCCAACTACGTGCGGGAGATCGAGCCCAGGGTCGTGCCGGTCCAAGTCCGCAGACCAGAGAAGGTGAGGACGGTTCAGCGCGTGAAGAAAACGGTGCTGGTGAAGCAGGTGGTGCCCGTGAAGAGGAACAAGCCGACCGCCAGGAGGGCGTCCAGGGTCCAGCAGAAGGTCGTCACCGTGGCAGCCAGGATGGCGGACATACAGAAGGACTACGACGAGTTGGTAGCGTTGTCGTCTGCGCGTCGTGAACAACTCGAGGATGCCATAAAGCTGTACAGCTTCTTCGCCGAGTGCGATGACTTTGACAAGTGGATGAAAGACAAGGAGAAGTTCCTCAAGTCTGACGACGGCGAGGAGAGCGTGGACACCGCCAAGAGGAAGTATGAGAAATTCGTGACCGATCTGTCGGCGGCCTCCAAGCGCTTGGAGCACATCGACGAGGCTGCCGAGGAGCTGGTCTCCGCCAGGCACGGGCAGGCCAGCAAGGCGGTCGCCAGGAAGCAGCAGCTGCGCCAGCAGTGGGATAAACTACTGCGACTGAAACAACAGAAGGAGAAGAGCCTGGAGGGCGCGTCGAGCGTGGAGTTGTTCAGCCGCACCTGCGACGAGGCTCTGGAGTGGATGGCGGAGAAGGAGCAGCAGCTGGCGGCCGGGCCGGGCGCCGCCAGCGACCTGCGCACCGTGCGCGCGCTGCAGCGGAGACACGCCCAGCTCGAGCGAGACCTGCAGCCGCTCCGGGACAAGGTCGCCACCGTCAGTCTGCTAGCCGACTCAGTGAAGTCCCAATATCCGAGCGAGAGGGCTAATGTGGAAGCGAGACAGAGAGAGCTTCAGCGCGTCTGGGAGAGGTGTCGGCAGCAGGCTGATGAGAGGAGGGACAGGCTGGAGAGCGCCGTGGGGCACCAGATATTCGGGAACAGTAGCGCCCAGCTACAAGGCTGGCTGCAGAAAACGAGAGAGCAGCTAGCGCAAGAGGCCACCGCCAAGGACGTCGCGACGGCCGAGGCTCTGCACGACCAACACAAGGAGCTGCTGGACGACATCAAGACTCATGACGACGAATTCAAGGAGGTGATCGCTCTCGGCAAACAGCTGCTGTCCAAGAACCCTGCGCTCACGGACGTGGCGGACAAGATCAAGCAGTTGGAGCAGGACCAGAAGGCGGTCGCCAAAGAGTGGCAAGACAAGGACGCATATCTGAAGCAGCTGGTGCAGTTGCAGTGCTTCAACCGGGAGGCCGACCAGATCGACGCGTCGTCCGGGGCCCACGAGGCTTACTTGGACTACACGCACTTCGGGTCGTCGGTGGATGAGGCCGAGGCCCTGGTGAAGAGGCACGAGGAGCTGGAGGCGCGGCTGGCGGCGCAGGACGAGAGGCTGTCCGCCTTCGTGCAGCGGGCTGACGCGCTGCTGGAACTGCCACACTATGCTGCGCAGCACATCGTGTCCCGTCGCGACGCCGTGCTATCCCGTCGTGACGCTGTGCGCCTGGCCGCCACCGAGCGACGCCGCGCGCTGCACGCCAGCCTGGCGTACCAGCAGTTCGTGGCGGCAGTTGAAGAATTGCAAACTTGGATCCAGGACAAAACGAAGACTGCCAAGGACCAGAGCTACAGAGATTTGGCCAATTTGGAGCGTAAACTTCAGAAACACGAAGCATTTGAAAGGGAGTTACAAGCCAACGAGAAGCAACTCAGGAATGTTGAGAGTATCGGACAGTCTCTGCAGAAGTCGGATCCAGCACGCGCCCAGGAGGTCAGCGCGCGGCTGGAGTCCCTGCGCGAGGCCTGGGAGGCGCTGGTGGCCGCCTCCAGGGACAAGGGGGGCAAGCTCCGCCAAGCAGCTCAACAGAGGCAACACCGCAGGTCTATTGAAGACGCGAAGGCGAGACTGGTGGAGTTGGAGAGGGCGTTGAAAAGCGAAGAGATCGGCACCGACTTGAGGAGTTGCAAGCGACTGCTCAACCAGCACCAGACTCTGGAGCAAGAATTAAGTCAGTGGGAGCAAAAGGCGACGGTGTTGGCTGCTCAAGGTGCCGACTTAGTGTCGGCGGGGCACTTCGACGGGCCGGCCATAGAGAGGGACAGCGCTGCCTTACTGCGGGCCGTGACGGCGCTCCAGCCGCCCGCCGAGGCCAGGAGGAAGGCGCTGAACCGAAGTCTCCTGCACCACAAGTTCGCTGCCGAGGTAGCCGGCGAGTTGGACTGGCTGTCGGAGCGCAAGGCGGCGGCGTCGTCGGAGGCGCTGCCCGCGGACCTGCACGCCACCCAGACGGCGCAGAAGAAGCACGGGAAGCTGCGCGCCGAGCTCACCGGCCGGCGGCCCCTCATCGCGCGCGTCATCGAGCAGGGCCGCGGGCTGGTCGCAGAGGGACACCCGCAGAAAGATAAGATCCTGGCTCTTTGCGAAGAGTTGGAGTCAGCGTATACCGAGGTGTCGGCGGCGGCGGACGCCAGGGCCTCGCGTCTGGAGGCCGCGCTGAGGGCGCAGCAGTTCTTGCACGAGGCCCGCGAGGTGGACTCCTGGCTCGCTGACAAGGCGACAGCTCTCTCCACCGACGACGTTGGAGGAGACAGACATCGGGCCACTCAACTCTTGACGAGGCATAAGGCTGTAGAGTTGGAACTGGACACGTACGCCGCGATCATCTCTGAGATGGGCCACGTGGCGTCGTCGATGCTGGGCTCGGGACACCCGGAGGGCGGCACGCTGGTGTCGCGCCACGCCGCGCTGGCCGACACCCTGGCGAGGCTGCAGCGTCTGGCGGCGCACCGGCAGCACGCGCTGGTCGAGAGCGTCTGCAGGCACGAATACTTGGCTGAGAGCGAGGAGTTGGAGCACTGGATCCAGGAGCAGTACGCCGCAGCCTCCAGCGAGGACTACGGCCAGGATTACGAACACTTACTGATCTTACGGTCTAAATTCGATGAGCTCCGTCACCGCGTCGAGAGTGGAGCGGAACGGTTCAACCAGTGCGAGGAGCTGGCCAAAAAGCTGCTGGCGTCCGAGAGCCCTTACATCGAGGACATCGAGAAGAGACAGGAGGCGCTGGGAGAGTCGTGGCAGCGACTGGTGGAGCAGATCCAGTCGCGAGGGTCTCGTCTCCACGCGGCGGGCGAGATCCACCGCTTCCACCGCGACGTGGGCGAGCTGGTGTCGCGCGCGGCGGACAAGCGCGCGGCGCTGGGCGGCCGGCCCGCGCCCCGGGACCTGCGCGCCGCCACCGCGCTGCTCCGGGACCACGACACGCTGCGCAACGACCTGCTCGCTGTCGACGCGCAGATGCAGGTCTTACAAGAGGAGGGCAGTCGTCTCCAAAAGCTGTACCCTGGGGGTAACGTGACGCAGATCGCTCTACAGCAGAAAGCTCTGGCTGAAGCTTGGGAGATGCTGAAGCAGGCTGCAGACGAACGCAAGCACGTCCTGCTGCAGCATCTACAGCTGCACCAGTTCCTCACGCAGGTGCGCGACCTGACGTCGTGGTGCCGCAGCGTGGCGGCGTCGCTGGGCGGCGGCGTGCGCGTGCGCGACGCGGTGTCCGCACAGAGCGCGCGCGCCGAGCACCACGCGCTGCGCGCCGAGCTGGACGCGCGCGACGACAGCTTCGCGGCCGCCCTGCAGCTCGGACACGACCTGCTCGCCGACAGACACCCCAGCTCCGCCGAGATCGAGGAGAAGTGCGGGGCGCTGATGGAGGAGCGTGCGCGGCTGGAGCGCGCGTGGGCGGCGCGGCAGGTGGCGCTGGACCAGCTCATAGACCTGCACTGCTTCCTGCGCGACGCCAAGCAGCTGCACGACCTCTGCGCCGCGCAGGAGGCCTCGCTCAGTACAGAGCTGTCCCCTACCAGCAGCGTCGAGGCCATCGAGCACCAGCTGAAGAAGCACGAAGCCTTCGAGAAGCTGATCGCGACCCAGGACGAAAAGCTGGCAACATTGAACAGCCATGGCGACAAGCTGCTACAGCAGAACCACGTGGAAAGCCAGAGGATCGCTGACGAGCTGCAACTAATTAACGAGAGGAGACAAAAGCTGTACGAGGCGGCGGCGGCGCGGCGCGCGGCGCTGGGTCGCCTGCGGGCTCGCGCGCAGCTCGCCCGGGACGCGGCCGAGACTCGCAGCTGGGTCGCGGAGAAGCTCGCCAAGCTGACTGCCGACCAACAGCACGGCGAAGTAACAAACTTGGAGGATAAGATCAAGAAGCTGCAGAAGCACCAGGCCTTCACGGCCGAGCTGGCGGCCAACAAGGCGCGCCTGCAGGAGGTGGAGGCGCTGGCCCGGCAGCTCAGCCCCGACCCTGAGGTCGAGGAGCAGCTGGCTGAGCTGAGGAATGACTGGGCGAAACTCGAAGACGCGACCCGGGAGACTGGTCGCGGTTTGGAAGAAGCCCAAGACATCCTGGAGTTCAACCAGCACTTGGACAAGTTCGAGGCTTGGATCAGAGACAAGGAGATGATGGTATGTTATGGATATGGGATTATGGGATATGGATGGATGGTAATTTAA
Protein
MAFLIMAPCLLAAAKDRKARLEDARNLYQFLEDHEEEEGWVTEKQRICRTDVAAKDLRGVLALKQKHTGLMHELRAREHVSQRHKSKGQSLIDAGHPKSAEIERRLTSLSKQWETLRDLAAAREKQLADAAEAHQFYGDANEAESWMKEKRPLVSTADCGQDAAGAAALLARHRALHDAIRAHHAELQTLAAHAARLQQAGIQCLQLPTEVESTQGMEDEEWVNESRLVPTEVWEEEPVERLEHRTVTEERQVPQVKALYPFTGQGISMQKGEVMFLINKTNPDWWSVRKADRTDGFVPANYVREIEPRVVPVQVRRPEKVRTVQRVKKTVLVKQVVPVKRNKPTARRASRVQQKVVTVAARMADIQKDYDELVALSSARREQLEDAIKLYSFFAECDDFDKWMKDKEKFLKSDDGEESVDTAKRKYEKFVTDLSAASKRLEHIDEAAEELVSARHGQASKAVARKQQLRQQWDKLLRLKQQKEKSLEGASSVELFSRTCDEALEWMAEKEQQLAAGPGAASDLRTVRALQRRHAQLERDLQPLRDKVATVSLLADSVKSQYPSERANVEARQRELQRVWERCRQQADERRDRLESAVGHQIFGNSSAQLQGWLQKTREQLAQEATAKDVATAEALHDQHKELLDDIKTHDDEFKEVIALGKQLLSKNPALTDVADKIKQLEQDQKAVAKEWQDKDAYLKQLVQLQCFNREADQIDASSGAHEAYLDYTHFGSSVDEAEALVKRHEELEARLAAQDERLSAFVQRADALLELPHYAAQHIVSRRDAVLSRRDAVRLAATERRRALHASLAYQQFVAAVEELQTWIQDKTKTAKDQSYRDLANLERKLQKHEAFERELQANEKQLRNVESIGQSLQKSDPARAQEVSARLESLREAWEALVAASRDKGGKLRQAAQQRQHRRSIEDAKARLVELERALKSEEIGTDLRSCKRLLNQHQTLEQELSQWEQKATVLAAQGADLVSAGHFDGPAIERDSAALLRAVTALQPPAEARRKALNRSLLHHKFAAEVAGELDWLSERKAAASSEALPADLHATQTAQKKHGKLRAELTGRRPLIARVIEQGRGLVAEGHPQKDKILALCEELESAYTEVSAAADARASRLEAALRAQQFLHEAREVDSWLADKATALSTDDVGGDRHRATQLLTRHKAVELELDTYAAIISEMGHVASSMLGSGHPEGGTLVSRHAALADTLARLQRLAAHRQHALVESVCRHEYLAESEELEHWIQEQYAAASSEDYGQDYEHLLILRSKFDELRHRVESGAERFNQCEELAKKLLASESPYIEDIEKRQEALGESWQRLVEQIQSRGSRLHAAGEIHRFHRDVGELVSRAADKRAALGGRPAPRDLRAATALLRDHDTLRNDLLAVDAQMQVLQEEGSRLQKLYPGGNVTQIALQQKALAEAWEMLKQAADERKHVLLQHLQLHQFLTQVRDLTSWCRSVAASLGGGVRVRDAVSAQSARAEHHALRAELDARDDSFAAALQLGHDLLADRHPSSAEIEEKCGALMEERARLERAWAARQVALDQLIDLHCFLRDAKQLHDLCAAQEASLSTELSPTSSVEAIEHQLKKHEAFEKLIATQDEKLATLNSHGDKLLQQNHVESQRIADELQLINERRQKLYEAAAARRAALGRLRARAQLARDAAETRSWVAEKLAKLTADQQHGEVTNLEDKIKKLQKHQAFTAELAANKARLQEVEALARQLSPDPEVEEQLAELRNDWAKLEDATRETGRGLEEAQDILEFNQHLDKFEAWIRDKEMMVCYGYGIMGYGWMVI

Summary

EMBL
BABH01031739    BABH01031740    BABH01031741    BABH01031742    BABH01031743    BABH01031744    + More
BABH01031745    BABH01031746    BABH01031747    BABH01031748    KQ459988    KPJ18807.1    KQ458863    KPJ04733.1    NWSH01000005    PCG80996.1    GBYB01009365    JAG79132.1    GBYB01009366    JAG79133.1    GBYB01009830    JAG79597.1    NEVH01022647    PNF18332.1    PNF18334.1    PNF18335.1    PNF18333.1    PNF18330.1    KQ434839    KZC07978.1    GEDC01026206    JAS11092.1    GEDC01009895    JAS27403.1    PNF18331.1    PNF18327.1    KK107139    EZA57818.1    LBMM01002799    KMQ94348.1    GEDC01015819    JAS21479.1    GEDC01002935    JAS34363.1    KZ288295    PBC28978.1    ADTU01005248    ADTU01005249    ADTU01005250    ADTU01005251    KQ982074    KYQ60465.1    KQ414663    KOC65284.1    NNAY01000364    OXU28868.1    QOIP01000003    RLU24811.1    KQ768090    OAD53242.1    GL441581    EFN64568.1    GDHC01006421    JAQ12208.1    KQ977394    KYN03044.1    GFTR01009007    JAW07419.1    GBBI01002539    JAC16173.1    GANO01003796    JAB56075.1    DS232057    EDS33424.1    UFQS01000770    UFQT01000770    SSX06757.1    SSX27102.1    SSX06759.1    SSX27104.1    GFDL01000633    JAV34412.1    DS235822    EEB17760.1    CH477381    EAT42207.1    GEBQ01002340    JAT37637.1    JXUM01064422    JXUM01064423    JXUM01064424    JXUM01064425    KQ562297    KXJ76213.1    SSX06758.1    SSX27103.1    PYGN01000797    PSN40703.1    AXCM01000382    AAAB01008898    EAA09222.5    EGK97170.1    EGK97171.1    GGMS01015295    MBY84498.1    APCN01005373    GGFK01000186    MBW33507.1    GGFJ01000004    MBW49145.1    GFXV01003552    MBW15357.1    AXCN02000088    GFXV01006801    MBW18606.1    GBGD01000028    JAC88861.1    GGFK01000185    MBW33506.1    GGFM01000104    MBW20855.1    ADMH02001101    ETN64105.1    CVRI01000047    CRK98513.1    GGMR01005673    MBY18292.1    CH964101    EDW79498.1    ABLF02022164    LJIG01000619    KRT86321.1    CH940647    KRF84108.1    OUUW01000012    SPP87217.1    EDW68975.2    KRF84107.1    SPP87215.1    SPP87214.1    SPP87211.1    SPP87216.1    SPP87213.1    SPP87212.1    CH902618    KPU78315.1    CP012525    ALC43341.1    KPU78313.1    KPU78314.1    KPU78311.1    KPU78312.1    EDV39946.2    KPU78310.1   
Pfam
PF14604   SH3_9        + More
PF00307   CH
PF15410   PH_9
PF00435   Spectrin
PF00018   SH3_1
Interpro
IPR036028   SH3-like_dom_sf        + More
IPR001849   PH_domain       
IPR001589   Actinin_actin-bd_CS       
IPR002017   Spectrin_repeat       
IPR011993   PH-like_dom_sf       
IPR041681   PH_9       
IPR001605   PH_dom-spectrin-type       
IPR001715   CH-domain       
IPR036872   CH_dom_sf       
IPR018159   Spectrin/alpha-actinin       
IPR001452   SH3_domain       
SUPFAM
SSF47576   SSF47576        + More
SSF50044   SSF50044       
Gene 3D
PDB
3EDV     E-value=8.59576e-33,     Score=357

Ontologies

Topology

Length:
1799
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05964
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1799
 
 

Population Genetic Test Statistics

Pi
22.334838
Theta
157.760569
Tajima's D
1.330607
CLR
0.138577
CSRT
0.745612719364032
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 VYALPEDITER 100.00 3e-05
28556443 SVAASLGGGVR 100.00 1e-04
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