Silkworm Genome Informatics Database

Gene

KWMTBOMO14878

Pre Gene Modal

BGIBMGA012170

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_Arkadia-like_[Amyelois_transitella]

Location

Bomo_Chr24(+):16874656-16913163 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.185

CDS

ATGAGCATAGGAGCCGGGGCTGGTGGTTCTAGAAGACCGGAGAGAAGAACCTCGGGACCCTCGGAGCGAAGACGGACGGATTTACGCGTCAGCCCCGGTGCCGGTACATCATCAGAACCTCCTCATATGCTGCACGCTCATCATAGTCACATGGATACGAATCCCTTGGAAGGGTTGTCGGCCGCCGCCGAAGCAGCGGGGGCGGAGCCCGAGATCGGCGTGAAACCCCCTCGGTCCCCGTCGCGGAAGCGACGTCGGGTCTGCTCCCATATATCGTCCGGCGAGAGTAACGTCTCAGTGACCGCACCCCCCGTCGAGAGACGAACTCCGCGACACCACTATCAACCCCCCCGTAGAGTACGTTACCCAGGAGGGGGGGTGCCCCCCCACCCGGCGCACCTCGCCCATTCCGCGCCCCTACTGCTGGACATCAACCAGATGTCACTACGTGGGGCTAGGTTAAGCGCTTTAGGCGGGGGAGTATCGTGGCCTCATCGGGATCACGGGCAACACCCCGCCCATCCCGGGCACCCGGGTCATCCGGGACACCCTGGGCATCCCGGACATCCGGGCCACCCGGGTCATCCAGGTCACCCGGCCCACACCGTTCATCCGGCGCACGCTACAAGAGCCCAGGGCGGCGGGAACGCAGCCGCCGAGCTATGGGGAGTTCTACCTTCACTGCCACATCTGAGATACCAGATGGGTGGGGTGTACGCCGGTCTGCAGTACGCGACGCCCAGGGGACCGTTCGCTTCGCCCCCGCATCCTCACACGCACTACATCACTAACTCTCAGAGAGGGGATGGTGGACCAAGGTTAGACGTGGACGGTGGTCTGTCTCCACTCCAGCCGGATCTGCATCACGCACCGTTACTCCTGGCCACCGAGGCCCGGGGTACCCCATTGGAGCTAATGGCTCCGCACCACGCCAGACACGCCTTGTCACACCATCACAGGCGCGCGGGGGGCGGGGTGGGGGCGCGGCCCTACGTGCGCCACGCGGCGCGCTGGCCTCACGCGCACCTGCACCACCTGCACGCACAGGGTGGCAGCGGCCTGGTCGGAGCTCCCCACGTCCAGCAGCTGCACGTCGCTCAGCCCCTCCAGCTACCTCCGCCCCCTCCAACTTATCAGGTATTCCTGAATCTGCTGGCGATGTTCCCGCTGTCTCCTTACGGGGAGCCGCGCGAGGAGTCCGCAGACTCCCCCGAGACGGAGAACTACGAGGCCCTTTTGTCGCTGGCTGAGCGGCTCGGGGAGGCCAAGCCCCGGGGCCTGGCGCGGGCCGAGATCGAGCAGCTGCCCAGCTACAAGTACGGAAGCGGGGCGGAGGGCGAGCAGAGCTCGTGCGTGGTCTGCATGGCGGAGTTCGAGGCCAGGCAGACCCTGCGCGTGCTGCCCTGCGCCCACCACTTCCACGCTAAATGCGTCGATAAATGGCTGAGGTCGAACCGCACGTGTCCCATATGCAGGGGCAACGCGTCAGAGTACTTCAGCAGCGCGGAGTGA

Protein

MSIGAGAGGSRRPERRTSGPSERRRTDLRVSPGAGTSSEPPHMLHAHHSHMDTNPLEGLSAAAEAAGAEPEIGVKPPRSPSRKRRRVCSHISSGESNVSVTAPPVERRTPRHHYQPPRRVRYPGGGVPPHPAHLAHSAPLLLDINQMSLRGARLSALGGGVSWPHRDHGQHPAHPGHPGHPGHPGHPGHPGHPGHPGHPAHTVHPAHATRAQGGGNAAAELWGVLPSLPHLRYQMGGVYAGLQYATPRGPFASPPHPHTHYITNSQRGDGGPRLDVDGGLSPLQPDLHHAPLLLATEARGTPLELMAPHHARHALSHHHRRAGGGVGARPYVRHAARWPHAHLHHLHAQGGSGLVGAPHVQQLHVAQPLQLPPPPPTYQVFLNLLAMFPLSPYGEPREESADSPETENYEALLSLAERLGEAKPRGLARAEIEQLPSYKYGSGAEGEQSSCVVCMAEFEARQTLRVLPCAHHFHAKCVDKWLRSNRTCPICRGNASEYFSSAE

Uniprot

NA

ProteinModelPortal

NA

PDB

4V3L E-value=1.41459e-24, Score=281

KEGG

101738329 K15692 E3 ubiquitin-protein ligase RNF13 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RNF13

GO

GO:0005515 GO:0008270 GO:0007264 GO:0006508 GO:0016701 GO:0006355 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Length:

503

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00055

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00051

outside

1 - 503

Pi

25.669858

Theta

180.59739

Tajima's D

1.764991

CLR

0.204932

CSRT

0.844407779611019

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics