Gene

KWMTBOMO14873

Annotation

S33901_reverse_transcriptase_-_silkworm_transposon_Pao

Location

Bomo_Chr24(+):16778416-16782141      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.786

CDS

ATGCCGATAACGCGGTCAACAGGAAGAGGACGGATCGAAACAAAACAGTCGCCGCCCTCAGAAACCACAGCTACAACACAGAGCATGTGGACAGAAACAACCGCGAATACCGTCATGAGTCTGGTAGCCCCCACAACAGAATCATCGTGCGCAACAGCCAACATGGAAGCCACGATGAAAGTCGCAGAGAAACCTGGGAACTCAAAAACAGAGGCCGTCAAACAGTATATAGCCAAACAGAATGACGTGCCAACAAAACAGCGCGCCGGTACAGTCAAAACTGACCGGTCGCGAAACAGAAAAGAACAGAAGATAGCCAAAGCTAGAGAAGAGCTCGCCCGCCTACAGGTGGAGTTAGCAGCCGCCCGATTGGCCACGCTCGAAGCTGGATCTGATGACGAAAACAGCGAATCAGAATACAGTAAGTCAGAACTCGACGAAAGAGTGGGCACGTGGTTGGAAACCCAACCCACAAAAACGGAAAATCACGACCGACATAAGGAAACACCGGCGGGAGCCTGCGACAAACAAGACTTCTCAGATCTAACCGCAGCAATAACACTCGCCGTCAAAGCCGCCCGCGAACCAAGATACACAGAATTGCCAATCTTTAATGGAAATCACCAAGACTGGCTATCCTTTCGTGCAGCTTATCAAGAGACAATGAATTCCTTTACAAAAACTGAAAATATAAACAGACTCAGAAGGAACCTGAAAGGAAGGGCAAAGGAAGCCGTTGATGGATTACTTATAACAAACGCTGATCCGTCCGACGTCATAAGAAGTCTAGAAGCGCGATTCGGAAGACCGGAAACAATAGCCATAACGGAGTTAGACACGCTACGAGCTCTGCCACGATTAACAGAAACACCAAGAGACATTTGTATATTCTCTAGTAAGGTGACCAACGCCGTAGCTACGCTTCGTGCATTAAATTGCACACATTACTTATATAATCCGGAAACTACCAAAACAATGTTAGAAAAACTCACACCAACACTACGTTACCGATACTACGACTTCACCGCGGTACAACCGAAGGAGGATCCGGATCTGATTAAATTTGAAAAATTCATGAAAAGAGAAGCCGAACTGTGCAACCCTTATGCACAGACCGAACAGGCGGGGCACTACTCGCAGCCCGCACAACACAACAGACGCACACAGAACGTGCACATAGTCAGTGAGAAGCCATCACGAGCTAAATGTCCGGTATGTAGCAACACTGAACACACCACAACAGACTGCTACATATTCAAGAAGGCAGACTCAAACACAAGATGGGACATCGCTAAGAATAAACACCTGTGTTTCCGATGTCTACAGTATAAGAATAAAACCCACAACTGTAAACCGAAGACGTGTGGCATCAATAATTGCAAATATACTCACAACAAGATGCTACACTTCGACAGAAAAATTGAAAAAACAGACAACAGTGACAACGAAACAACAGAGAACATTAATTCCGCTTGGACCGAAAAACAGAAACAGTCCTATTTGAAAATAATCCCAGTCCAAGTACAAGGACCGATAGGCACGGTTGATACATACGCGCTGCTTGACGATGGATCGACGGTGACACTCATAGACGAAATCATTTGCAAGAAGACTGGAATAACAGGATCAATCGATCCGTTACACATACAGGCGATTAACAACATAAAATCAACGGAAACAAGGTCAAGAAGAGTCAACCTCACGCTCAGAGGCCTCAACAGTCGAAAAGAAATAATACAAGCGAGAACAGTTAACGACCTACAAGTAACAGCACAAAAAATACCAAAGGAACAGATAGATGAGTATTCGCACCTACGAGACATCAGTGACATCATCACGTACGAGAACGCGAAACCTGGAATCCTGATTGGCCAAGACAACTGGCACATGTTACTAGCTTCGAAAGTTAGACGAGGCAACAGGAATCAGCCAATAGCGTCACTGACACCTCTAGGCTGGTTATTGCATGGAGGTCGCACTCGTACCTTAGGCCACCACATAAACTACATAAATCATGCTAACGAAACCCAGGAAGATGATAAAATAGAAAATCTGGTAAAACAGTATTTCGCTATGGATGCGCTATGCATCACACCAAGAAAACCAAAAACAGACCCAGAGGAACAGGCGCTTCGCATCCTCAACAGCAATACAGTCCACACAACAGATGGAAGATACGAAACTGCTCTGCTCTGGAAAACAGATAATGTCAGTCTACCAGACAACTACAATAACTCGTTAAAACGACTGATAAATATAGAAAACAAACTTGATCGTAATCCGGAACTGAAACAGAAATACACAGAACAGATGGAAGCACTCGTCGCGAAAGGCTACGCCGAGCCCGCTCCAAAAACAAAAACAGACAACAGAACGTGGTATCTACCTCACTTCGCCGTCGTGAACCCCCTGAAGCCGGAAAAACTCCGAGTCGTCCACGACGCCGCCGCCAGAACAAGAGGGGTAGCTTTGAATGATATGCTGCTTAAGGGACCGGACCTACTCCAATCACTGCCAGGAGTGATAATGAGATTCAGACAGCATAATATAACAGTAACAGCAGACATCAAAGAGATGTTCATACAAGTGAAATTGAGACCTGAAGACAGAGACGCGCTCCGTTATCTCTGGTGCAAAGATCAGCGAGATGACAAGCCCCCAGAAGAAAACAGAATGACCTCGTTGATCTTCGGTGCGTCAAGTTCTCCTTCCACAGCAATATATGTAAAGAACTTGACCGCCCAGAAACAAGAAGCCACGCACCCGGAGGCGGCAGTCGCAGTACGGAACAGACACTACGTAAACGATTCTACAGACTTTCGTCGAAAACACGAAAGAAAGTCGACCTCGAAGACCTTCTGGACCGACAGTGAGATAGTGTTAAGATGGACAAGAACGGGATCACGCTCGTACAAACCATACGTCACCCAACGCCTGACAGCTATAGAAGGCAGTTCAACAGTAAACGGGAGGCGATGGTTACCCACGAAGCATAACTTAGCCGACGACGTGACCCGAGACGTCCCAATGTCGTATCAGAATGAACATAGATGGTTCAGAGGGCCAGATTTCTTACGCCAACGAGAGGACTCCTGGCCGACGGAATCGGCGTCAGAAACTACAGAACCGATGGGTGAAGTAAACATAGCAGCTGCAGCACCGGCGGGAGCCTCATGGCCGAGGCGTCGCCATGAAAAGTGGAAGTGCCTGCCACAAAACACGCGCACACGAATTAAAAGTGATCGCGACGTATCCAGGACCCGACAACGTGGTGCGCACTGTAGATATCAGAACCAAAGGGGGAGTTCTACGGAGACCAGTACGAAAACTAGTGATCCTCCCCATAGAAGACGACCATCCTGCACCGAGAAATAA

