SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14873
Annotation
S33901_reverse_transcriptase_-_silkworm_transposon_Pao
Location in the cell
Nuclear   Reliability : 3.786
 

Sequence

CDS
ATGCCGATAACGCGGTCAACAGGAAGAGGACGGATCGAAACAAAACAGTCGCCGCCCTCAGAAACCACAGCTACAACACAGAGCATGTGGACAGAAACAACCGCGAATACCGTCATGAGTCTGGTAGCCCCCACAACAGAATCATCGTGCGCAACAGCCAACATGGAAGCCACGATGAAAGTCGCAGAGAAACCTGGGAACTCAAAAACAGAGGCCGTCAAACAGTATATAGCCAAACAGAATGACGTGCCAACAAAACAGCGCGCCGGTACAGTCAAAACTGACCGGTCGCGAAACAGAAAAGAACAGAAGATAGCCAAAGCTAGAGAAGAGCTCGCCCGCCTACAGGTGGAGTTAGCAGCCGCCCGATTGGCCACGCTCGAAGCTGGATCTGATGACGAAAACAGCGAATCAGAATACAGTAAGTCAGAACTCGACGAAAGAGTGGGCACGTGGTTGGAAACCCAACCCACAAAAACGGAAAATCACGACCGACATAAGGAAACACCGGCGGGAGCCTGCGACAAACAAGACTTCTCAGATCTAACCGCAGCAATAACACTCGCCGTCAAAGCCGCCCGCGAACCAAGATACACAGAATTGCCAATCTTTAATGGAAATCACCAAGACTGGCTATCCTTTCGTGCAGCTTATCAAGAGACAATGAATTCCTTTACAAAAACTGAAAATATAAACAGACTCAGAAGGAACCTGAAAGGAAGGGCAAAGGAAGCCGTTGATGGATTACTTATAACAAACGCTGATCCGTCCGACGTCATAAGAAGTCTAGAAGCGCGATTCGGAAGACCGGAAACAATAGCCATAACGGAGTTAGACACGCTACGAGCTCTGCCACGATTAACAGAAACACCAAGAGACATTTGTATATTCTCTAGTAAGGTGACCAACGCCGTAGCTACGCTTCGTGCATTAAATTGCACACATTACTTATATAATCCGGAAACTACCAAAACAATGTTAGAAAAACTCACACCAACACTACGTTACCGATACTACGACTTCACCGCGGTACAACCGAAGGAGGATCCGGATCTGATTAAATTTGAAAAATTCATGAAAAGAGAAGCCGAACTGTGCAACCCTTATGCACAGACCGAACAGGCGGGGCACTACTCGCAGCCCGCACAACACAACAGACGCACACAGAACGTGCACATAGTCAGTGAGAAGCCATCACGAGCTAAATGTCCGGTATGTAGCAACACTGAACACACCACAACAGACTGCTACATATTCAAGAAGGCAGACTCAAACACAAGATGGGACATCGCTAAGAATAAACACCTGTGTTTCCGATGTCTACAGTATAAGAATAAAACCCACAACTGTAAACCGAAGACGTGTGGCATCAATAATTGCAAATATACTCACAACAAGATGCTACACTTCGACAGAAAAATTGAAAAAACAGACAACAGTGACAACGAAACAACAGAGAACATTAATTCCGCTTGGACCGAAAAACAGAAACAGTCCTATTTGAAAATAATCCCAGTCCAAGTACAAGGACCGATAGGCACGGTTGATACATACGCGCTGCTTGACGATGGATCGACGGTGACACTCATAGACGAAATCATTTGCAAGAAGACTGGAATAACAGGATCAATCGATCCGTTACACATACAGGCGATTAACAACATAAAATCAACGGAAACAAGGTCAAGAAGAGTCAACCTCACGCTCAGAGGCCTCAACAGTCGAAAAGAAATAATACAAGCGAGAACAGTTAACGACCTACAAGTAACAGCACAAAAAATACCAAAGGAACAGATAGATGAGTATTCGCACCTACGAGACATCAGTGACATCATCACGTACGAGAACGCGAAACCTGGAATCCTGATTGGCCAAGACAACTGGCACATGTTACTAGCTTCGAAAGTTAGACGAGGCAACAGGAATCAGCCAATAGCGTCACTGACACCTCTAGGCTGGTTATTGCATGGAGGTCGCACTCGTACCTTAGGCCACCACATAAACTACATAAATCATGCTAACGAAACCCAGGAAGATGATAAAATAGAAAATCTGGTAAAACAGTATTTCGCTATGGATGCGCTATGCATCACACCAAGAAAACCAAAAACAGACCCAGAGGAACAGGCGCTTCGCATCCTCAACAGCAATACAGTCCACACAACAGATGGAAGATACGAAACTGCTCTGCTCTGGAAAACAGATAATGTCAGTCTACCAGACAACTACAATAACTCGTTAAAACGACTGATAAATATAGAAAACAAACTTGATCGTAATCCGGAACTGAAACAGAAATACACAGAACAGATGGAAGCACTCGTCGCGAAAGGCTACGCCGAGCCCGCTCCAAAAACAAAAACAGACAACAGAACGTGGTATCTACCTCACTTCGCCGTCGTGAACCCCCTGAAGCCGGAAAAACTCCGAGTCGTCCACGACGCCGCCGCCAGAACAAGAGGGGTAGCTTTGAATGATATGCTGCTTAAGGGACCGGACCTACTCCAATCACTGCCAGGAGTGATAATGAGATTCAGACAGCATAATATAACAGTAACAGCAGACATCAAAGAGATGTTCATACAAGTGAAATTGAGACCTGAAGACAGAGACGCGCTCCGTTATCTCTGGTGCAAAGATCAGCGAGATGACAAGCCCCCAGAAGAAAACAGAATGACCTCGTTGATCTTCGGTGCGTCAAGTTCTCCTTCCACAGCAATATATGTAAAGAACTTGACCGCCCAGAAACAAGAAGCCACGCACCCGGAGGCGGCAGTCGCAGTACGGAACAGACACTACGTAAACGATTCTACAGACTTTCGTCGAAAACACGAAAGAAAGTCGACCTCGAAGACCTTCTGGACCGACAGTGAGATAGTGTTAAGATGGACAAGAACGGGATCACGCTCGTACAAACCATACGTCACCCAACGCCTGACAGCTATAGAAGGCAGTTCAACAGTAAACGGGAGGCGATGGTTACCCACGAAGCATAACTTAGCCGACGACGTGACCCGAGACGTCCCAATGTCGTATCAGAATGAACATAGATGGTTCAGAGGGCCAGATTTCTTACGCCAACGAGAGGACTCCTGGCCGACGGAATCGGCGTCAGAAACTACAGAACCGATGGGTGAAGTAAACATAGCAGCTGCAGCACCGGCGGGAGCCTCATGGCCGAGGCGTCGCCATGAAAAGTGGAAGTGCCTGCCACAAAACACGCGCACACGAATTAAAAGTGATCGCGACGTATCCAGGACCCGACAACGTGGTGCGCACTGTAGATATCAGAACCAAAGGGGGAGTTCTACGGAGACCAGTACGAAAACTAGTGATCCTCCCCATAGAAGACGACCATCCTGCACCGAGAAATAA
Protein
MPITRSTGRGRIETKQSPPSETTATTQSMWTETTANTVMSLVAPTTESSCATANMEATMKVAEKPGNSKTEAVKQYIAKQNDVPTKQRAGTVKTDRSRNRKEQKIAKAREELARLQVELAAARLATLEAGSDDENSESEYSKSELDERVGTWLETQPTKTENHDRHKETPAGACDKQDFSDLTAAITLAVKAAREPRYTELPIFNGNHQDWLSFRAAYQETMNSFTKTENINRLRRNLKGRAKEAVDGLLITNADPSDVIRSLEARFGRPETIAITELDTLRALPRLTETPRDICIFSSKVTNAVATLRALNCTHYLYNPETTKTMLEKLTPTLRYRYYDFTAVQPKEDPDLIKFEKFMKREAELCNPYAQTEQAGHYSQPAQHNRRTQNVHIVSEKPSRAKCPVCSNTEHTTTDCYIFKKADSNTRWDIAKNKHLCFRCLQYKNKTHNCKPKTCGINNCKYTHNKMLHFDRKIEKTDNSDNETTENINSAWTEKQKQSYLKIIPVQVQGPIGTVDTYALLDDGSTVTLIDEIICKKTGITGSIDPLHIQAINNIKSTETRSRRVNLTLRGLNSRKEIIQARTVNDLQVTAQKIPKEQIDEYSHLRDISDIITYENAKPGILIGQDNWHMLLASKVRRGNRNQPIASLTPLGWLLHGGRTRTLGHHINYINHANETQEDDKIENLVKQYFAMDALCITPRKPKTDPEEQALRILNSNTVHTTDGRYETALLWKTDNVSLPDNYNNSLKRLINIENKLDRNPELKQKYTEQMEALVAKGYAEPAPKTKTDNRTWYLPHFAVVNPLKPEKLRVVHDAAARTRGVALNDMLLKGPDLLQSLPGVIMRFRQHNITVTADIKEMFIQVKLRPEDRDALRYLWCKDQRDDKPPEENRMTSLIFGASSSPSTAIYVKNLTAQKQEATHPEAAVAVRNRHYVNDSTDFRRKHERKSTSKTFWTDSEIVLRWTRTGSRSYKPYVTQRLTAIEGSSTVNGRRWLPTKHNLADDVTRDVPMSYQNEHRWFRGPDFLRQREDSWPTESASETTEPMGEVNIAAAAPAGASWPRRRHEKWKCLPQNTRTRIKSDRDVSRTRQRGAHCRYQNQRGSSTETSTKTSDPPHRRRPSCTEK

Summary

Pfam
PF03564   DUF1759        + More
PF05380   Peptidase_A17
PF00665   rve
PF18701   DUF5641
PF01565   FAD_binding_4
PF17921   Integrase_H2C2
PF09129   Chol_subst-bind
PF00628   PHD
PF00078   RVT_1
PF05585   DUF1758
Interpro
IPR005312   DUF1759        + More
IPR040676   DUF5641       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR006094   Oxid_FAD_bind_N       
IPR016166   FAD-bd_PCMH       
IPR016164   FAD-linked_Oxase-like_C       
IPR041588   Integrase_H2C2       
IPR016170   Cytok_DH_C_sf       
IPR015213   Cholesterol_OX_subst-bd       
IPR036318   FAD-bd_PCMH-like_sf       
IPR016169   FAD-bd_PCMH_sub2       
IPR016167   FAD-bd_PCMH_sub1       
IPR011011   Znf_FYVE_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR019786   Zinc_finger_PHD-type_CS       
IPR001841   Znf_RING       
IPR000477   RT_dom       
IPR008737   Peptidase_asp_put       
SUPFAM
SSF53098   SSF53098        + More
SSF56176   SSF56176       
SSF55103   SSF55103       
SSF57903   SSF57903       

Ontologies

Topology

Length:
1124
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00141
Exp number, first 60 AAs:
0.00061
Total prob of N-in:
0.00004
outside
1  -  1124
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.322368
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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