Silkworm Genome Informatics Database

Gene

KWMTBOMO14879

Pre Gene Modal

BGIBMGA007097

Annotation

retrovirus-like_pol_polyprotein_[Lasius_niger]

Location

Bomo_Chr24(-):16959567-16963750 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.69

CDS

ATGAGTCATCATCATGAAAGTAATAACTGTGACGTCAGCAATGCTGACGTCACACTTTTTAAAAACAATACGGAGGTTAATGTTCCGTCATCAGAAGTGGGATCACATGCTGCCTCCGCTCAGCAACAACCTGAAGCTACATCACAAATAGAACCACACCATGGATTAAATACTACAGGCAATGCTGGGAGTTCCTTGGAACAGGAACAGGAACAGCCACAATCAGCATTGCTTAACGCACCGATGAGCAGCGTACCGCCACAATTCATCATGCAGATGATGCATGTGATGCAGCAAATGTCGGAACGCTTAAGTACACCAGCAGAAACTAAGATACGTATAAATGATATTTACCTACCATCATTTGACCCCGATACTAGTGTGGGAGTACGTGAGTGGTGTCAACATATCGATAAAGCCATTGAGACTTATCGACTCAACGACTTTGACATACGCATGAAAGTTGGCAGCCTCCTAAAGGGAAGAGCGAAGATGTGGGTTGACGATTGGATGGTCACTGCAGCTTCGTGGGCTGAGCTGAGCAACAATCTTATCACGACATTCGAGCCAGAAAATCGCTATTCTCGAGACATAGCTCGATTTAGAGAACATATGTACGACTCTTCAAAGGACATCTCGGAGTTCTTGTCACGAGCTTGGGTCTTGTGGAGGAGGATCACCAAAGACAAACTACCTAATGAAGATGCAGTTGAAGCAGTTATTGGTTGCGTGAATGACGAGAAACTTAGGATCGAGCTACTGAACACAAGAGCCACAACAGTACCAGAATTGATATCTGTTGCATCATCAGTAAGAGCCATGAAGCGTTTTCACCAGGGCTCAAATAAGCTGAGTACAAATAAGCGTCCCCGTTTTTTGAATTCTACTTCATCAAATTCATCTTGCCATATCTGTAAAAGAACTAATCACACCACCAACGAATGCTACTACAAAATGGTTACCGAATCAAAGCCCGAACAAAGAAACAAAACAACAACTGAGACAACGAAGGAAGTAACCTCCTACCAGAACGATAAAATAACAATCTGTTCATTCTGCAAAATACCAGGACACAGTTTTGAAACATGCTTCAAACGTGAACGAGCATTGACATCAAACGTAAATTACGTTGCTGGATCAAAACTAGCTCCGATTCAGGTGAAGTTTGGATCAAAGAGTTTTCAGGCAATCTTTGATAGTGGCGCAGAATGCTCACTTATGCGGGAATCCGTAGCAGCTCAAATACCCGGAAAAAGACTACAAACGGCAGATTACTTGAAAGGAATTGGACAATTTCCTGTACTATCAATAGCTACACTCGTAACGGTAGGTGTCATCGATAACATCAACGTTGAATTACAGTTTCACATAGTGGCAGATTACGAGATGACTACAGATATTTTAGTGGGTATGAACTTGATAAACAATACGAACCTAACTATGACGATCACTTCGGGCGGGACGAGGCTAGCACGTCAGCCACATGTTAATCAAGTTCAGTGTATAAATCCAATTTTCGATAAACTGGATTGTGATCTCACAAATGAAGAAGATATCGCAAAATTACGCACCCTTCTAAACAAATATCAGCACCTGTTTATCAGAGGGTATCCAACAACTCGTGTCAAGACAGGTGAACTGGAAATCCGCCTGAAGAATCCAAACAAATATGTAGAACGAAGACCTTACAGGCTCAGTCCAATCGAACGAGAAAGGGTGCGAGCCATTGTGAAAGAGTTGATGGAGCATGGCATTGTACGCGAAAGCAAGTCTCCATACTCCAGTCCCATCATCTTGGTGAAGAAGAAGAATGGTGACGATCGCATGTGCGTGGATTTCAGAGAACTTAACTCTAATACCTTACGGGACCATTACCCGCTGCCACTAATTTCAGACCAAATTGACCAATTGGCCAAGGGGCAATTCTTTACAACCTTTGACATGGCCGCAGGGTTTCACCAAATACCTATTGCAGAATCATCAATTGAAAAGACAGCCTTTGTCACACCGGATGGACTGTATGAATATACGACTATGCCATTTGGATTGAGTAATGCATGTTCAGTCTATCAACGATGCATCAACAGAGCTCTGAGCTCGTTAATAGGGAATGCAGCTCAAGTCTACGTCGATGACGTATTAAGCAGATGTGAAAATATCGCAGAAGGGCTGTCAAACATAGAACGTATTCTAATAGCACTACAAGATGCGGGTTTTTCCATTAATGCTGATAAATGCAGTTTTTTTAAGCGCTCCATCGAATATTTGGGTAACGTAGTATCTAATGGACAAGTCTGGCCAAGCCCACGGAAAATAGATGCTCTGGTAAAATCGCCGGTACCAACAACACCCAGACAAGAGGAAGCACCTATTCAATTGTACACAGATGCAAGTAGTTTGGGATTCGGAGCAGTACTGGTACAAGTAATTGCGGGACGACAACATGCAGTTGCCTTTATGAGCACGAGAACTACTGAAACAGAAAGTCGCTATCACTCTTATGAATTAGAGACCTTGGCAGTAGTCCGAGCGATAAAACACTTTCGGCAGTATCTTTATGGACGTAAGTTTACAGTTATCACAGACTGTAATGCACTAAAAGCATCCAAACACAAAAAGGACTTACTCCCTAGAATCCACCGTTGGTGGGCATTTTTACAAAACTATAATTTTGAGGTTGAATACCGCAAGGGTCAACAGCTTCAACACGCAGACTACTTCAGTGGGAACCCAGTCGAACTCACAGTGAATATAATGACCAGAGATCTAGACTGGCTGAAAATTGAACAGCGACGTGATGAAACACTACGAGCTATAATGGATGGTATGAATAATAACAATCCAAGTAACGGCTATATGCTAGAAAACAATGTCCTCAAGCATATCGTGCAAGATCCAACCTTCGGACACCGATACTGCACAGTGGTACCCAGGTCCTTTCAGTGGAGTTTAATAAACTCCTTCCACACCGCACTGAAGCACCCTGGCTGGGAAAAGACGTTGCAGAAAATTAAGGACAGCCACTGGTTTGACAACATGAGCACGAAGAAACCGTCTGCTGCTTTTCAAGTAATACACATGGATATAACAGGCAAGATGGGAACATCCAACGACCAACAGTATGTGATTATCACCATAGATGCTTTTACGAAATACGTGCTATTCTATTATGCAACTAACAAAAATCCACCCAGCACATTAGCTGCCTTAAAGCGTACGGTTCATCTATTCGGTACTCCTGTCCAAATAATAGTCGACGGTGGAAGAGAGTTCCTCGGTGAATTCAAGACCTACTGCGATAGGGTAGGTATTGACATTCATGCTATAGCACCAGGAGTCAGCCGAGCAAATGGACAAGTAGAACGCGTCGTAGCTACACTAAAAAATGCTCTTACTATGATCAAGAATTACGAAACAGAAGAGTGGCACACAACGATTGCAGAACTTCAGCTAGCAATAAATTGCACTCCGCATCGTGTGACAGGCGTAGCTCCACTTACATTACTCACTCAGCGAAAGCATTGTGTTCCTCCAGAGCTACTTAAATTAGTAAATATTGACGAGCAGACTATTGATATTGAAGCACTCACTAACCATGTTCAACACAAGATGTCACAAAATGCAGAACAGGACAGGCAACGTTTCAATTCAAAAAAAGCTAGGATCCATCATTTCCAGCGTGGTGATTATGTGCTCATAAAAAATAATCCTCGTAATCAAACTTCGTTGGATCTCAAATTCAGCGAGCCATATGAGATAACAAGAATCCTGGACAACGACCGCTATTTAGTAAAAAAGGTGGTTGGTTCAGGGCGTTCAAGAAAAGTAGCTCATCATCAACTCCGTCGGGCACCGCAACCTGGAGACCAGATAGCCGTATCGGCGGAAGAAGACGACCCTCCAGCATCAGCCGATGAACCTATATGA

Protein

MSHHHESNNCDVSNADVTLFKNNTEVNVPSSEVGSHAASAQQQPEATSQIEPHHGLNTTGNAGSSLEQEQEQPQSALLNAPMSSVPPQFIMQMMHVMQQMSERLSTPAETKIRINDIYLPSFDPDTSVGVREWCQHIDKAIETYRLNDFDIRMKVGSLLKGRAKMWVDDWMVTAASWAELSNNLITTFEPENRYSRDIARFREHMYDSSKDISEFLSRAWVLWRRITKDKLPNEDAVEAVIGCVNDEKLRIELLNTRATTVPELISVASSVRAMKRFHQGSNKLSTNKRPRFLNSTSSNSSCHICKRTNHTTNECYYKMVTESKPEQRNKTTTETTKEVTSYQNDKITICSFCKIPGHSFETCFKRERALTSNVNYVAGSKLAPIQVKFGSKSFQAIFDSGAECSLMRESVAAQIPGKRLQTADYLKGIGQFPVLSIATLVTVGVIDNINVELQFHIVADYEMTTDILVGMNLINNTNLTMTITSGGTRLARQPHVNQVQCINPIFDKLDCDLTNEEDIAKLRTLLNKYQHLFIRGYPTTRVKTGELEIRLKNPNKYVERRPYRLSPIERERVRAIVKELMEHGIVRESKSPYSSPIILVKKKNGDDRMCVDFRELNSNTLRDHYPLPLISDQIDQLAKGQFFTTFDMAAGFHQIPIAESSIEKTAFVTPDGLYEYTTMPFGLSNACSVYQRCINRALSSLIGNAAQVYVDDVLSRCENIAEGLSNIERILIALQDAGFSINADKCSFFKRSIEYLGNVVSNGQVWPSPRKIDALVKSPVPTTPRQEEAPIQLYTDASSLGFGAVLVQVIAGRQHAVAFMSTRTTETESRYHSYELETLAVVRAIKHFRQYLYGRKFTVITDCNALKASKHKKDLLPRIHRWWAFLQNYNFEVEYRKGQQLQHADYFSGNPVELTVNIMTRDLDWLKIEQRRDETLRAIMDGMNNNNPSNGYMLENNVLKHIVQDPTFGHRYCTVVPRSFQWSLINSFHTALKHPGWEKTLQKIKDSHWFDNMSTKKPSAAFQVIHMDITGKMGTSNDQQYVIITIDAFTKYVLFYYATNKNPPSTLAALKRTVHLFGTPVQIIVDGGREFLGEFKTYCDRVGIDIHAIAPGVSRANGQVERVVATLKNALTMIKNYETEEWHTTIAELQLAINCTPHRVTGVAPLTLLTQRKHCVPPELLKLVNIDEQTIDIEALTNHVQHKMSQNAEQDRQRFNSKKARIHHFQRGDYVLIKNNPRNQTSLDLKFSEPYEITRILDNDRYLVKKVVGSGRSRKVAHHQLRRAPQPGDQIAVSAEEDDPPASADEPI

Uniprot

A0A0A9WJJ8 A0A0A9Z954 A0A0A9WTW7 A0A0A9WUU5 A0A146KXF1 A0A0C9RXL6 + More
A0A0J7KEC9 A0A139WIB9 A0A2S2P032 X1X5H2 X1WPP0 T1PMR9 A0A0A1XB16 X1XTX3 J9L8N4 J9KLX4 A0A2Z6PD66

Pubmed

25401762 26823975 18362917 19820115 25830018

EMBL

GBHO01036023 GBHO01032007 JAG07581.1 JAG11597.1 GBHO01040010 GBHO01001812 + More
JAG03594.1 JAG41792.1 GBHO01032415 JAG11189.1 GBHO01032413 JAG11191.1 GDHC01018907 JAP99721.1 GBYB01013920 JAG83687.1 LBMM01008871 KMQ88569.1 KQ971339 KYB27733.1 GGMR01009949 MBY22568.1 ABLF02004401 ABLF02013544 ABLF02013550 ABLF02033943 ABLF02042737 KA649989 AFP64618.1 GBXI01005773 JAD08519.1 ABLF02008500 ABLF02029423 ABLF02017561 ABLF02041657 ABLF02042885 DF973928 GAU42639.1

Proteomes

UP000036403 UP000007266 UP000007819

Pfam

PF00098   zf-CCHC        + More
PF00078   RVT_1
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF17917   RT_RNaseH
PF00077   RVP
PF03732   Retrotrans_gag
PF02037   SAP

Interpro

IPR000477   RT_dom        + More
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR001584   Integrase_cat-core
IPR041577   RT_RNaseH_2
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf
IPR012337   RNaseH-like_sf
IPR041373   RT_RNaseH
IPR021109   Peptidase_aspartic_dom_sf
IPR001995   Peptidase_A2_cat
IPR001969   Aspartic_peptidase_AS
IPR018061   Retropepsins
IPR005162   Retrotrans_gag_dom
IPR003034   SAP_dom
IPR036361   SAP_dom_sf

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098
SSF50630   SSF50630
SSF68906   SSF68906

Gene 3D

3.30.420.10 2.40.70.10 1.10.720.30

ProteinModelPortal

A0A0A9WJJ8 A0A0A9Z954 A0A0A9WTW7 A0A0A9WUU5 A0A146KXF1 A0A0C9RXL6 + More
A0A0J7KEC9 A0A139WIB9 A0A2S2P032 X1X5H2 X1WPP0 T1PMR9 A0A0A1XB16 X1XTX3 J9L8N4 J9KLX4 A0A2Z6PD66

PDB

4OL8 E-value=7.14615e-52, Score=520

KEGG

101745201 K08635 neprilysin [EC:3.4.24.11] | (RefSeq) endothelin-converting enzyme 1

GO

GO:0015074 GO:0003676 GO:0008270 GO:0004190 GO:0005634 GO:0003964 GO:0006508 GO:0016701 GO:0006355 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Length:

1308

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0636699999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00207

outside

1 - 1308

Pi

236.865921

Theta

220.340328

Tajima's D

1.456821

CLR

132.609357

CSRT

0.778111094445278

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree