Gene

KWMTBOMO14882  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012171

Annotation

PREDICTED:_spectrin_beta_chain?_non-erythrocytic_5_[Bombyx_mori]

Location

Bomo_Chr24(+):16986141-16994985      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.691 Mitochondrial   Reliability : 1.223

CDS

ATGACGTACGTGGCTAGTTACTATCACACGTTCGCTCGTATGAAGAATGAACAGAAGAGTGGTAGGAGAATTGCCAATATCATCGGTCAAATGATGGACTGTGATGAGAGGAAGGGTGAATACAGCCGGCTGGTCACCGCGCTCTTGGAGTGGATCCGACTCAAGATCGAAGAGTTGAATGACAGGGAGCTGCCCAACTCTCTGGATGGAATTCAGCGTCTGCTACTTGGCTTCAAGCAGTACAGGACCGTCGAGAAACCTCCCAAATACAAAGAGCGATCGGAGATCGAAGCGTTATATTTCCACATCAACACGATGCAGAAGAGTCTGGTGGGAGAACCCTGGGCGCCACTGGAGGGACAACTTCCTCAAGATCTGGAGCGAGCCTGGCAAAGATTGGAACAGGCCGAACACGCGAGAGAGATAGCGCTCAGGACCGAACTGCTCAGACAACAGAGGCTCGAACAACTCAATTACAAATTCAATACTAAGTCGGTCCTGCGTAAGGGCTACTTGAAGGAGATGATCCAGGTCCTGTCGGACCCTCGCTACGGCTCCAACCTGGCCCAGGTCGACGCCACTGTCAAGAAACACGAGGCCATATCTGCGGACATCTTAGCAAGAACCGAACGCTTCGAGGACTTATCGGCAATGGCGGCAGAACTGGTCAGGGAGAAGTACCACGGCGCGGAAGCCGTCTCCAGGACCGAGCAGGCGGTCCTGCAACGCTGGAGGGAGCTCCTGGAATTGCTGGAGAGACATAGAGTGTCTCTGGGCAAGCTGGCCAGACTTATGGCACTACTGAGAGAAGCTGATGCCGTGAAACATACGCTGGTTGAGATGAAGACCCAGTTCCAATCGGAGGAAGTCGGCAGGCATCTGTCTGACGTGGAGAGGCTGCTGCAAGCGCACGCTCTCCAGGAGTTGCAGCTGGGCGCCGCGGACGAGAGCCTCAAGCGGCTCGTGCGGCTGGCGGCCGGCGTGGACGGCCCCGCGCAGCCCCAGGCTCAGCTGCAGAAGCAACTAGAGCAACTGCAGGAGGCTTACGACAGGTAA

Protein

MTYVASYYHTFARMKNEQKSGRRIANIIGQMMDCDERKGEYSRLVTALLEWIRLKIEELNDRELPNSLDGIQRLLLGFKQYRTVEKPPKYKERSEIEALYFHINTMQKSLVGEPWAPLEGQLPQDLERAWQRLEQAEHAREIALRTELLRQQRLEQLNYKFNTKSVLRKGYLKEMIQVLSDPRYGSNLAQVDATVKKHEAISADILARTERFEDLSAMAAELVREKYHGAEAVSRTEQAVLQRWRELLELLERHRVSLGKLARLMALLREADAVKHTLVEMKTQFQSEEVGRHLSDVERLLQAHALQELQLGAADESLKRLVRLAAGVDGPAQPQAQLQKQLEQLQEAYDR