Protein

MPITRSTGRGRIETKQSPPSETTATTQSMWTETTANTVMSLVAPTTESSCATANMEATMKVAEKPGNSKTEAVKQYIAKQNDVPTKQRAGTVKTDRSRNRKEQKIAKAREELARLQVELAAARLATLEAGSDDENSESEYSKSELDERVGTWLETQPTKTENHDRHKETPAGACDKQDFSDLTAAITLAVKAAREPRYTELPIFNGNHQDWLSFRAAYQETMNSFTKTENINRLRRNLKGRAKEAVDGLLITNADPSDVIRSLEARFGRPETIAITELDTLRALPRLTETPRDICIFSSKVTNAVATLRALNCTHYLYNPETTKTMLEKLTPTLRYRYYDFTAVQPKEDPDLIKFEKFMKREAELCNPYAQTEQAGHYSQPAQHNRRTQNVHIVSEKPSRAKCPVCSNTEHTTTDCYIFKKADSNTRWDIAKNKHLCFRCLQYKNKTHNCKPKTCGINNCKYTHNKMLHFDRKIEKTDNSDNETTENINSAWTEKQKQSYLKIIPVQVQGPIGTVDTYALLDDGSTVTLIDEIICKKTGITGSIDPLHIQAINNIKSTETRSRRVNLTLRGLNSRKEIIQARTVNDLQVTAQKIPKEQIDEYSHLRDISDIITYENAKPGILIGQDNWHMLLASKVRRGNRNQPIASLTPLGWLLHGGRTRTLGHHINYINHANETQEDDKIENLVKQYFAMDALCITPRKPKTDPEEQALRILNSNTVHTTDGRYETALLWKTDNVSLPDNYNNSLKRLINIENKLDRNPELKQKYTEQMEALVAKGYAEPAPKTKTDNRTWYLPHFAVVNPLKPEKLRVVHDAAARTRGVALNDMLLKGPDLLQSLPGVIMRFRQHNITVTADIKEMFIQVKLRPEDRDALRYLWCKDQRDDKPPEENRMTSLIFGASSSPSTAIYVKNLTAQKQEATHPEAAVAVRNRHYVNDSTDFRRKHERKSTSKTFWTDSEIVLRWTRTGSRSYKPYVTQRLTAIEGSSTVNGRRWLPTKHNLADDVTRDVPMSYQNEHRWFRGPDFLRQREDSWPTESASETTEPMGEVNIAAAAPAGASWPRRRHEKWKCLPQNTRTRIKSDRDVSRTRQRGAHCRYQNQRGSSTETSTKTSDPPHRRRPSCTEK

