Gene

KWMTBOMO14880  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012171

Annotation

PREDICTED:_spectrin_beta_chain?_non-erythrocytic_5_[Bombyx_mori]

Location

Bomo_Chr24(+):16969161-16976645      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.484

CDS

ATGCAGAGACAGTTGAGCAATGTCAGTTTTCATTCTTACCAGGACTACCAGCCTAGCAGGCGTTATGGGCCGCAGTATGAGCCTGGAGGCTACGCCACGGTAGTACAGCAACGTACCAACATGACCCAGAGGGAGGACGCCCTCAAATTCGAGCAGGGCCGCATCAAGGCCCTGCAGGAGGAGAGGTTGCACATCCAGAAGAAAACCTTCACGAAATGGATAAATTCGTTCCTGCAGAAGGCCCGGATGGAGGTGGAGGATCTATTTGTGGATTTGGCAGACGGGCGGCGCCTCCTCAAACTCCTGGAGATCATCAGCGGGGAGCGTCTGCCGCGACCCAACACCGGCAGGATGAGGGTCCACAAAATCGAAAATGTCAACAAAAGCTTGAGTTTCTTACACACAAAGGTGGGTTGTTATCTATTGTCTAGATGGGTGGACGAGCTCTCGGCCCGCCTGGCGTTAAGTGGTTACCGAAGCCCGTAG

Protein

MQRQLSNVSFHSYQDYQPSRRYGPQYEPGGYATVVQQRTNMTQREDALKFEQGRIKALQEERLHIQKKTFTKWINSFLQKARMEVEDLFVDLADGRRLLKLLEIISGERLPRPNTGRMRVHKIENVNKSLSFLHTKVGCYLLSRWVDELSARLALSGYRSP

Uniprot

A0A1E1WGV0   H9JRL1   A0A0N1IPX2   A0A182M0C2   A0A182J839   A0A182F9J7   + More
A0A2C9GTR5   A0A182XF93   A0A182QIP0   A0A182Y8Y0   A0A026WP38   A0A182W3B1   A0A182RT21   A0A182HYI5   A0A1J1IE74   A0A087ZZA9   A0A1B0D969   A0A0J7L6C3   A0A182JX99   A0A1B6MHB4   A0A1B0CK42   A0A1Y9H0U3   A0A0K8UXG8   A0A1B6JUB1   A0A0C9RQ97   A0A1B6D713   A0A1B6CCC7   A0A151XJJ0   A0A310SIG7   A0A224XH99   A0A1I8MT51   A0A1I8MT47   A0A1I8MT55   A0A1I8NPX3   A0A1I8NPX1   A0A1I8NPX4   A0A1I8NPX2   A0A1I8NPX0   A0A2A3EB80   A0A2J7PPN9   A0A195CSF9   A0A1A9Y299   A0A0M4E8S7   A0A232FEG8   A0A1B0AD16   A0A0R1DVK7   A0A0Q9XIR9  

Pubmed

19121390    26354079    20966253    25244985    24508170    25315136    + More
28648823    17994087    17550304   

EMBL

GDQN01004917    GDQN01000158    JAT86137.1    JAT90896.1    BABH01031739    BABH01031740    + More
BABH01031741    BABH01031742    BABH01031743    BABH01031744    BABH01031745    BABH01031746    BABH01031747    BABH01031748    KQ459988    KPJ18807.1    AXCM01000382    AXCN02000088    KK107139    EZA57822.1    APCN01005373    CVRI01000047    CRK98512.1    AJVK01004256    AJVK01004257    AJVK01004258    LBMM01000572    KMQ98044.1    GEBQ01004692    JAT35285.1    AJWK01015743    AJWK01015744    AJWK01015745    AJWK01015746    AJWK01015747    AJWK01015748    AJWK01015749    AJWK01015750    GDHF01020955    JAI31359.1    GECU01004927    JAT02780.1    GBYB01009366    JAG79133.1    GEDC01015819    JAS21479.1    GEDC01026206    JAS11092.1    KQ982074    KYQ60465.1    KQ768090    OAD53242.1    GFTR01009007    JAW07419.1    KZ288295    PBC28978.1    NEVH01022647    PNF18310.1    KQ977394    KYN03044.1    CP012525    ALC43341.1    NNAY01000364    OXU28868.1    CM000159    KRK01061.1    CH933809    KRG05738.1   

Proteomes

UP000005204    UP000053240    UP000075883    UP000075880    UP000069272    UP000075882    + More
UP000076407    UP000075886    UP000076408    UP000053097    UP000075920    UP000075900    UP000075840    UP000183832    UP000005203    UP000092462    UP000036403    UP000075881    UP000092461    UP000075884    UP000075809    UP000095301    UP000095300    UP000242457    UP000235965    UP000078542    UP000092443    UP000092553    UP000215335    UP000092445    UP000002282    UP000009192   

PRIDE

H9JRL1   

Pfam

PF00435   Spectrin        + More
PF00307   CH
PF14604   SH3_9
PF15410   PH_9
PF00018   SH3_1

Interpro

IPR001589   Actinin_actin-bd_CS        + More
IPR002017   Spectrin_repeat       
IPR001715   CH-domain       
IPR018159   Spectrin/alpha-actinin       
IPR036872   CH_dom_sf       
IPR036028   SH3-like_dom_sf       
IPR001849   PH_domain       
IPR011993   PH-like_dom_sf       
IPR041681   PH_9       
IPR001605   PH_dom-spectrin-type       
IPR001452   SH3_domain       

SUPFAM

SSF47576   SSF47576        + More
SSF50044   SSF50044       

Gene 3D

1.10.418.10     2.30.29.30    

CDD

cd00014  CH

ProteinModelPortal

A0A1E1WGV0   H9JRL1   A0A0N1IPX2   A0A182M0C2   A0A182J839   A0A182F9J7   + More
A0A2C9GTR5   A0A182XF93   A0A182QIP0   A0A182Y8Y0   A0A026WP38   A0A182W3B1   A0A182RT21   A0A182HYI5   A0A1J1IE74   A0A087ZZA9   A0A1B0D969   A0A0J7L6C3   A0A182JX99   A0A1B6MHB4   A0A1B0CK42   A0A1Y9H0U3   A0A0K8UXG8   A0A1B6JUB1   A0A0C9RQ97   A0A1B6D713   A0A1B6CCC7   A0A151XJJ0   A0A310SIG7   A0A224XH99   A0A1I8MT51   A0A1I8MT47   A0A1I8MT55   A0A1I8NPX3   A0A1I8NPX1   A0A1I8NPX4   A0A1I8NPX2   A0A1I8NPX0   A0A2A3EB80   A0A2J7PPN9   A0A195CSF9   A0A1A9Y299   A0A0M4E8S7   A0A232FEG8   A0A1B0AD16   A0A0R1DVK7   A0A0Q9XIR9  

PDB

6ANU     E-value=3.66967e-24,     Score=271

KEGG

101739867    K06115 spectrin beta | (RefSeq) spectrin beta chain, non-erythrocytic 5

GO

GO:0003779   GO:0005543   GO:0005515   GO:0004190   GO:0006508   GO:0003676   GO:0016701   GO:0006355   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

161

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00835

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14227

outside

1  -  161

 

 

Pi

252.873511

Theta

177.813865

Tajima's D

1.098794

CLR

0.126793

CSRT

0.684515774211289

Interpretation

Uncertain