Uniprot

H9JRL1   A0A1E1WGV0   A0A212F569   A0A2A4K9V9   A0A2W1B0P1   A0A0N1PEQ6   + More
A0A0N1IPX2   A0A3S2LGC0   A0A1B6G2W7   A0A0A9XRI7   A0A2P8Y8W7   A0A1B6MNV6   A0A0K8TEW3   A0A1B6DP53   A0A023F537   A0A1B6E8W5   A0A1B6CCC7   A0A1B6D713   A0A069DYD5   A0A224XH99   A0A069DYI1   A0A0C9RQ97   A0A0C9RM62   A0A0C9RNA7   A0A336MA20   A0A336KQL4   A0A336KRM1   A0A3L8DWJ0   A0A336M9T0   A0A2R7X2Q7   A0A0J7KVM5   A0A1B0D969   E2APU2   A0A154P9T1   A0A151XJJ0   A0A232FEG8   K7ISG3   A0A146LX34   E0VWK4   A0A087ZZB0   A0A2A3EB80   A0A1B0CK42   A0A310SIG7   A0A3Q0IWI8   W8AB01   A0A034V2K7   Q99140   A0A0P9C3Q0   A0A0P8XUB3   A0A0P8XUB9   A0A0P8XUK0   B3M838   A0A0P8YHA4   A0A0K8UTU1   B4J2I5   B4N559   B4QPI0   A0A1I8NPX4   A0A1I8NPX3   A0A1I8NPX5   A0A1I8NPX0   A0A1I8NPX2   A0A1I8MT52   A0A0J9RNN1   A0A0R1DVK7   T1PEL0   A0A0M4E8S7   A0A1I8MT51   A0A1I8NPX1   T1PEG3   Q7KV69   A0A0R1DYP9   A0A0J9RPN7   A8JNJ6   A0A1I8MT55   A0A1I8MT47   A0A0J9RNM4   A0A0J9RN87   M9PBL6   A0A0R1E094   A0A0J9UDP6   Q9VZQ3   A0A0J9RN82   A0A0J9RPP3   A0A0J9RN49   A0A0Q5U3D5   B4HTR1   B4PGP9   A0A0R1E1I1   A0A0Q5UHY5   A0A0R1DV52   A0A0Q5U9W7   Q7KV70   A0A0Q5U3S2   A0A1W4W102   A0A0Q5U5L8   A0A1W4VNM6   B3NBV8   A0A1W4VNW5   A0A1W4W068  

Pubmed

19121390    22118469    28756777    26354079    25401762    29403074    + More
25474469    26334808    30249741    20798317    28648823    20075255    26823975    20566863    24495485    25348373    2229176    17994087    18057021    25315136    22936249    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01031739    BABH01031740    BABH01031741    BABH01031742    BABH01031743    BABH01031744    + More
BABH01031745    BABH01031746    BABH01031747    BABH01031748    GDQN01004917    GDQN01000158    JAT86137.1    JAT90896.1    AGBW02010239    OWR48874.1    NWSH01000005    PCG80997.1    KZ150497    PZC70672.1    KQ458863    KPJ04733.1    KQ459988    KPJ18807.1    RSAL01000140    RVE46092.1    GECZ01013005    JAS56764.1    GBHO01022141    JAG21463.1    PYGN01000797    PSN40703.1    GEBQ01002340    JAT37637.1    GBRD01001699    JAG64122.1    GEDC01009895    JAS27403.1    GBBI01002539    JAC16173.1    GEDC01002935    JAS34363.1    GEDC01026206    JAS11092.1    GEDC01015819    JAS21479.1    GBGD01000028    JAC88861.1    GFTR01009007    JAW07419.1    GBGD01000012    JAC88877.1    GBYB01009366    JAG79133.1    GBYB01009365    JAG79132.1    GBYB01009830    JAG79597.1    UFQS01000770    UFQT01000770    SSX06760.1    SSX27105.1    SSX06759.1    SSX27104.1    SSX06758.1    SSX27103.1    QOIP01000003    RLU24811.1    SSX06757.1    SSX27102.1    KK856192    PTY25175.1    LBMM01002799    KMQ94348.1    AJVK01004256    AJVK01004257    AJVK01004258    GL441581    EFN64568.1    KQ434839    KZC07978.1    KQ982074    KYQ60465.1    NNAY01000364    OXU28868.1    GDHC01006421    JAQ12208.1    DS235822    EEB17760.1    KZ288295    PBC28978.1    AJWK01015743    AJWK01015744    AJWK01015745    AJWK01015746    AJWK01015747    AJWK01015748    AJWK01015749    AJWK01015750    KQ768090    OAD53242.1    GAMC01021545    JAB85010.1    GAKP01022575    JAC36377.1    X53992    CAA37939.1    CH902618    KPU78315.1    KPU78310.1    KPU78311.1    KPU78312.1    KPU78313.1    EDV39946.2    KPU78314.1    GDHF01022195    GDHF01003466    JAI30119.1    JAI48848.1    CH916366    EDV97070.1    CH964101    EDW79498.1    CM000363    EDX09073.1    CM002912    KMY97352.1    CM000159    KRK01061.1    KA647176    AFP61805.1    CP012525    ALC43341.1    KA647177    AFP61806.1    AE014296    AAS64958.1    KRK01059.1    KRK01060.1    KMY97349.1    ABW08452.2    KMY97347.1    KMY97351.1    KMY97353.1    AGB94062.1    KRK01057.1    KMY97350.1    AAF47766.1    ADV37478.1    KMY97348.1    KMY97355.1    KMY97354.1    KMY97346.1    CH954178    KQS43502.1    KQS43503.1    CH480817    EDW50332.1    EDW93267.2    KRK01058.1    KRK01063.1    KQS43498.1    KRK01062.1    KQS43501.1    AAS64957.1    AGB94063.1    KQS43499.1    KQS43500.1    EDV50775.2   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000283053    + More
UP000245037    UP000279307    UP000036403    UP000092462    UP000000311    UP000076502    UP000075809    UP000215335    UP000002358    UP000009046    UP000005203    UP000242457    UP000092461    UP000079169    UP000007801    UP000001070    UP000007798    UP000000304    UP000095300    UP000095301    UP000002282    UP000092553    UP000000803    UP000008711    UP000001292    UP000192221   

PRIDE

H9JRL1    Q99140    Q7KV69    A8JNJ6    Q9VZQ3    Q7KV70    + More

Pfam

PF14604   SH3_9        + More
PF00307   CH
PF15410   PH_9
PF00435   Spectrin
PF00018   SH3_1

Interpro

IPR036028   SH3-like_dom_sf        + More
IPR001849   PH_domain       
IPR001589   Actinin_actin-bd_CS       
IPR002017   Spectrin_repeat       
IPR011993   PH-like_dom_sf       
IPR041681   PH_9       
IPR001605   PH_dom-spectrin-type       
IPR001715   CH-domain       
IPR036872   CH_dom_sf       
IPR018159   Spectrin/alpha-actinin       
IPR001452   SH3_domain       

SUPFAM

SSF47576   SSF47576        + More
SSF50044   SSF50044       

Gene 3D

1.10.418.10     2.30.29.30    

CDD

cd00014  CH

ProteinModelPortal

H9JRL1   A0A1E1WGV0   A0A212F569   A0A2A4K9V9   A0A2W1B0P1   A0A0N1PEQ6   + More
A0A0N1IPX2   A0A3S2LGC0   A0A1B6G2W7   A0A0A9XRI7   A0A2P8Y8W7   A0A1B6MNV6   A0A0K8TEW3   A0A1B6DP53   A0A023F537   A0A1B6E8W5   A0A1B6CCC7   A0A1B6D713   A0A069DYD5   A0A224XH99   A0A069DYI1   A0A0C9RQ97   A0A0C9RM62   A0A0C9RNA7   A0A336MA20   A0A336KQL4   A0A336KRM1   A0A3L8DWJ0   A0A336M9T0   A0A2R7X2Q7   A0A0J7KVM5   A0A1B0D969   E2APU2   A0A154P9T1   A0A151XJJ0   A0A232FEG8   K7ISG3   A0A146LX34   E0VWK4   A0A087ZZB0   A0A2A3EB80   A0A1B0CK42   A0A310SIG7   A0A3Q0IWI8   W8AB01   A0A034V2K7   Q99140   A0A0P9C3Q0   A0A0P8XUB3   A0A0P8XUB9   A0A0P8XUK0   B3M838   A0A0P8YHA4   A0A0K8UTU1   B4J2I5   B4N559   B4QPI0   A0A1I8NPX4   A0A1I8NPX3   A0A1I8NPX5   A0A1I8NPX0   A0A1I8NPX2   A0A1I8MT52   A0A0J9RNN1   A0A0R1DVK7   T1PEL0   A0A0M4E8S7   A0A1I8MT51   A0A1I8NPX1   T1PEG3   Q7KV69   A0A0R1DYP9   A0A0J9RPN7   A8JNJ6   A0A1I8MT55   A0A1I8MT47   A0A0J9RNM4   A0A0J9RN87   M9PBL6   A0A0R1E094   A0A0J9UDP6   Q9VZQ3   A0A0J9RN82   A0A0J9RPP3   A0A0J9RN49   A0A0Q5U3D5   B4HTR1   B4PGP9   A0A0R1E1I1   A0A0Q5UHY5   A0A0R1DV52   A0A0Q5U9W7   Q7KV70   A0A0Q5U3S2   A0A1W4W102   A0A0Q5U5L8   A0A1W4VNM6   B3NBV8   A0A1W4VNW5   A0A1W4W068  

PDB

4D1E     E-value=1.33417e-26,     Score=297

KEGG

101739867    K06115 spectrin beta | (RefSeq) spectrin beta chain, non-erythrocytic 5

GO

GO:0003779   GO:0005543   GO:0016021   GO:0004725   GO:0006897   GO:0016324   GO:0008091   GO:0005912   GO:0030707   GO:0008092   GO:0042060   GO:0007009   GO:0010797   GO:0032509   GO:0008017   GO:0016327   GO:0045186   GO:0005886   GO:0032432   GO:0005515   GO:0004190   GO:0006508   GO:0003676   GO:0016701   GO:0006355   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

351

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00036

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.05471

outside

1  -  351

 

 

Pi

288.087091

Theta

152.804096

Tajima's D

2.769306

CLR

0.105356

CSRT

0.968601569921504

Interpretation

Uncertain