Uniprot

V9GZQ1   Q2MGA5   A0A3S2N5J7   A0A2A4IX21   A0A226DIM6   A0A226DH22   + More
A0A2H1WIC2   A0A1Y1LL75   A0A226EKF8   A0A182G158   A0A182H5B8   A0A1W7R6M1   A0A182HEF9   W8AJC8   A0A2M4CKZ8   A0A2M4B8T5   A0A2M4B8I4   A0A182HDB0   A0A2M4B963   A0A0N8ES95   A0A2M4BAL5   A0A2M4B8T6   A0A2M4B9E1   A0A2M4B9D0   A0A2M4B9W9   A0A1W7R6D5   Q4QQD2   A0A085N9I5   A0A085N2A4   A0A085MT01   A0A085NQS3   A0A0V1C2G4   A0A085M3L1  

Pubmed

8389039    28004739    26483478    24495485    26999592    15939396    + More
24929829   

EMBL

L09635    AAA75005.1    AF530470    AAQ09229.1    RSAL01000375    RVE42106.1    + More
NWSH01005440    PCG64209.1    LNIX01000019    OXA44537.1    OXA44855.1    ODYU01008796    SOQ52706.1    GEZM01052588    GEZM01052587    GEZM01052586    JAV74402.1    LNIX01000003    OXA57597.1    JXUM01136032    KQ568367    KXJ69026.1    JXUM01111221    KQ565482    KXJ70922.1    GEHC01000872    JAV46773.1    JXUM01005879    KQ560203    KXJ83865.1    GAMC01017930    JAB88625.1    GGFL01001727    MBW65905.1    GGFJ01000302    MBW49443.1    GGFJ01000218    MBW49359.1    JXUM01034199    KQ561015    KXJ80028.1    GGFJ01000432    MBW49573.1    GDUN01000090    JAN95829.1    GGFJ01000935    MBW50076.1    GGFJ01000306    MBW49447.1    GGFJ01000470    MBW49611.1    GGFJ01000471    MBW49612.1    GGFJ01000487    MBW49628.1    GEHC01000921    JAV46724.1    BN000804    CAJ00252.1    KL367527    KFD66131.1    KL367570    KFD63600.1    KL367674    KFD60347.1    KL367480    KFD71819.1    JYDH01000001    KRY43517.1    KL363235    KFD51807.1   

Proteomes

UP000283053    UP000218220    UP000198287    UP000069940    UP000249989    UP000054776    + More

PRIDE

V9GZQ1   

Pfam

PF03564   DUF1759        + More
PF05380   Peptidase_A17
PF00665   rve
PF18701   DUF5641
PF01565   FAD_binding_4
PF17921   Integrase_H2C2
PF09129   Chol_subst-bind
PF00628   PHD
PF00078   RVT_1
PF05585   DUF1758

Interpro

IPR005312   DUF1759        + More
IPR040676   DUF5641       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR006094   Oxid_FAD_bind_N       
IPR016166   FAD-bd_PCMH       
IPR016164   FAD-linked_Oxase-like_C       
IPR041588   Integrase_H2C2       
IPR016170   Cytok_DH_C_sf       
IPR015213   Cholesterol_OX_subst-bd       
IPR036318   FAD-bd_PCMH-like_sf       
IPR016169   FAD-bd_PCMH_sub2       
IPR016167   FAD-bd_PCMH_sub1       
IPR011011   Znf_FYVE_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR019786   Zinc_finger_PHD-type_CS       
IPR001841   Znf_RING       
IPR000477   RT_dom       
IPR008737   Peptidase_asp_put       

SUPFAM

SSF53098   SSF53098        + More
SSF56176   SSF56176       
SSF55103   SSF55103       
SSF57903   SSF57903       

Gene 3D

3.30.420.10     3.30.43.10     3.30.465.10     3.40.462.10     3.30.40.10    

ProteinModelPortal

V9GZQ1   Q2MGA5   A0A3S2N5J7   A0A2A4IX21   A0A226DIM6   A0A226DH22   + More
A0A2H1WIC2   A0A1Y1LL75   A0A226EKF8   A0A182G158   A0A182H5B8   A0A1W7R6M1   A0A182HEF9   W8AJC8   A0A2M4CKZ8   A0A2M4B8T5   A0A2M4B8I4   A0A182HDB0   A0A2M4B963   A0A0N8ES95   A0A2M4BAL5   A0A2M4B8T6   A0A2M4B9E1   A0A2M4B9D0   A0A2M4B9W9   A0A1W7R6D5   Q4QQD2   A0A085N9I5   A0A085N2A4   A0A085MT01   A0A085NQS3   A0A0V1C2G4   A0A085M3L1  

KEGG

101742722    no KO assigned | (RefSeq) uncharacterized LOC101742722

GO

GO:0003964   GO:0015074   GO:0003676   GO:0008270   GO:0071949   GO:0016491   GO:0046872   GO:0016021  

Length:

1124

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00141

Exp number, first 60 AAs:

0.00061

Total prob of N-in:

0.00004

outside

1  -  1124

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.322368

CSRT

0

Interpretation

Uncertain